Csa1G616320 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCTTCCAGTGTTCTGTTTGGAGAAGTTTTTTCTTTTTGGGCAGTCTCAGTCAAGGAGGTTTTCTTTGGCAGGGCTATGGATAAGGTGGTGGATGTCTTCAATGCATTCTTTTGAATTTTTGGATTTTGGTTTCCTCATCATTTCATAGGGCTGGAGTTGTATGGTTGTTCTCTAGGGAGGCTTCTACCTTGGCAGATTGCTAGTCAATGCTGATAGAAGTTCATTTTCAAGCCTCATCTGGTTCCAAAGCTCCATGTCCCTCAATTTTCAAGTTTGTTCTTCGCCAGAAGTCTCGTTTTGGATTGTTTGTTCATTGGGTGTTTCTTTGGTCTGGTATCTTTTATTCTTTTGTTTTATTGTTGTTGTTCCGTGTTTCTGCTAATATTTTCATCTTTCCTTTGATCGTTTCTTTGTACTTTGAGTATTAGACTCATTTCATTATTTCAATGAAAAAGTCGTGTTTTTCGTTTTTTTTAAAGTGTGTTCTCTTTTAAAAAAAAAGGAAATAGAATTTTTAATTGATAAAATAAAAAGATAATAATGCTCAAAGTACAGGGAACTAAACTAAACTACCAAAAATACCAAACAAAACCTGAAGAAAATAAAAGGACGAAAGAGGAGAAATAAAATCAGTCCGGAGTTGAAACAAAGCGATCAATCCAAGTAAGAGAAATATTCAGTAAAAAATGCTGAACTCTCTCAAAAAACACTTTAACAGAAGAACTTAAAATGCCGACTAAGTGTGAGAACATGCACACATAGAAGAGATGCTGCAAGTCTATGTAATCAACCTAAAGAAGTGGGTAGGAAGCAGGGAATGAAGTACTCAAAAGATGCAACAACCTTTGACTATCTTCTACGTCTAGATTTTAATGTAGCTATAAAATAGCTAAAGTTAAAGCCTACTAAACAATCATTTTAACTGTCATAACTATGTCATTTACTAGGATCCTGAAAATGCTAGTTCCCAGAAAATAATCCTTTACAAATGACTAACACATTGTTGAAAATCTTGTGATAGATGGTTTTATCAGTTTATTCATTTTTTTGTTCAAGTTTGGTGACTTGTTCTCCCATTGCTTTCAGGTCAGAGAGTTTTATTCAAACATCCGGTGGTATGATGTTGAAAATACCCATCCTCTTCCCACGGTTGAAAAGGAATTAAGAAAATCAATCAGGCTTTTCAAGAAGGTAATTGTGCGCCGTAAGTCTGTTGAAGGGAACTTGGTAAAATATCTCCTTGACTTTGGAAAAAGAAGAGCTATTCCTGACATTGTTAAAAAACATGGGGTTAAGCTTGAGGATTCCAGTAACGAGAGAAAGAGATATTGGTTAAATGAGACTTTTGTTCCTTTGCATCTGGTGAAGAATTTTGAGGAGAAAAGAGTTGCTCGCAGAGCAAATGAGGTCAAACCCAAAATTGTGGAGTTGGGTATAGTGAAGTCCTCCCGGAAGAAGGGATTTGCATATTTGTTTTCAAGAGCAGATAAACTTGATTTATACCATTGTGGCCGCTGTAACAAAGTTGTGCCTGTCAGGTATTTTATACTTATTATTGCTTGTTTACTTGGATGTGTTTTATAGCGTGGTATTGCAATTTAATCACTTCTCTAGTTTCCTCATTCTGGAAACACAGGACTTTTCTGAAGTCTGTTATGGTTATTTCTAGAATATTTCTTTTATAATTTTTCATTGAATGAATAAAGTTGCAAAAGATCCAGCAAGAGGAAAACAGGCTCCAGACACTTCAGGCCAAAGAGCTACAAAACCGGTCCAATCAACACTATATGAAATAAATAATTTGAAAGAGAACATGAGAAGAATCAACAAAGTTTGTACAATTTCAAATGTTTTCCCACCATCTTTTAATATTCTGAATGATCTCTTACTTCTCCCCAAGCAATAAATCTATTGTTGAAGAGCTCGAATAAAATCATTCCAAATAACTTTTACCTCATATTAGCACCAAGCAATTGGGATAGAAGGCAAATTAGCATCTTTAGGGAGGCAGATGGAATTATACATCTCCTTTTTTCCTCTTTTGGTGTTAAAAAGGAAACAAGATTTTTCATGTCAAGGCATAAGTATTTGGAAATTGAACATCAAACTAAGAGGTCATGAGTTCAATCCATGGTAGCCACCTACCTAGAAATTAATTTTCTACGAGTTTCCTTGACACCCAAATGTTGTAGAGTCAAGCAGATTTTTTCGTGAGATTGGTCGAGGTGGGCGTAAGCTGGCCCGGACACTCACAGATATAAAATATATATATTTTTTCTTTGATTTAATGAAAAGACACTAACACTCAAAATGCAATGATATAAAGATAATACAATTAAACATCCGAAACAGATTTGTTATATAGTCCCTTCTGAGTCTTTTTGGCTTTTATTCAACTCAATGCTACTTGGTGGTTTACTAATTTCTTGCTAAATTCTTTTGTAATTATACCCTTCTAATGATTGATAACAATGAGTTTTGAAACGATCTATTTCATAATTTTGTGGCTATTTGGCAACTGCTCAAGAAAAAAACAGTTATAGCCTTCTAATGATTGATAACAATGGGAAGACTCTTCTTTACTAGGTTTGTTGGGGAGGGATAATCTTCACCCCTTAGCCTTAGGTTGTCCTTTTGTCTACTTTTTAATACAAGTATTTATTTTCTTAAACGATCATGGGTTGACCTAGTGGTAAAAAAGGAGATATATTCTCAATATCTAACTAAGAGGTCATGGGTTCAATCCATGGTGGCCACCTACCTAGAAATTAATTTCCTACGAGTTTCCTTCACATCCAAATATTGTAGGGTTAAGTGGGTTGTGCCGTGAGATTAGTTGAGGTGTGCGCAAGCTAGCCCAGACACTCATGGATATAAAAAGAAAGTATTAAAAGAAAGGATAAGAGCACTTGTGTTATATAGTCTTGTGAGACCTCAACTAATTAAAGAAAATTTTAAGGTATTCTAAATGAAAAGAGACGATCGATCTAGTTGTCAGAAAGCAATACTGAGTATATCTTTCACTATTTGATGATCAAAGTGGAATGGACTATGTATTTACTTTACCCGGCTTGAAATGGGCCCATCGTCTGTAGTAATACATTATTATTGGTTTCTTCTCATGAGCATCTCTTTTGTTTCATCTTATTCTTTTCTTTATAAGATTATGAGCTCCATTCATTATCACATTGTGATCTTGTTCAACTGCTAGATTGATTTCAAGGTTTGTGCACATAGTAGGCTTTTGAGAATGAATGTAGATGATGATGAATTGATTACTTATATGCTGTAAATATGGACAATACCTTTAATGTCATTCGTACTATTATTCAGAGACGTATGTTCTGACTCTTTGTTTACTTGGTTTTCATGTATCTATATTCTTTCACTTTACTGATTCTTTTTTCTTTGAACTGTATTGTAGGGAAGCTGTTAGTTGCAGATATTGTCAAGGTACATGGGGTTTTTTCTTTTCTTAACCATTTTGTTTTTCTGCATTGGGAACCACAAGTCATTGAGATGTTAATATCAGATTATATTACCAGGAGTTTTACCTTCTATTCTTCTCTACATTTAGCATTTCAAGTGAGGATTCGGTTCTCTGTAGGTAATCAATATAGTACTTAGAAATCTCAGATCTCCTGCGTAACTGAGGTTACCTGCTATTCCTAATTTGATAGGGAGATAATTATGGTTTTGTGTTCTACGTTTGACATCCCACATAGAACTTGCCACACAAAAAACCTTACCTTCATAGAAGTTCTAACCTTCCGCAAAGAAGTTTGGGGGAGGGAATGGGCAGAACATTCTTACTTGAATAATTGATGGGAAGGAACAAAGAACATTGTGGTTTGAGCTATTGGGATACAAATTATGATATACAGCACATACAAGTTATTTGTATATGCTGCATTGAGAAAGGTTGTTCATAAAATAATGGCTGGGAAATAGTGCTTGTTGTGGGTTGGTTTGTTATTTTTGTTTTCTTTCTTTCGCCTGACAAGTTCTAGTTCATCTCCCTCAGAAAAAGAATCCAGATAATTAGAAGAAAATGTACGTTTTCTTTGATGACTAGGGAGTCCATTGAAGTAAAGCATGATTATTGCTACGCTTGCTCATCTACAAGTTGAATGCCTAATTACTCACCAAAACTAAGAATACAGATCAAATTTGTTTGGAAAGTTAATCTTTTTGAATCTTTATTTTAAGTTTAATTCCTAATTATTCTTATTATGCTTTCAGGAATTTTTCACAAAAAGCATGTCAAGAAGTATGTGGAATCCGTTGCAGCAAAATGTACATATACCTGCCACAGTTGTTGGGATGGTATATCTGTGAAGTCTAATGGAAAAAGAGGGAAAAGTGGTGTAAAAGGAGGGAAGTTGCACATGGTGAAAGGTAAAAGACCTAGTGATCAACGTGCACTGCGATTGAAAAACAGAAAAAAAGCATTGAGGGCTGGAAAACAAGCACAGACACAAAACAATTCCAAAGTTCCGACAGGTATCCCTCTACGTCGTTCAGCAAGACAAGCTAAACACTCATCGCTTCAAAAGAAAAAGCAAGATAAAAAGGTTGGAGGAAGTGTCAAAAGGAAAAAGATGAAGTCCAGGAAGGGAACACCAAAAAAACGTAAAAGAGAGACTTCTTTGCAGAAGAAAAGGACTCTGGCGTGCCATAGCTTCTGGCTTAATGGTCTCTTCCTTTCTAGGAAGCCTGGTGACGAACGAGTGACACACTTCAGGGAGAAAAAGCTTCTTCTTCTAACTCCGAGGATTTCTGTGAACCATGATAAAGCAAAATGCAATCTTTGTTCTGAAACAGAACATGCATCTGGTTTGAATTATATTGCTTGTCAAAATTGTGGAGGTAATTGATTTTCTCCTTCCGCTCCTCTCTCATATTGGCTAATATTTTAACACGAATTTTCTTGCCTTTTACGGAAGTAGTGTGGAAGCATTGGACTAATATGTTTTACCTCTTTGTGTGTCATGCAGCGTGGTTTCATGGAGATGCTTTTGGACTTGATCAGACTAAAATAGATATATTGATTGGATTTAGGTGTCATATATGTCGGAAAAGGTTGCCTCCCGTCTGTCCCCATCAAATGAATCAGAAGCCTGATATTTTGGATGAGGTACAAAATAATACTGTGGTTTTTTGTTCTGTGGAACCCGTGCCCTGCCATTTATAGCTGTGGTACATGAGAGATTACTATGTTTCTTATGGGGAAAATAGAAAGATATACAAAGAAAGAAAAATGACCCAAGAAAAAAAAGTTACT ATGGCTGCTTCCAGTGTTCTGTTTGGAGAAGTTTTTTCTTTTTGGGCAGTCTCAGTCAAGGAGGTTTTCTTTGGCAGGGCTATGGATAAGGGAGGCTTCTACCTTGGCAGATTGCTAGTCAATGCTGATAGAAGTTCATTTTCAAGCCTCATCTGGTTCCAAAGCTCCATGTCCCTCAATTTTCAAGTCAGAGAGTTTTATTCAAACATCCGGTGGTATGATGTTGAAAATACCCATCCTCTTCCCACGGTTGAAAAGGAATTAAGAAAATCAATCAGGCTTTTCAAGAAGGTAATTGTGCGCCGTAAGTCTGTTGAAGGGAACTTGGTAAAATATCTCCTTGACTTTGGAAAAAGAAGAGCTATTCCTGACATTGTTAAAAAACATGGGGTTAAGCTTGAGGATTCCAGTAACGAGAGAAAGAGATATTGGTTAAATGAGACTTTTGTTCCTTTGCATCTGGTGAAGAATTTTGAGGAGAAAAGAGTTGCTCGCAGAGCAAATGAGGTCAAACCCAAAATTGTGGAGTTGGGTATAGTGAAGTCCTCCCGGAAGAAGGGATTTGCATATTTGTTTTCAAGAGCAGATAAACTTGATTTATACCATTGTGGCCGCTGTAACAAAGTTGTGCCTGTCAGGGAAGCTGTTAGTTGCAGATATTGTCAAGGAATTTTTCACAAAAAGCATGTCAAGAAGTATGTGGAATCCGTTGCAGCAAAATGTACATATACCTGCCACAGTTGTTGGGATGGTATATCTGTGAAGTCTAATGGAAAAAGAGGGAAAAGTGGTGTAAAAGGAGGGAAGTTGCACATGGTGAAAGGTAAAAGACCTAGTGATCAACGTGCACTGCGATTGAAAAACAGAAAAAAAGCATTGAGGGCTGGAAAACAAGCACAGACACAAAACAATTCCAAAGTTCCGACAGGTATCCCTCTACGTCGTTCAGCAAGACAAGCTAAACACTCATCGCTTCAAAAGAAAAAGCAAGATAAAAAGGTTGGAGGAAGTGTCAAAAGGAAAAAGATGAAGTCCAGGAAGGGAACACCAAAAAAACGTAAAAGAGAGACTTCTTTGCAGAAGAAAAGGACTCTGGCGTGCCATAGCTTCTGGCTTAATGGTCTCTTCCTTTCTAGGAAGCCTGGTGACGAACGAGTGACACACTTCAGGGAGAAAAAGCTTCTTCTTCTAACTCCGAGGATTTCTGTGAACCATGATAAAGCAAAATGCAATCTTTGTTCTGAAACAGAACATGCATCTGGTTTGAATTATATTGCTTGTCAAAATTGTGGAGCGTGGTTTCATGGAGATGCTTTTGGACTTGATCAGACTAAAATAGATATATTGATTGGATTTAGGTGTCATATATGTCGGAAAAGGTTGCCTCCCGTCTGTCCCCATCAAATGAATCAGAAGCCTGATATTTTGGATGAGGTACAAAATAATACTGTGGTTTTTTGTTCTGTGGAACCCGTGCCCTGCCATTTATAG ATGGCTGCTTCCAGTGTTCTGTTTGGAGAAGTTTTTTCTTTTTGGGCAGTCTCAGTCAAGGAGGTTTTCTTTGGCAGGGCTATGGATAAGGGAGGCTTCTACCTTGGCAGATTGCTAGTCAATGCTGATAGAAGTTCATTTTCAAGCCTCATCTGGTTCCAAAGCTCCATGTCCCTCAATTTTCAAGTCAGAGAGTTTTATTCAAACATCCGGTGGTATGATGTTGAAAATACCCATCCTCTTCCCACGGTTGAAAAGGAATTAAGAAAATCAATCAGGCTTTTCAAGAAGGTAATTGTGCGCCGTAAGTCTGTTGAAGGGAACTTGGTAAAATATCTCCTTGACTTTGGAAAAAGAAGAGCTATTCCTGACATTGTTAAAAAACATGGGGTTAAGCTTGAGGATTCCAGTAACGAGAGAAAGAGATATTGGTTAAATGAGACTTTTGTTCCTTTGCATCTGGTGAAGAATTTTGAGGAGAAAAGAGTTGCTCGCAGAGCAAATGAGGTCAAACCCAAAATTGTGGAGTTGGGTATAGTGAAGTCCTCCCGGAAGAAGGGATTTGCATATTTGTTTTCAAGAGCAGATAAACTTGATTTATACCATTGTGGCCGCTGTAACAAAGTTGTGCCTGTCAGGGAAGCTGTTAGTTGCAGATATTGTCAAGGAATTTTTCACAAAAAGCATGTCAAGAAGTATGTGGAATCCGTTGCAGCAAAATGTACATATACCTGCCACAGTTGTTGGGATGGTATATCTGTGAAGTCTAATGGAAAAAGAGGGAAAAGTGGTGTAAAAGGAGGGAAGTTGCACATGGTGAAAGGTAAAAGACCTAGTGATCAACGTGCACTGCGATTGAAAAACAGAAAAAAAGCATTGAGGGCTGGAAAACAAGCACAGACACAAAACAATTCCAAAGTTCCGACAGGTATCCCTCTACGTCGTTCAGCAAGACAAGCTAAACACTCATCGCTTCAAAAGAAAAAGCAAGATAAAAAGGTTGGAGGAAGTGTCAAAAGGAAAAAGATGAAGTCCAGGAAGGGAACACCAAAAAAACGTAAAAGAGAGACTTCTTTGCAGAAGAAAAGGACTCTGGCGTGCCATAGCTTCTGGCTTAATGGTCTCTTCCTTTCTAGGAAGCCTGGTGACGAACGAGTGACACACTTCAGGGAGAAAAAGCTTCTTCTTCTAACTCCGAGGATTTCTGTGAACCATGATAAAGCAAAATGCAATCTTTGTTCTGAAACAGAACATGCATCTGGTTTGAATTATATTGCTTGTCAAAATTGTGGAGCGTGGTTTCATGGAGATGCTTTTGGACTTGATCAGACTAAAATAGATATATTGATTGGATTTAGGTGTCATATATGTCGGAAAAGGTTGCCTCCCGTCTGTCCCCATCAAATGAATCAGAAGCCTGATATTTTGGATGAGGTACAAAATAATACTGTGGTTTTTTGTTCTGTGGAACCCGTGCCCTGCCATTTATAG