Csa1G572410 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G572410
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Breast carcinoma amplified sequence, putative
Location	Chr1 : 21280660 .. 21283475 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATATTTGCGATCCCGTGTACAGCAACCTTACCAGGGTAGCAATGGATAAAATTTCTGATATCTTTCACAATTTAGGTAAGTATGCGTGTTGGTGCAAAATGAATTAGGTTCTTGAAACCTGTGATGCAAAATATTTATTTTGAAGCTTTGCATGTCTAATTGTTGCATAACTTCTCTTTGAGGATACTACCGATATCTTAATCCATTTGTTCTTTTATTTCAGTAGTCCTTTGCTGTTTTTGTGCGCATTTCTTTCAGTCTTTAAGATAACGATTTATGTGAGTAAGATTTGTGACATTGTTAGGTATTCAAACACAGAAAATATATGAAAACAACAAAGATAAATGATTGTAATATGAAGGAAGAAATTACAAAATTAATAAGCTTTCGAGAAAGTTCTCTCTCCCAAAGTCTCTCCTAAAGTCTCCACAGTGGATAATGCATACCCAAAAGATGATCTCCCCCCTAGATGCCCAACTCCCCTTATTTATAACACCAATGCACCACTCTCTAATTCCCACTATGGCCTTGTTACTATCCGACTAATATTTCCAATACATGTTCTGGACACTTACTTGATACTGAATTGCTCATCTTAATGACATGCAATTACATATCATTTAGCGAATTGTGAAGGCACTTCATTGGCTGAAAGTTGGAGTTGTTGGTTGCTTTTGCAGGAGCCATGATGGAGCAAGAAGCTCTAGCCCAAGTTTAGATTTTCATGGTGCTGGAATGAAGTATTCAGAAGGTGTTACTATTTCAGATTTAAAGTTAAACTCACCTGGCTTGGAGGAAAATTCAGATGGTTATTATAAGCTTTTCTTCTTTTTGTGTTTATCATCAATTCACTAAAATCCAGCGTCTCTTTTCCCCTAATTTTCTAAATTGATTTTCAGGTATATCTTATCCACCCATAGCCAAGTCTGTGGGTGACATTAAGATGGAAGAAAAGGATGGATCTGTTTTGCCCTCACCAGTAATGAAAGAGAACTCTTTTCAGGAGCGGGCCTCTGTTTCCTCTAAACAATCTAGCACCGGATTTTCCCCAGTTGAAGGCAGTGATTTTACTAACAGCCCATCAACTGTGACAAGTTGCTCACTCTCCACTGATAGAACTATTTTAAAAGCGGTTCAGTCTTCCAAACGTGGAGGAGCCAGTGAGGGCTCAAATACAAGTTCCAACCGTTCTGACTTGAGTATGAATATTCTTGATGAGGGACCAATGGGTGACTCATTTGATTATGAACCATTCTTTCAAGAGGAGTATTGTAAAGCGACGGGTCTTAGTAACTGCCGTGACCCAGCAGAAGCTGTAGCCGACGACATGGACAGTAGTGGTAGCCCCCATTACAGGGAGAAATCTGAGGAAGATGGGGACACTGATGACATGCTTGGTGGTGTATTTGCTTTCTCTGAGGAAGGTATAAATTGGGTGAATTTATTTATTTTAATACACATTCTTATTTATAGCATGGCTCTTGTGGAAGCAAAATCTGTTGTCCTGTTGCCATGGTTAATGGCTCTGCAGTACTAAGGAATTAAGTTGACCAATTACCAAATTTAACACGCATGCACACACAATCTCACAATCTGTAGGGTGACAGTATTAAAGGTACTATGGATGTAGCAAAAAATGAAAAAAAGGTATGGATGTAACCTAAATGTGCTTTTGAAATAAATTGAAAGCATATAAGGTGTGAAGTGCAAAGGCACAACATGCAGAGTTCTTTTGGCCCAAGTGTTCGACTGAAAAGTACTTCAGAAATATTTTTAACAAGCGTATAACCAAATGGAGAAACGATTTGCACCCTGATAGAAGACATTTCACCCATAGTGGCTTTGAGATTCCAATAGATGCTTGTTGATGGTTGTGATTCATTGAAGTGAAGTGATGGTTCTGTATAGATTACACGATTGGTAGAAACCAAAAACTTATATGGCTCTTCGTTTTTCAAGTTTTTTTGCTGATTTCTCTTATATGGTTGTGATTCATTGAAGTGAAGAGATTTATGCTTAATTTGGAATGCCTTTATTTTTCCACCATAGAATACTTCTTACGTTGTACTCGGTATTTTTTCTCTGTTCCATTCTACTTGAAGCATTAATCTCTTTCTGTTTTTTCAATGAAAGCTTTGTTCCTTGCAAAAACTTATACCTCTTTGTTTATATTTCAAATAAATTGAAGGTTTCATTATTTGACTTTCCTGATGTGCTTAAAATAGCAAGATATGAATACCTATGATGTGTATATTTTAGTTGCATATCTGTATATAAACAGCTACGTGTCTTAGATATTGAGTTAAATCTCTAACTGTGACGTTTCTTTCTTGACAGCGTCATTCTTGTGTTCGGTTTACTCATATATAGAGTTCTATTGACAGCATCATTCTTTAATTTTATCCCACAAATTCGTTTTCTGCAGGATAGCACTCCTTTGCATGTCAGTAATATGCCGCAATACTCAACTGTTGGGATTTAAAATGGCTGAGAGAACTGTCTGGTGGTTGTCGTCGTGGTGATAAAGCAAGCGACGTATCCTAATTGATAAAAACTGAGGTTGTTGGGTTTCATTCAACAAACTACAAATTCTACTGACAAAATAGAAGTGATATGTTTATTGATGGTAGCAATGGTGGGACTGATAACATGGTTTCCTCTTCTCTTCTTTTCTCCCTTTTGATCTCTGTGTACATACTTGTAAATCTAAAATTCATAGTTCAAGTGATTTGTGTGGTCAGGTTCTTACCAATGCTGTGTAATATTATTATTATTATTCATTCTTCGAAGAAAAATGAAAAAGAAAAAA

