Csa1G589740 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G589740
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 22386647 .. 22387399 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCTTATTGTAAATTATTTATTCTTTCCTTAAATGATCACTTCCATGGAAAATTAATGTCCGATTGCAACCTCATCTCGGCCGCGGAGGATTTGAAATCAGAGGAAGACAGGCTAGCAGCAGACAAATGGCAGCTCGCCATCATGAAGCTGAGGTGCTGTGGATGTTGGATGATTCTTACAAGTGCAATATGGATGCAGCAATCATCTATCAGAAACTCACAGGAAGACAATGTCACAATGGAGCATTTTATAACCTCAAATGGGCATGTTAGTCTTGGAAAACGATGTTGGGAACTCACAGAAGGCAATGTTAGCCTCAGAACAAAGTCAGTCTTCACCAGATTTGGGAGTGGTAAATTCTTTGATTGTTTAGCAATTGCTTTGGACAAATTTTCAACATGCTACAACCTTTCTTTGATGTCCTGCTAGATAAGGAACAATGGGATGATAGAAGGTCTCCTCACAAATCAAAGATGCAACCAAATGGCCCATCATCTGGCAAACCATCTTAGAACATCAACAGCACTAGTGTCGATCGAAGACCATTCCCTTAGGTGCATTCTGCTCGTAAACCTTTATGTTTCTTTTTCTCATGTGGTTTTTAGTTTTGTTTCTCCAAGCTTTCTGTACAATTAGTATGATATTAGAAAGGGATATTATAGGTAATTAACTAGTAGTGTGATGATTTTATATAGAGTTCAGTTGTGACATTTTGGTGAGAGTTTATATTGTAGGACTTTGAAAGAGAGGC

mRNA sequence

ATGTCCGATTGCAACCTCATCTCGGCCGCGGAGGATTTGAAATCAGAGGAAGACAGGCTAGCAGCAGACAAATGGCAGCTCGCCATCATGAAGCTGAGGTGCTGTGGATGTTGGATGATTCTTACAAGTGCAATATGGATGCAGCAATCATCTATCAGAAACTCACAGGAAGACAATGTCACAATGGAGCATTTTATAACCTCAAATGGGCATGTTAGTCTTGGAAAACGATGTTGGGAACTCACAGAAGGCAATGTTAGCCTCAGAACAAAGTCAGTCTTCACCAGATTTGGGAGTGATAAGGAACAATGGGATGATAGAAGGTCTCCTCACAAATCAAAGATGCAACCAAATGGCCCATCATCTGGCAAACCATCTTAG

Coding sequence (CDS)

ATGTCCGATTGCAACCTCATCTCGGCCGCGGAGGATTTGAAATCAGAGGAAGACAGGCTAGCAGCAGACAAATGGCAGCTCGCCATCATGAAGCTGAGGTGCTGTGGATGTTGGATGATTCTTACAAGTGCAATATGGATGCAGCAATCATCTATCAGAAACTCACAGGAAGACAATGTCACAATGGAGCATTTTATAACCTCAAATGGGCATGTTAGTCTTGGAAAACGATGTTGGGAACTCACAGAAGGCAATGTTAGCCTCAGAACAAAGTCAGTCTTCACCAGATTTGGGAGTGATAAGGAACAATGGGATGATAGAAGGTCTCCTCACAAATCAAAGATGCAACCAAATGGCCCATCATCTGGCAAACCATCTTAG

Protein sequence

MSDCNLISAAEDLKSEEDRLAADKWQLAIMKLRCCGCWMILTSAIWMQQSSIRNSQEDNVTMEHFITSNGHVSLGKRCWELTEGNVSLRTKSVFTRFGSDKEQWDDRRSPHKSKMQPNGPSSGKPS*
Homology
[Close]
BLAST of Csa1G589740 vs. TrEMBL
Match: A0A0A0LZH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G589740 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-68
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MSDCNLISAAEDLKSEEDRLAADKWQLAIMKLRCCGCWMILTSAIWMQQSSIRNSQEDNV 60
           MSDCNLISAAEDLKSEEDRLAADKWQLAIMKLRCCGCWMILTSAIWMQQSSIRNSQEDNV
Sbjct: 1   MSDCNLISAAEDLKSEEDRLAADKWQLAIMKLRCCGCWMILTSAIWMQQSSIRNSQEDNV 60

Query: 61  TMEHFITSNGHVSLGKRCWELTEGNVSLRTKSVFTRFGSDKEQWDDRRSPHKSKMQPNGP 120
           TMEHFITSNGHVSLGKRCWELTEGNVSLRTKSVFTRFGSDKEQWDDRRSPHKSKMQPNGP
Sbjct: 61  TMEHFITSNGHVSLGKRCWELTEGNVSLRTKSVFTRFGSDKEQWDDRRSPHKSKMQPNGP 120

Query: 121 SSGKPS 127
           SSGKPS
Sbjct: 121 SSGKPS 126

[Close]
BLAST of Csa1G589740 vs. NCBI nr
Match: gi|700211171|gb|KGN66267.1| (hypothetical protein Csa_1G589740 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 3.0e-68
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1 

