Csa1G615200 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G615200
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 24292212 .. 24292517 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTGAGGCCCTCGATGAAGATGCTGTTGGGACAGAGGGGTGGTGTTTGGCCTGCGAGCAATGGGGAAGATGTAGCGCAAAGGTGAGTGGTTTTGAAGGCTGCTATTATTTAACTTAACATAGATGGCTCGTGTAGCATACAGAGAAGCCATACAGGTCTGGGAGGTATTTTTCAAGTTTGGGAGGGTTGTTGTGGCTTTCTCAGCTTTTCTGGAGGGGGAATCAATGTGTTGTCCACAAAAACATTGGCGCTCCTCTCCAGTTTAAAGATGCCTGATGCAAAGGGGTTAGCGAGCTTTTGA

mRNA sequence

ATGCAGGTGAGGCCCTCGATGAAGATGCTGTTGGGACAGAGGGGTGGTGTTTGGCCTGCGAGCAATGGGGAAGATGTAGCGCAAAGCTTTTCTGGAGGGGGAATCAATGTGTTGTCCACAAAAACATTGGCGCTCCTCTCCAGTTTAAAGATGCCTGATGCAAAGGGGTTAGCGAGCTTTTGA

Coding sequence (CDS)

ATGCAGGTGAGGCCCTCGATGAAGATGCTGTTGGGACAGAGGGGTGGTGTTTGGCCTGCGAGCAATGGGGAAGATGTAGCGCAAAGCTTTTCTGGAGGGGGAATCAATGTGTTGTCCACAAAAACATTGGCGCTCCTCTCCAGTTTAAAGATGCCTGATGCAAAGGGGTTAGCGAGCTTTTGA

Protein sequence

MQVRPSMKMLLGQRGGVWPASNGEDVAQSFSGGGINVLSTKTLALLSSLKMPDAKGLASF*
Homology
[Close]
BLAST of Csa1G615200 vs. TrEMBL
Match: A0A0A0M2U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G615200 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.0e-25
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MQVRPSMKMLLGQRGGVWPASNGEDVAQSFSGGGINVLSTKTLALLSSLKMPDAKGLASF 60
          MQVRPSMKMLLGQRGGVWPASNGEDVAQSFSGGGINVLSTKTLALLSSLKMPDAKGLASF
Sbjct: 1  MQVRPSMKMLLGQRGGVWPASNGEDVAQSFSGGGINVLSTKTLALLSSLKMPDAKGLASF 60

[Close]
BLAST of Csa1G615200 vs. NCBI nr
Match: gi|700211405|gb|KGN66501.1| (hypothetical protein Csa_1G615200 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 

Query: 1  MQVRPSMKMLLGQRGGVWPASNGEDVAQSFSGGGINVLSTKTLALLSSLKMPDAKGLASF 60
          MQVRPSMKMLLGQRGGVWPASNGEDVAQSFSGGGINVLSTKTLALLSSLKMPDAKGLASF
Sbjct: 1  MQVRPSMKMLLGQRGGVWPASNGEDVAQSFSGGGINVLSTKTLALLSSLKMPDAKGLASF 60

The following BLAST results are available for this feature:
BLAST of Csa1G615200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M2U8_CUCSA9.0e-25100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G615200 PE=4 SV=1[more]
BLAST of Csa1G615200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211405|gb|KGN66501.1|1.3e-24100.00hypothetical protein Csa_1G615200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G615200.1Csa1G615200.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G615200CSPI01G30520Wild cucumber (PI 183967)cpicuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G615200Silver-seed gourdcarcuB0457
Csa1G615200Silver-seed gourdcarcuB0499
Csa1G615200Silver-seed gourdcarcuB0551
Csa1G615200Silver-seed gourdcarcuB0932
Csa1G615200Watermelon (97103) v2cuwmbB030
Csa1G615200Watermelon (97103) v2cuwmbB042
Csa1G615200Wax gourdcuwgoB021
Csa1G615200Wax gourdcuwgoB096
Csa1G615200Cucumber (Chinese Long) v2cucuB043
Csa1G615200Cucumber (Gy14) v1cgycuB165
Csa1G615200Cucumber (Gy14) v1cgycuB471
Csa1G615200Cucurbita maxima (Rimu)cmacuB057
Csa1G615200Cucurbita maxima (Rimu)cmacuB085
Csa1G615200Cucurbita maxima (Rimu)cmacuB537
Csa1G615200Cucurbita moschata (Rifu)cmocuB075
Csa1G615200Cucurbita moschata (Rifu)cmocuB047
Csa1G615200Cucurbita moschata (Rifu)cmocuB528
Csa1G615200Cucurbita moschata (Rifu)cmocuB566
Csa1G615200Melon (DHL92) v3.5.1cumeB041
Csa1G615200Melon (DHL92) v3.5.1cumeB072
Csa1G615200Watermelon (Charleston Gray)cuwcgB034
Csa1G615200Watermelon (Charleston Gray)cuwcgB046
Csa1G615200Watermelon (97103) v1cuwmB020
Csa1G615200Watermelon (97103) v1cuwmB071
Csa1G615200Cucurbita pepo (Zucchini)cpecuB349
Csa1G615200Cucurbita pepo (Zucchini)cpecuB652
Csa1G615200Cucurbita pepo (Zucchini)cpecuB703
Csa1G615200Bottle gourd (USVL1VR-Ls)culsiB003
Csa1G615200Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G615200Cucumber (Gy14) v2cgybcuB002
Csa1G615200Cucumber (Gy14) v2cgybcuB243
Csa1G615200Melon (DHL92) v3.6.1cumedB033
Csa1G615200Melon (DHL92) v3.6.1cumedB067