Csa1G629110 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G629110
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPentatricopeptide repeat-containing protein; contains IPR002885 (Pentatricopeptide repeat)
LocationChr1 : 24918675 .. 24919049 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTTTATAGAGATATGCTTATGATGCTTGCAAAGAACAAAAGGGTAGAGGAAACAAAACAAGTATGGGAGGATCTGAAAAAAGAGGGAGTGTTATTTGATCAGCATACTTTTGGAGACATTATTCGAGCATACTTGGATAATACAATGCTCTCTGAGGCCATGGATATATATCGTGAAATGAGAGAATCTCCTGATAGGCCTTTATCTTTGCCTTTTCGTGTCATTCTTAAGGGCCTTATTCCATATCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTACGATCCACCAGAAGACTTGTTTGAAGAAGATGAAGATAGAAACAAGAGTGAAGATGATTAA

mRNA sequence

ATGTTCTTTTATAGAGATATGCTTATGATGCTTGCAAAGAACAAAAGGGTAGAGGAAACAAAACAAGTATGGGAGGATCTGAAAAAAGAGGGAGTGTTATTTGATCAGCATACTTTTGGAGACATTATTCGAGCATACTTGGATAATACAATGCTCTCTGAGGCCATGGATATATATCGTGAAATGAGAGAATCTCCTGATAGGCCTTTATCTTTGCCTTTTCGTGTCATTCTTAAGGGCCTTATTCCATATCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTACGATCCACCAGAAGACTTGTTTGAAGAAGATGAAGATAGAAACAAGAGTGAAGATGATTAA

Coding sequence (CDS)

ATGTTCTTTTATAGAGATATGCTTATGATGCTTGCAAAGAACAAAAGGGTAGAGGAAACAAAACAAGTATGGGAGGATCTGAAAAAAGAGGGAGTGTTATTTGATCAGCATACTTTTGGAGACATTATTCGAGCATACTTGGATAATACAATGCTCTCTGAGGCCATGGATATATATCGTGAAATGAGAGAATCTCCTGATAGGCCTTTATCTTTGCCTTTTCGTGTCATTCTTAAGGGCCTTATTCCATATCCAGAATTGAGAGAACAAGTTAAAGATGACTTCTTGGAGCTCTTCCCTGATATGATCGTCTACGATCCACCAGAAGACTTGTTTGAAGAAGATGAAGATAGAAACAAGAGTGAAGATGATTAA

Protein sequence

MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNKSEDD*
Homology
[Close]
BLAST of Csa1G629110 vs. Swiss-Prot
Match: PPR89_ARATH (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-51
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLA+NK+V+ETK+VWEDLKKE VLFDQHTFGD++R +LDN +  EAM +Y 
Sbjct: 71  MFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNELPLEAMRLYG 130

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMRESPDRPLSLPFRVILKGL+PYPELRE+VKDDFLELFP MIVYDPPED+ E+ ++  +
Sbjct: 131 EMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPEDICEDSDEEAR 190

Query: 121 SEDD 125
           ++ D
Sbjct: 191 TDSD 194

[Close]
BLAST of Csa1G629110 vs. Swiss-Prot
Match: PP266_ARATH (Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.7e-28
Identity = 54/112 (48.21%), Postives = 81/112 (72.32%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           +F Y+D+++ LAK+KR++E   +WE +KKE +  D  T+ ++IR +L +   ++AM++Y 
Sbjct: 143 VFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYE 202

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLF 113
           +M +SPD P  LPFRV+LKGL+P+P LR +VK DF ELFP+   YDPPE++F
Sbjct: 203 DMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEEIF 254

[Close]
BLAST of Csa1G629110 vs. TrEMBL
Match: A0A0A0LZW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629110 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 2.8e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR
Sbjct: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK
Sbjct: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120

Query: 121 SEDD 125
           SEDD
Sbjct: 121 SEDD 124

[Close]
BLAST of Csa1G629110 vs. TrEMBL
Match: A5C9B4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g03210 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.1e-52
Identity = 98/124 (79.03%), Postives = 114/124 (91.94%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           M+FYRDMLMMLA+NK+V+ETK+VWEDLK+E VLFDQHTFGDI+RA+LD  + SEAMDIY 
Sbjct: 71  MYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGGLPSEAMDIYE 130

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMR SPD PLSLP+RVILKGL+PYPELRE+VKDDFLELFP MIVYDPPEDLFE+++ R +
Sbjct: 131 EMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVYDPPEDLFEDEDGRTE 190

Query: 121 SEDD 125
           SEDD
Sbjct: 191 SEDD 194

[Close]
BLAST of Csa1G629110 vs. TrEMBL
Match: A0A061GTZ5_THECC (Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_040904 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.3e-51
Identity = 96/124 (77.42%), Postives = 114/124 (91.94%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLA+N++V+E++QVWEDLK+E VLFDQHTFGD++RAYLD+ + SEAMDIY 
Sbjct: 125 MFFYRDMLMMLARNRKVDESRQVWEDLKREEVLFDQHTFGDLVRAYLDSGLPSEAMDIYE 184

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMR SPD PLSLPFRVILKGL+PYPELRE+VKDDFLELFPDMIVYDPPEDLF ++E + +
Sbjct: 185 EMRRSPDSPLSLPFRVILKGLLPYPELREKVKDDFLELFPDMIVYDPPEDLFGDEESKRE 244

Query: 121 SEDD 125
           SE +
Sbjct: 245 SESE 248

[Close]
BLAST of Csa1G629110 vs. TrEMBL
Match: A0A0D2SJZ7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G253400 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.0e-51
Identity = 98/122 (80.33%), Postives = 113/122 (92.62%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLA+N++V+E+++VWEDLKKE VLFDQHTFGD++R YLD+ + SEAMDIY 
Sbjct: 131 MFFYRDMLMMLARNRKVDESRRVWEDLKKEQVLFDQHTFGDLVRVYLDSGLPSEAMDIYD 190

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMR SPD PLSLPFRVILKGLIPYPELRE+VKDDFLELFPDMIVYDPPEDLFE+ E R++
Sbjct: 191 EMRRSPDPPLSLPFRVILKGLIPYPELREKVKDDFLELFPDMIVYDPPEDLFEDRESRSE 250

Query: 121 SE 123
           SE
Sbjct: 251 SE 252

[Close]
BLAST of Csa1G629110 vs. TrEMBL
Match: A0A0D2U6Z0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G253400 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 3.0e-51
Identity = 98/122 (80.33%), Postives = 113/122 (92.62%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLA+N++V+E+++VWEDLKKE VLFDQHTFGD++R YLD+ + SEAMDIY 
Sbjct: 125 MFFYRDMLMMLARNRKVDESRRVWEDLKKEQVLFDQHTFGDLVRVYLDSGLPSEAMDIYD 184

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMR SPD PLSLPFRVILKGLIPYPELRE+VKDDFLELFPDMIVYDPPEDLFE+ E R++
Sbjct: 185 EMRRSPDPPLSLPFRVILKGLIPYPELREKVKDDFLELFPDMIVYDPPEDLFEDRESRSE 244

Query: 121 SE 123
           SE
Sbjct: 245 SE 246

[Close]
BLAST of Csa1G629110 vs. TAIR10
Match: AT1G62350.1 (AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 203.0 bits (515), Expect = 1.1e-52
Identity = 93/124 (75.00%), Postives = 109/124 (87.90%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLA+NK+V+ETK+VWEDLKKE VLFDQHTFGD++R +LDN +  EAM +Y 
Sbjct: 71  MFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNELPLEAMRLYG 130

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMRESPDRPLSLPFRVILKGL+PYPELRE+VKDDFLELFP MIVYDPPED+ E+ ++  +
Sbjct: 131 EMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPEDICEDSDEEAR 190

Query: 121 SEDD 125
           ++ D
Sbjct: 191 TDSD 194

[Close]
BLAST of Csa1G629110 vs. TAIR10
Match: AT3G46870.1 (AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-29
Identity = 54/112 (48.21%), Postives = 81/112 (72.32%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           +F Y+D+++ LAK+KR++E   +WE +KKE +  D  T+ ++IR +L +   ++AM++Y 
Sbjct: 143 VFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFLRDGCPADAMNVYE 202

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLF 113
           +M +SPD P  LPFRV+LKGL+P+P LR +VK DF ELFP+   YDPPE++F
Sbjct: 203 DMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDPPEEIF 254

[Close]
BLAST of Csa1G629110 vs. NCBI nr
Match: gi|449442589|ref|XP_004139064.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 4.0e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR
Sbjct: 133 MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 192

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK
Sbjct: 193 EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 252

Query: 121 SEDD 125
           SEDD
Sbjct: 253 SEDD 256

[Close]
BLAST of Csa1G629110 vs. NCBI nr
Match: gi|700211458|gb|KGN66554.1| (hypothetical protein Csa_1G629110 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 4.0e-65
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR
Sbjct: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK
Sbjct: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120

Query: 121 SEDD 125
           SEDD
Sbjct: 121 SEDD 124

[Close]
BLAST of Csa1G629110 vs. NCBI nr
Match: gi|659098889|ref|XP_008450338.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDN MLSEAMDIYR
Sbjct: 133 MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNAMLSEAMDIYR 192

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK
Sbjct: 193 EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 252

Query: 121 SEDD 125
           SEDD
Sbjct: 253 SEDD 256

[Close]
BLAST of Csa1G629110 vs. NCBI nr
Match: gi|1009114387|ref|XP_015873659.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Ziziphus jujuba])