Query: 1   MSDCNLISAAEDLKSEEDRLAADKWQLAIMKLRCCGCWMILTSAIWMQQSSIRNSQEDNV 60
           MSDCNLISAAEDLKSEEDRLAADKWQLAIMKLRCCGCWMILTSAIWMQQSSIRNSQEDNV
Sbjct: 1   MSDCNLISAAEDLKSEEDRLAADKWQLAIMKLRCCGCWMILTSAIWMQQSSIRNSQEDNV 60

Query: 61  TMEHFITSNGHVSLGKRCWELTEGNVSLRTKSVFTRFGSDKEQWDDRRSPHKSKMQPNGP 120
           TMEHFITSNGHVSLGKRCWELTEGNVSLRTKSVFTRFGSDKEQWDDRRSPHKSKMQPNGP
Sbjct: 61  TMEHFITSNGHVSLGKRCWELTEGNVSLRTKSVFTRFGSDKEQWDDRRSPHKSKMQPNGP 120

Query: 121 SSGKPS 127
           SSGKPS
Sbjct: 121 SSGKPS 126

The following BLAST results are available for this feature:
BLAST of Csa1G589740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZH1_CUCSA2.1e-68100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G589740 PE=4 SV=1[more]
BLAST of Csa1G589740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700211171|gb|KGN66267.1|3.0e-68100.00hypothetical protein Csa_1G589740 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G589740.1Csa1G589740.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G589740CSPI01G28400Wild cucumber (PI 183967)cpicuB001
Csa1G589740Cucsa.155450Cucumber (Gy14) v1cgycuB222
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G589740Melon (DHL92) v3.5.1cumeB039
Csa1G589740Melon (DHL92) v3.5.1cumeB041
Csa1G589740Melon (DHL92) v3.5.1cumeB070
Csa1G589740Melon (DHL92) v3.5.1cumeB079
Csa1G589740Watermelon (Charleston Gray)cuwcgB000
Csa1G589740Watermelon (Charleston Gray)cuwcgB008
Csa1G589740Watermelon (Charleston Gray)cuwcgB046
Csa1G589740Watermelon (Charleston Gray)cuwcgB087
Csa1G589740Watermelon (97103) v1cuwmB001
Csa1G589740Watermelon (97103) v1cuwmB020
Csa1G589740Watermelon (97103) v1cuwmB032
Csa1G589740Watermelon (97103) v1cuwmB072
Csa1G589740Cucurbita pepo (Zucchini)cpecuB126
Csa1G589740Cucurbita pepo (Zucchini)cpecuB362
Csa1G589740Cucurbita pepo (Zucchini)cpecuB652
Csa1G589740Cucurbita pepo (Zucchini)cpecuB806
Csa1G589740Bottle gourd (USVL1VR-Ls)culsiB013
Csa1G589740Bottle gourd (USVL1VR-Ls)culsiB038
Csa1G589740Bottle gourd (USVL1VR-Ls)culsiB055
Csa1G589740Bottle gourd (USVL1VR-Ls)culsiB058
Csa1G589740Cucumber (Gy14) v2cgybcuB002
Csa1G589740Cucumber (Gy14) v2cgybcuB053
Csa1G589740Cucumber (Gy14) v2cgybcuB155
Csa1G589740Cucumber (Gy14) v2cgybcuB293
Csa1G589740Melon (DHL92) v3.6.1cumedB032
Csa1G589740Melon (DHL92) v3.6.1cumedB033
Csa1G589740Melon (DHL92) v3.6.1cumedB064
Csa1G589740Melon (DHL92) v3.6.1cumedB074
Csa1G589740Silver-seed gourdcarcuB0101
Csa1G589740Silver-seed gourdcarcuB0597
Csa1G589740Silver-seed gourdcarcuB0627
Csa1G589740Silver-seed gourdcarcuB0901
Csa1G589740Silver-seed gourdcarcuB0909
Csa1G589740Watermelon (97103) v2cuwmbB021
Csa1G589740Watermelon (97103) v2cuwmbB042
Csa1G589740Watermelon (97103) v2cuwmbB089
Csa1G589740Wax gourdcuwgoB005
Csa1G589740Wax gourdcuwgoB075
Csa1G589740Wax gourdcuwgoB076
Csa1G589740Wax gourdcuwgoB094
Csa1G589740Cucumber (Chinese Long) v2cucuB010
Csa1G589740Cucumber (Chinese Long) v2cucuB024
Csa1G589740Cucumber (Chinese Long) v2cucuB046
Csa1G589740Cucumber (Gy14) v1cgycuB148
Csa1G589740Cucumber (Gy14) v1cgycuB503
Csa1G589740Cucurbita maxima (Rimu)cmacuB049
Csa1G589740Cucurbita maxima (Rimu)cmacuB085
Csa1G589740Cucurbita maxima (Rimu)cmacuB160
Csa1G589740Cucurbita maxima (Rimu)cmacuB349
Csa1G589740Cucurbita maxima (Rimu)cmacuB434
Csa1G589740Cucurbita maxima (Rimu)cmacuB778
Csa1G589740Cucurbita moschata (Rifu)cmocuB075
Csa1G589740Cucurbita moschata (Rifu)cmocuB038
Csa1G589740Cucurbita moschata (Rifu)cmocuB145
Csa1G589740Cucurbita moschata (Rifu)cmocuB867