mRNA sequence

ATGAAAAATATTTGCGATCCCGTGTACAGCAACCTTACCAGGGTAGCAATGGATAAAATTTCTGATATCTTTCACAATTTAGTCTTTAAGATAACGATTTATGTGAGTAAGATTTGTGACATTGTTAGGAGCCATGATGGAGCAAGAAGCTCTAGCCCAAGTTTAGATTTTCATGGTGCTGGAATGAAGTATTCAGAAGGTGTTACTATTTCAGATTTAAAGTTAAACTCACCTGGCTTGGAGGAAAATTCAGATGGTATATCTTATCCACCCATAGCCAAGTCTGTGGGTGACATTAAGATGGAAGAAAAGGATGGATCTGTTTTGCCCTCACCAGTAATGAAAGAGAACTCTTTTCAGGAGCGGGCCTCTGTTTCCTCTAAACAATCTAGCACCGGATTTTCCCCAGTTGAAGGCAGTGATTTTACTAACAGCCCATCAACTGTGACAAGTTGCTCACTCTCCACTGATAGAACTATTTTAAAAGCGGTTCAGTCTTCCAAACGTGGAGGAGCCAGTGAGGGCTCAAATACAAGTTCCAACCGTTCTGACTTGAGTATGAATATTCTTGATGAGGGACCAATGGGTGACTCATTTGATTATGAACCATTCTTTCAAGAGGAGTATTGTAAAGCGACGGGTCTTAGTAACTGCCGTGACCCAGCAGAAGCTGTAGCCGACGACATGGACAGTAGTGGTAGCCCCCATTACAGGGAGAAATCTGAGGAAGATGGGGACACTGATGACATGCTTGGTGGTGTATTTGCTTTCTCTGAGGAAGGATAG

Coding sequence (CDS)