HSP 1 Score: 213.0 bits (541), Expect = 3.0e-52
Identity = 101/124 (81.45%), Postives = 114/124 (91.94%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           MFFYRDMLMMLA+NK+V+E+KQVWEDLK+EGVLFDQHTFGDIIRAYLD+ + SEAM+IY 
Sbjct: 162 MFFYRDMLMMLARNKKVDESKQVWEDLKREGVLFDQHTFGDIIRAYLDSGLPSEAMEIYD 221

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMR SPD P+SLPFRVILKGL+PYPELRE+VKD+FLELFP MIVYDPPEDLFE+ E R  
Sbjct: 222 EMRRSPDPPISLPFRVILKGLLPYPELREKVKDEFLELFPGMIVYDPPEDLFEDQEWRRD 281

Query: 121 SEDD 125
           SEDD
Sbjct: 282 SEDD 285

[Close]
BLAST of Csa1G629110 vs. NCBI nr
Match: gi|147841740|emb|CAN68786.1| (hypothetical protein VITISV_024068 [Vitis vinifera])

HSP 1 Score: 211.5 bits (537), Expect = 8.7e-52
Identity = 98/124 (79.03%), Postives = 114/124 (91.94%), Query Frame = 1 

Query: 1   MFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDIIRAYLDNTMLSEAMDIYR 60
           M+FYRDMLMMLA+NK+V+ETK+VWEDLK+E VLFDQHTFGDI+RA+LD  + SEAMDIY 
Sbjct: 71  MYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGGLPSEAMDIYE 130

Query: 61  EMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDMIVYDPPEDLFEEDEDRNK 120
           EMR SPD PLSLP+RVILKGL+PYPELRE+VKDDFLELFP MIVYDPPEDLFE+++ R +
Sbjct: 131 EMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVYDPPEDLFEDEDGRTE 190

Query: 121 SEDD 125
           SEDD
Sbjct: 191 SEDD 194

The following BLAST results are available for this feature:
BLAST of Csa1G629110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR89_ARATH1.9e-5175.00Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN... [more]
PP266_ARATH8.7e-2848.21Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN... [more]
BLAST of Csa1G629110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZW3_CUCSA2.8e-65100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629110 PE=4 SV=1[more]
A5C9B4_VITVI6.1e-5279.03Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0009g03210 PE=4 SV=... [more]
A0A061GTZ5_THECC2.3e-5177.42Pentatricopeptide repeat superfamily protein OS=Theobroma cacao GN=TCM_040904 PE... [more]
A0A0D2SJZ7_GOSRA3.0e-5180.33Uncharacterized protein OS=Gossypium raimondii GN=B456_013G253400 PE=4 SV=1[more]
A0A0D2U6Z0_GOSRA3.0e-5180.33Uncharacterized protein OS=Gossypium raimondii GN=B456_013G253400 PE=4 SV=1[more]
BLAST of Csa1G629110 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G62350.11.1e-5275.00 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G46870.14.9e-2948.21 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Csa1G629110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442589|ref|XP_004139064.1|4.0e-65100.00PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis sativu... [more]
gi|700211458|gb|KGN66554.1|4.0e-65100.00hypothetical protein Csa_1G629110 [Cucumis sativus][more]
gi|659098889|ref|XP_008450338.1|1.5e-6499.19PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo][more]
gi|1009114387|ref|XP_015873659.1|3.0e-5281.45PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Ziziphus jujub... [more]
gi|147841740|emb|CAN68786.1|8.7e-5279.03hypothetical protein VITISV_024068 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G629110.1Csa1G629110.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 4..32
score: 0.056coord: 38..65
score: 0.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 38..65
score: 7.6E-4coord: 7..35
score: 0.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 35..69
score: 9.767coord: 1..34
score: 8
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 1..124
score: 3.5
NoneNo IPR availablePANTHERPTHR24015:SF590SUBFAMILY NOT NAMEDcoord: 1..124
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G629110CSPI01G31100Wild cucumber (PI 183967)cpicuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G629110Wax gourdcuwgoB096
Csa1G629110Cucumber (Gy14) v1cgycuB500
Csa1G629110Cucurbita maxima (Rimu)cmacuB057
Csa1G629110Cucurbita maxima (Rimu)cmacuB085
Csa1G629110Cucurbita moschata (Rifu)cmocuB075
Csa1G629110Cucurbita moschata (Rifu)cmocuB047
Csa1G629110Melon (DHL92) v3.5.1cumeB041
Csa1G629110Watermelon (Charleston Gray)cuwcgB046
Csa1G629110Watermelon (97103) v1cuwmB022
Csa1G629110Cucurbita pepo (Zucchini)cpecuB349
Csa1G629110Cucurbita pepo (Zucchini)cpecuB652
Csa1G629110Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G629110Cucumber (Gy14) v2cgybcuB002
Csa1G629110Melon (DHL92) v3.6.1cumedB033
Csa1G629110Silver-seed gourdcarcuB0905
Csa1G629110Silver-seed gourdcarcuB0982
Csa1G629110Watermelon (97103) v2cuwmbB042