MAASSVLFGEVFSFWAVSVKEVFFGRAMDKGGFYLGRLLVNADRSSFSSLIWFQSSMSLNFQVREFYSNIRWYDVENTHPLPTVEKELRKSIRLFKKVIVRRKSVEGNLVKYLLDFGKRRAIPDIVKKHGVKLEDSSNERKRYWLNETFVPLHLVKNFEEKRVARRANEVKPKIVELGIVKSSRKKGFAYLFSRADKLDLYHCGRCNKVVPVREAVSCRYCQGIFHKKHVKKYVESVAAKCTYTCHSCWDGISVKSNGKRGKSGVKGGKLHMVKGKRPSDQRALRLKNRKKALRAGKQAQTQNNSKVPTGIPLRRSARQAKHSSLQKKKQDKKVGGSVKRKKMKSRKGTPKKRKRETSLQKKRTLACHSFWLNGLFLSRKPGDERVTHFREKKLLLLTPRISVNHDKAKCNLCSETEHASGLNYIACQNCGAWFHGDAFGLDQTKIDILIGFRCHICRKRLPPVCPHQMNQKPDILDEVQNNTVVFCSVEPVPCHL*
BLAST of Csa1G616320 vs. Swiss-Prot
Match: PTM_ARATH (DDT domain-containing protein PTM OS=Arabidopsis thaliana GN=PTM PE=1 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 7.3e-25 Identity = 106/434 (24.42%), Postives = 188/434 (43.32%), Query Frame = 1
BLAST of Csa1G616320 vs. TrEMBL
Match: A0A0A0LZT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G616320 PE=4 SV=1) HSP 1 Score: 1016.9 bits (2628), Expect = 8.2e-294 Identity = 496/496 (100.00%), Postives = 496/496 (100.00%), Query Frame = 1
BLAST of Csa1G616320 vs. TrEMBL
Match: W9RR58_9ROSA (Nucleosome-remodeling factor subunit BPTF OS=Morus notabilis GN=L484_003167 PE=4 SV=1) HSP 1 Score: 484.2 bits (1245), Expect = 1.9e-133 Identity = 238/442 (53.85%), Postives = 315/442 (71.27%), Query Frame = 1
BLAST of Csa1G616320 vs. TrEMBL
Match: M5WPR0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000168mg PE=4 SV=1) HSP 1 Score: 479.2 bits (1232), Expect = 6.2e-132 Identity = 242/438 (55.25%), Postives = 310/438 (70.78%), Query Frame = 1
BLAST of Csa1G616320 vs. TrEMBL
Match: A0A067JH50_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25964 PE=4 SV=1) HSP 1 Score: 463.4 bits (1191), Expect = 3.5e-127 Identity = 231/419 (55.13%), Postives = 300/419 (71.60%), Query Frame = 1
BLAST of Csa1G616320 vs. TrEMBL
Match: A0A061GTQ7_THECC (DNA binding,zinc ion binding,DNA binding, putative isoform 3 OS=Theobroma cacao GN=TCM_040802 PE=4 SV=1) HSP 1 Score: 446.8 bits (1148), Expect = 3.4e-122 Identity = 240/516 (46.51%), Postives = 331/516 (64.15%), Query Frame = 1
BLAST of Csa1G616320 vs. TAIR10