ATGAAAAATATTTGCGATCCCGTGTACAGCAACCTTACCAGGGTAGCAATGGATAAAATTTCTGATATCTTTCACAATTTAGTCTTTAAGATAACGATTTATGTGAGTAAGATTTGTGACATTGTTAGGAGCCATGATGGAGCAAGAAGCTCTAGCCCAAGTTTAGATTTTCATGGTGCTGGAATGAAGTATTCAGAAGGTGTTACTATTTCAGATTTAAAGTTAAACTCACCTGGCTTGGAGGAAAATTCAGATGGTATATCTTATCCACCCATAGCCAAGTCTGTGGGTGACATTAAGATGGAAGAAAAGGATGGATCTGTTTTGCCCTCACCAGTAATGAAAGAGAACTCTTTTCAGGAGCGGGCCTCTGTTTCCTCTAAACAATCTAGCACCGGATTTTCCCCAGTTGAAGGCAGTGATTTTACTAACAGCCCATCAACTGTGACAAGTTGCTCACTCTCCACTGATAGAACTATTTTAAAAGCGGTTCAGTCTTCCAAACGTGGAGGAGCCAGTGAGGGCTCAAATACAAGTTCCAACCGTTCTGACTTGAGTATGAATATTCTTGATGAGGGACCAATGGGTGACTCATTTGATTATGAACCATTCTTTCAAGAGGAGTATTGTAAAGCGACGGGTCTTAGTAACTGCCGTGACCCAGCAGAAGCTGTAGCCGACGACATGGACAGTAGTGGTAGCCCCCATTACAGGGAGAAATCTGAGGAAGATGGGGACACTGATGACATGCTTGGTGGTGTATTTGCTTTCTCTGAGGAAGGATAG

Protein sequence

MKNICDPVYSNLTRVAMDKISDIFHNLVFKITIYVSKICDIVRSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG*

Homology

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BLAST of Csa1G572410 vs. Swiss-Prot
Match: AT18H_ARATH (Autophagy-related protein 18h OS=Arabidopsis thaliana GN=ATG18H PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.9e-09
Identity = 49/129 (37.98%), Postives = 63/129 (48.84%), Query Frame = 1


Query: 135 SPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSSNRSDLSMNILDEG- 194
           S V+ +D+ +  + V    L  + ++    +     G S  SN SSNRSD+SMN  DEG 
Sbjct: 817 SAVKDTDYIDDDAHV----LPKNASLPAETKIENSSGISGDSNVSSNRSDMSMNAADEGE 876

Query: 195 -PMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREKSEEDGDTDDMLG 254
            P+  S ++E FF+E     T         E    D  S G      K ++D D DDMLG
Sbjct: 877 GPIDGSPNFEQFFEEVVSNET-------VTETEHKDAPSDG------KLDDDED-DDMLG 927

Query: 255 GVFAFSEEG 262
           GVFAFSEEG
Sbjct: 937 GVFAFSEEG 927

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BLAST of Csa1G572410 vs. TrEMBL
Match: A0A0A0LW47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572410 PE=4 SV=1)

HSP 1 Score: 523.5 bits (1347), Expect = 1.5e-145
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1


Query: 1   MKNICDPVYSNLTRVAMDKISDIFHNLVFKITIYVSKICDIVRSHDGARSSSPSLDFHGA 60
           MKNICDPVYSNLTRVAMDKISDIFHNLVFKITIYVSKICDIVRSHDGARSSSPSLDFHGA
Sbjct: 1   MKNICDPVYSNLTRVAMDKISDIFHNLVFKITIYVSKICDIVRSHDGARSSSPSLDFHGA 60

Query: 61  GMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLPSPVMKENSFQ 120
           GMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLPSPVMKENSFQ
Sbjct: 61  GMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLPSPVMKENSFQ 120

Query: 121 ERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSS 180
           ERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSS
Sbjct: 121 ERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSS 180

Query: 181 NRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREK 240
           NRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREK
Sbjct: 181 NRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREK 240

Query: 241 SEEDGDTDDMLGGVFAFSEEG 262
           SEEDGDTDDMLGGVFAFSEEG
Sbjct: 241 SEEDGDTDDMLGGVFAFSEEG 261

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BLAST of Csa1G572410 vs. TrEMBL
Match: W9SH94_9ROSA (Breast carcinoma-amplified sequence 3 OS=Morus notabilis GN=L484_020673 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.8e-43
Identity = 114/230 (49.57%), Postives = 142/230 (61.74%), Query Frame = 1


Query: 42   VRSHDGARS---SSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSD----GISYPPIAK 101
            ++S+ G RS   S  S+D H A  KYS+   IS  +L S G  E++D    G SYP + +
Sbjct: 797  IQSNWGDRSLVGSHSSVDSHEAKEKYSDNAVISHAQLASTGSSEHADSGYLGDSYPSLLQ 856

Query: 102  SVGDIKMEEKDGSVLPSPVMKENSFQE---RASVSSKQSSTGFSPVEGSDFTNSPSTVTS 161
            S    K      S+L S +  ++S  +     S  S+QS++  S VE  +F+N  ST+T 
Sbjct: 857  SGNKSKGANGGRSILASSLQNQSSANKDVVSVSSRSRQSASDVSHVEDRNFSNGVSTLTG 916

Query: 162  CSLSTDRTILKAVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCK 221
             SLS DRTI K +QS   G +SEGSN SSNRSD SMNILDE  + DS D+E FFQE YC 
Sbjct: 917  VSLSADRTIAKGIQSVNGGESSEGSNVSSNRSDTSMNILDEAQVHDSLDFEQFFQEGYCN 976

Query: 222  ATGLSNCRDPAEAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 262
            A+ LS C +  E V  D+DSS SP  REK EEDGD DDMLGGVFAFSEEG
Sbjct: 977  ASALSGCPESTEVVT-DVDSS-SPCDREKCEEDGDNDDMLGGVFAFSEEG 1024

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BLAST of Csa1G572410 vs. TrEMBL
Match: M5WK31_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000848mg PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.5e-41
Identity = 110/212 (51.89%), Postives = 134/212 (63.21%), Query Frame = 1


Query: 51  SSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLP 110
           SS S D H A   + E   ISD K+   G  EN D          VG   +   D     
Sbjct: 778 SSSSSDSHEAKENFQEKGGISDDKVAPTGSAENPD----------VGRSFLVSPD----- 837

Query: 111 SPVMKENSFQERAS-VSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKR 170
           SP++ ++S  +    +SSKQ  +G S VE S+++NS ST+T+ SLS DRT  K VQS   
Sbjct: 838 SPLLNQSSTNKNIMLISSKQPISGVSLVENSNYSNSLSTLTTSSLSADRTFAKEVQSVNS 897

Query: 171 GGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDM 230
           GGASEGSN SSNRSDLSMNILDEGP+ +S D+E FF E YCKA+ LSN R+  E V  D+
Sbjct: 898 GGASEGSNISSNRSDLSMNILDEGPVQESLDFEQFFHEGYCKASPLSNFRESTEVVT-DV 957

Query: 231 DSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 262
           DSS SP  R K EEDGD+D+MLGG+FAFSEEG
Sbjct: 958 DSS-SPRDRGKCEEDGDSDEMLGGIFAFSEEG 972

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BLAST of Csa1G572410 vs. TrEMBL
Match: B9I822_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02940g PE=4 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-40
Identity = 109/225 (48.44%), Postives = 142/225 (63.11%), Query Frame = 1


Query: 43  RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGIS----YPPIAKSVGD 102
           R+  G R S+  L     G+K SE   IS  ++ SPG   NSDG S    YPP+ ++V  
Sbjct: 769 RAQGGVRYST--LSSGSRGVKESEDAVISHSEIVSPGSVPNSDGGSSTKFYPPMMQAVNS 828

Query: 103 IKMEEKDGSVLPSPVMKENSF-QERASVSSKQSSTGFSPVEGSDFTNSPST-VTSCSLST 162
               E   S+L SP++ E+S  ++  S+S KQ+  G +  E S+F NS  T +T+  L+ 
Sbjct: 829 -NAGEGGISLLASPILYESSTNKDSGSISFKQTQIGATSAENSNFINSNVTSLTNGPLTA 888

Query: 163 DRTILKAVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLS 222
           +R I K VQSS+ G  SE SN SSNRSDLSMNI+DEGP  DS D+E FFQE YCKA+ L 
Sbjct: 889 ERLIAKEVQSSESGVTSEASNISSNRSDLSMNIIDEGPANDSQDFEHFFQEGYCKASDLK 948

Query: 223 NCRDPAEAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 262
            C++  E V   +D++ SP   +KSEEDGD DDMLGGVF+FSEEG
Sbjct: 949 ECQESTE-VLTFVDNNSSPCDVDKSEEDGDNDDMLGGVFSFSEEG 989

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BLAST of Csa1G572410 vs. TrEMBL
Match: A0A0B0NER8_GOSAR (Breast carcinoma-amplified sequence 3 OS=Gossypium arboreum GN=F383_18590 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.2e-40
Identity = 105/207 (50.72%), Postives = 133/207 (64.25%), Query Frame = 1


Query: 60  AGMKYSEGVTISDLKLNSPGLEENSDG----ISYPPIAKSVGDIKMEEKDGSVLPSPVMK 119
           A  ++S+   IS  KL SP   ENSD      SYP   +S  D    +   SVL S ++ 
Sbjct: 791 AKARFSQVTVISHSKLMSPSSVENSDSGSTRSSYPSGIQSGKDDDGVKGQNSVLASTMLN 850

Query: 120 ENSFQERA-SVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASE 179
           +++  + A SVS  QS  G   +E ++ TNS S++TS SLS  RT+ K VQ     G S+
Sbjct: 851 QSNLNKDAGSVSFNQSKVGVCHIEDTNSTNSMSSLTSGSLSGGRTVAKEVQFPNSDGTSD 910

Query: 180 GSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGS 239
            SNTSSNRSDLSMN+LDEGP+ +S D+E FFQEEYCKA  LS C +P + +  D+D+S S
Sbjct: 911 VSNTSSNRSDLSMNMLDEGPVNESPDFEQFFQEEYCKALPLSACSEPKKVIT-DVDNSIS 970

Query: 240 PHYREKSEEDGDTDDMLGGVFAFSEEG 262
           P  REKSEE+ D DDMLGGVFAFSEEG
Sbjct: 971 PCDREKSEEEVDNDDMLGGVFAFSEEG 996

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BLAST of Csa1G572410 vs. TAIR10
Match: AT1G54710.1 (AT1G54710.1 homolog of yeast autophagy 18 (ATG18) H)

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 49/129 (37.98%), Postives = 63/129 (48.84%), Query Frame = 1


Query: 135 SPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSSNRSDLSMNILDEG- 194
           S V+ +D+ +  + V    L  + ++    +     G S  SN SSNRSD+SMN  DEG 
Sbjct: 817 SAVKDTDYIDDDAHV----LPKNASLPAETKIENSSGISGDSNVSSNRSDMSMNAADEGE 876

Query: 195 -PMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREKSEEDGDTDDMLG 254
            P+  S ++E FF+E     T         E    D  S G      K ++D D DDMLG
Sbjct: 877 GPIDGSPNFEQFFEEVVSNET-------VTETEHKDAPSDG------KLDDDED-DDMLG 927

Query: 255 GVFAFSEEG 262
           GVFAFSEEG
Sbjct: 937 GVFAFSEEG 927

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BLAST of Csa1G572410 vs. NCBI nr
Match: gi|700211024|gb|KGN66120.1| (hypothetical protein Csa_1G572410 [Cucumis sativus])

HSP 1 Score: 523.5 bits (1347), Expect = 2.2e-145
Identity = 261/261 (100.00%), Postives = 261/261 (100.00%), Query Frame = 1


Query: 1   MKNICDPVYSNLTRVAMDKISDIFHNLVFKITIYVSKICDIVRSHDGARSSSPSLDFHGA 60
           MKNICDPVYSNLTRVAMDKISDIFHNLVFKITIYVSKICDIVRSHDGARSSSPSLDFHGA
Sbjct: 1   MKNICDPVYSNLTRVAMDKISDIFHNLVFKITIYVSKICDIVRSHDGARSSSPSLDFHGA 60

Query: 61  GMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLPSPVMKENSFQ 120
           GMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLPSPVMKENSFQ
Sbjct: 61  GMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKMEEKDGSVLPSPVMKENSFQ 120

Query: 121 ERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSS 180
           ERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSS
Sbjct: 121 ERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILKAVQSSKRGGASEGSNTSS 180

Query: 181 NRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREK 240
           NRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREK
Sbjct: 181 NRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPAEAVADDMDSSGSPHYREK 240

Query: 241 SEEDGDTDDMLGGVFAFSEEG 262
           SEEDGDTDDMLGGVFAFSEEG
Sbjct: 241 SEEDGDTDDMLGGVFAFSEEG 261

[Close]

BLAST of Csa1G572410 vs. NCBI nr
Match: gi|449436024|ref|XP_004135794.1| (PREDICTED: autophagy-related protein 18h isoform X1 [Cucumis sativus])

HSP 1 Score: 439.5 bits (1129), Expect = 4.1e-120
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1


Query: 43  RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKME 102
           RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKME
Sbjct: 771 RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKME 830

Query: 103 EKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILK 162
           EKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILK
Sbjct: 831 EKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILK 890

Query: 163 AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPA 222
           AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPA
Sbjct: 891 AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPA 950

Query: 223 EAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 262
           EAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG
Sbjct: 951 EAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 989

[Close]

BLAST of Csa1G572410 vs. NCBI nr
Match: gi|659099649|ref|XP_008450707.1| (PREDICTED: autophagy-related protein 18h isoform X1 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 2.5e-117
Identity = 215/219 (98.17%), Postives = 215/219 (98.17%), Query Frame = 1


Query: 43  RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKME 102
           RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKME
Sbjct: 772 RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKME 831

Query: 103 EKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILK 162
           EKDGSVLPS VMKENSFQERASVSSKQSS GFSPVEGSDFTNSPSTVTSCSLSTDRTILK
Sbjct: 832 EKDGSVLPSTVMKENSFQERASVSSKQSSIGFSPVEGSDFTNSPSTVTSCSLSTDRTILK 891

Query: 163 AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPA 222
           AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATG SNCRDPA
Sbjct: 892 AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGRSNCRDPA 951

Query: 223 EAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 262
           EAV DDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG
Sbjct: 952 EAVTDDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 990

[Close]

BLAST of Csa1G572410 vs. NCBI nr
Match: gi|778662596|ref|XP_011659915.1| (PREDICTED: autophagy-related protein 18h isoform X2 [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 1.3e-105
Identity = 200/219 (91.32%), Postives = 200/219 (91.32%), Query Frame = 1


Query: 43  RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKME 102
           RSHDGARSSSPSLDFHGAGMKYSE                   GISYPPIAKSVGDIKME
Sbjct: 771 RSHDGARSSSPSLDFHGAGMKYSE-------------------GISYPPIAKSVGDIKME 830

Query: 103 EKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILK 162
           EKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILK
Sbjct: 831 EKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILK 890

Query: 163 AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPA 222
           AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPA
Sbjct: 891 AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPA 950

Query: 223 EAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 262
           EAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG
Sbjct: 951 EAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 970

[Close]

BLAST of Csa1G572410 vs. NCBI nr
Match: gi|659099651|ref|XP_008450709.1| (PREDICTED: autophagy-related protein 18h isoform X2 [Cucumis melo])

HSP 1 Score: 382.1 bits (980), Expect = 7.8e-103
Identity = 196/219 (89.50%), Postives = 196/219 (89.50%), Query Frame = 1


Query: 43  RSHDGARSSSPSLDFHGAGMKYSEGVTISDLKLNSPGLEENSDGISYPPIAKSVGDIKME 102
           RSHDGARSSSPSLDFHGAGMKYSE                   GISYPPIAKSVGDIKME
Sbjct: 772 RSHDGARSSSPSLDFHGAGMKYSE-------------------GISYPPIAKSVGDIKME 831

Query: 103 EKDGSVLPSPVMKENSFQERASVSSKQSSTGFSPVEGSDFTNSPSTVTSCSLSTDRTILK 162
           EKDGSVLPS VMKENSFQERASVSSKQSS GFSPVEGSDFTNSPSTVTSCSLSTDRTILK
Sbjct: 832 EKDGSVLPSTVMKENSFQERASVSSKQSSIGFSPVEGSDFTNSPSTVTSCSLSTDRTILK 891

Query: 163 AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGLSNCRDPA 222
           AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATG SNCRDPA
Sbjct: 892 AVQSSKRGGASEGSNTSSNRSDLSMNILDEGPMGDSFDYEPFFQEEYCKATGRSNCRDPA 951

Query: 223 EAVADDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 262
           EAV DDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG
Sbjct: 952 EAVTDDMDSSGSPHYREKSEEDGDTDDMLGGVFAFSEEG 971

The following BLAST results are available for this feature:

BLAST of Csa1G572410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AT18H_ARATH	2.9e-09	37.98	Autophagy-related protein 18h OS=Arabidopsis thaliana GN=ATG18H PE=2 SV=1	[more]

BLAST of Csa1G572410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW47_CUCSA	1.5e-145	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G572410 PE=4 SV=1	[more]
W9SH94_9ROSA	2.8e-43	49.57	Breast carcinoma-amplified sequence 3 OS=Morus notabilis GN=L484_020673 PE=4 SV=...	[more]
M5WK31_PRUPE	3.5e-41	51.89	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000848mg PE=4 SV=1	[more]
B9I822_POPTR	1.7e-40	48.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02940g PE=4 SV=2	[more]
A0A0B0NER8_GOSAR	2.2e-40	50.72	Breast carcinoma-amplified sequence 3 OS=Gossypium arboreum GN=F383_18590 PE=4 S...	[more]

BLAST of Csa1G572410 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G54710.1	1.7e-10	37.98	homolog of yeast autophagy 18 (ATG18) H	[more]

BLAST of Csa1G572410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211024\|gb\|KGN66120.1\|	2.2e-145	100.00	hypothetical protein Csa_1G572410 [Cucumis sativus]	[more]
gi\|449436024\|ref\|XP_004135794.1\|	4.1e-120	100.00	PREDICTED: autophagy-related protein 18h isoform X1 [Cucumis sativus]	[more]
gi\|659099649\|ref\|XP_008450707.1\|	2.5e-117	98.17	PREDICTED: autophagy-related protein 18h isoform X1 [Cucumis melo]	[more]
gi\|778662596\|ref\|XP_011659915.1\|	1.3e-105	91.32	PREDICTED: autophagy-related protein 18h isoform X2 [Cucumis sativus]	[more]
gi\|659099651\|ref\|XP_008450709.1\|	7.8e-103	89.50	PREDICTED: autophagy-related protein 18h isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0044424	intracellular part
molecular_function	GO:0000166	nucleotide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU106947	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G572410.1	Csa1G572410.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU106947	CU106947	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR13268	BREAST CARCINOMA AMPLIFIED SEQUENCE 3	coord: 70..260 score: 1.5
None	No IPR available	PANTHER	PTHR13268:SF0	BREAST CARCINOMA-AMPLIFIED SEQUENCE 3	coord: 70..260 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G572410	CSPI01G27000	Wild cucumber (PI 183967)	cpicuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G572410	Melon (DHL92) v3.6.1	cumedB033
Csa1G572410	Silver-seed gourd	carcuB0580
Csa1G572410	Watermelon (97103) v2	cuwmbB042
Csa1G572410	Wax gourd	cuwgoB108
Csa1G572410	Cucumber (Gy14) v1	cgycuB245
Csa1G572410	Cucurbita maxima (Rimu)	cmacuB099
Csa1G572410	Cucurbita moschata (Rifu)	cmocuB087
Csa1G572410	Melon (DHL92) v3.5.1	cumeB041
Csa1G572410	Watermelon (Charleston Gray)	cuwcgB046
Csa1G572410	Watermelon (97103) v1	cuwmB020
Csa1G572410	Cucurbita pepo (Zucchini)	cpecuB656
Csa1G572410	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G572410	Cucumber (Gy14) v2	cgybcuB002