Match: AT5G12400.1 (AT5G12400.1 DNA binding;zinc ion binding;DNA binding) HSP 1 Score: 355.1 bits (910), Expect = 6.8e-98 Identity = 194/431 (45.01%), Postives = 265/431 (61.48%), Query Frame = 1
BLAST of Csa1G616320 vs. TAIR10
Match: AT5G35210.1 (AT5G35210.1 metalloendopeptidases;zinc ion binding;DNA binding) HSP 1 Score: 116.7 bits (291), Expect = 4.1e-26 Identity = 106/434 (24.42%), Postives = 188/434 (43.32%), Query Frame = 1
BLAST of Csa1G616320 vs. TAIR10
Match: AT5G22760.1 (AT5G22760.1 PHD finger family protein) HSP 1 Score: 90.5 bits (223), Expect = 3.1e-18 Identity = 60/198 (30.30%), Postives = 95/198 (47.98%), Query Frame = 1
HSP 2 Score: 57.4 bits (137), Expect = 2.9e-08 Identity = 46/197 (23.35%), Postives = 84/197 (42.64%), Query Frame = 1
BLAST of Csa1G616320 vs. NCBI nr
Match: gi|700211418|gb|KGN66514.1| (hypothetical protein Csa_1G616320 [Cucumis sativus]) HSP 1 Score: 1016.9 bits (2628), Expect = 1.2e-293 Identity = 496/496 (100.00%), Postives = 496/496 (100.00%), Query Frame = 1
BLAST of Csa1G616320 vs. NCBI nr
Match: gi|659098989|ref|XP_008450379.1| (PREDICTED: uncharacterized protein LOC103492005 isoform X1 [Cucumis melo]) HSP 1 Score: 871.3 bits (2250), Expect = 8.0e-250 Identity = 421/438 (96.12%), Postives = 430/438 (98.17%), Query Frame = 1
BLAST of Csa1G616320 vs. NCBI nr
Match: gi|778663758|ref|XP_011660153.1| (PREDICTED: uncharacterized protein LOC101215194 [Cucumis sativus]) HSP 1 Score: 868.2 bits (2242), Expect = 6.8e-249 Identity = 422/423 (99.76%), Postives = 422/423 (99.76%), Query Frame = 1
BLAST of Csa1G616320 vs. NCBI nr
Match: gi|659098999|ref|XP_008450382.1| (PREDICTED: uncharacterized protein LOC103492005 isoform X3 [Cucumis melo]) HSP 1 Score: 845.1 bits (2182), Expect = 6.2e-242 Identity = 410/423 (96.93%), Postives = 417/423 (98.58%), Query Frame = 1
BLAST of Csa1G616320 vs. NCBI nr
Match: gi|659098996|ref|XP_008450381.1| (PREDICTED: uncharacterized protein LOC103492005 isoform X2 [Cucumis melo]) HSP 1 Score: 840.5 bits (2170), Expect = 1.5e-240 Identity = 408/422 (96.68%), Postives = 415/422 (98.34%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |