Csa1G569540 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G569540
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 21024887 .. 21025391 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAACCAAGCATAATTGTAATTTCAAAGATGCTTAACCATCAATGGCTTGTTTTTTCTCTCGTTGTAACTTTAGCTTGTTTTTATTTTTGTAAAGGAGACAATGTCTCTTATGATTCAAATGCAATAATTATCAATGGCGAACGACGTGTGATTTTGTCAGGTTCAATGCATTATCCACGCAGCACTGAAGCAATGTGGCCTGATCTTATTCAAAAAGCTAAAGATGGTGGACTTGATGCAATAGAGACATACATTTTTTGGGATCGTCATGAACCTCAACGACGAAAATATGATTTCACTGGACGACTAGATTTTATCAAATTTTTTCAACTTGTTCAAGATGCTGGATTATATGTCGTGATGAGGATTGGTCCGTATGTGTGTGCAGAATGGAACTACGGAGGCTTTCCATTGTGGTTGCATAATTTGCCAGGAATCCAATTTCGAACGGACAATCAAGTCTACAAGAATGAAATGCAAACTTTTACAACAAAGATAG

mRNA sequence

ATGAATAAACCAAGCATAATTGTAATTTCAAAGATGCTTAACCATCAATGGCTTGTTTTTTCTCTCGTTGTAACTTTAGCTTGTTTTTATTTTTGTAAAGGAGACAATGTCTCTTATGATTCAAATGCAATAATTATCAATGGCGAACGACGTGTGATTTTGTCAGGATTGGTCCGTATGTGTGTGCAGAATGGAACTACGGAGGCTTTCCATTGTGGTTGCATAATTTGCCAGGAATCCAATTTCGAACGGACAATCAAGTCTACAAGAATGAAATGCAAACTTTTACAACAAAGATAG

Coding sequence (CDS)

ATGAATAAACCAAGCATAATTGTAATTTCAAAGATGCTTAACCATCAATGGCTTGTTTTTTCTCTCGTTGTAACTTTAGCTTGTTTTTATTTTTGTAAAGGAGACAATGTCTCTTATGATTCAAATGCAATAATTATCAATGGCGAACGACGTGTGATTTTGTCAGGATTGGTCCGTATGTGTGTGCAGAATGGAACTACGGAGGCTTTCCATTGTGGTTGCATAATTTGCCAGGAATCCAATTTCGAACGGACAATCAAGTCTACAAGAATGAAATGCAAACTTTTACAACAAAGATAG

Protein sequence

MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRMCVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR*

Homology

[Close]

BLAST of Csa1G569540 vs. TrEMBL
Match: A0A0A0LWF5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569540 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.0e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM 60
           MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM
Sbjct: 1   MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM 60

Query: 61  CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 100
           CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR
Sbjct: 61  CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 99

[Close]

BLAST of Csa1G569540 vs. TrEMBL
Match: A0A0A0LDH9_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_3G550690 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-08
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 16 QWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          QWL+  L  TLAC  FC G+NVSYDSNAIIINGERR+I SG +
Sbjct: 6  QWLLLDLAATLACLSFCIGNNVSYDSNAIIINGERRIIFSGSI 48

[Close]

BLAST of Csa1G569540 vs. TrEMBL
Match: A0A0A0M006_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-07
Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 12 MLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          M   QWLV     TLAC  FC GDNVSYDSNA+IINGERR+I SG +
Sbjct: 1  MFKLQWLV----ATLACLTFCIGDNVSYDSNALIINGERRIIFSGSI 43

[Close]

BLAST of Csa1G569540 vs. TrEMBL
Match: A0A0A0KJ96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136350 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-06
Identity = 30/42 (71.43%), Postives = 31/42 (73.81%), Query Frame = 1


Query: 12 MLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVI 54
          M   QWLV     TLACF FC GDNVSYDSNAIIINGER +I
Sbjct: 1  MFKLQWLV----ATLACFAFCLGDNVSYDSNAIIINGERCII 38

[Close]

BLAST of Csa1G569540 vs. TrEMBL
Match: A0A0A0KRM6_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_5G169120 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-06
Identity = 30/47 (63.83%), Postives = 32/47 (68.09%), Query Frame = 1


Query: 12 MLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          M   QW V     TLAC  FC  DNVSYDSNAIIINGERR+I SG +
Sbjct: 1  MFKLQWFV----PTLACLTFCMRDNVSYDSNAIIINGERRIIFSGSI 43

[Close]

BLAST of Csa1G569540 vs. NCBI nr
Match: gi|700210982|gb|KGN66078.1| (hypothetical protein Csa_1G569540 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 2.9e-50
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1


Query: 1   MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM 60
           MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM
Sbjct: 1   MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLVRM 60

Query: 61  CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 100
           CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR
Sbjct: 61  CVQNGTTEAFHCGCIICQESNFERTIKSTRMKCKLLQQR 99

[Close]

BLAST of Csa1G569540 vs. NCBI nr
Match: gi|778665294|ref|XP_004135782.2| (PREDICTED: beta-galactosidase 15-like [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSG 57
          MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSG
Sbjct: 1  MNKPSIIVISKMLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSG 56

[Close]

BLAST of Csa1G569540 vs. NCBI nr
Match: gi|659086605|ref|XP_008444022.1| (PREDICTED: beta-galactosidase-like [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-10
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1


Query: 12 MLNHQWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          M N QW V  +V TLACF FC GDN+SYDSNAIIINGERR+I SG +
Sbjct: 1  MFNFQWHVLIVVATLACFSFCIGDNISYDSNAIIINGERRLIFSGSI 47

[Close]

BLAST of Csa1G569540 vs. NCBI nr
Match: gi|659093706|ref|XP_008447673.1| (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 4.3e-09
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 1


Query: 16 QWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          QWLV  L+VTLAC   C GDNVSYDSNAIIINGERR+I SG +
Sbjct: 6  QWLVLHLIVTLACLSCCIGDNVSYDSNAIIINGERRIIFSGSI 48

[Close]

BLAST of Csa1G569540 vs. NCBI nr
Match: gi|778688671|ref|XP_011652808.1| (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-08
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 16 QWLVFSLVVTLACFYFCKGDNVSYDSNAIIINGERRVILSGLV 59
          QWL+  L  TLAC  FC G+NVSYDSNAIIINGERR+I SG +
Sbjct: 6  QWLLLDLAATLACLSFCIGNNVSYDSNAIIINGERRIIFSGSI 48

The following BLAST results are available for this feature:

BLAST of Csa1G569540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWF5_CUCSA	2.0e-50	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569540 PE=4 SV=1	[more]
A0A0A0LDH9_CUCSA	1.5e-08	69.77	Beta-galactosidase OS=Cucumis sativus GN=Csa_3G550690 PE=3 SV=1	[more]
A0A0A0M006_CUCSA	2.8e-07	65.96	Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1	[more]
A0A0A0KJ96_CUCSA	4.0e-06	71.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G136350 PE=4 SV=1	[more]
A0A0A0KRM6_CUCSA	4.0e-06	63.83	Beta-galactosidase OS=Cucumis sativus GN=Csa_5G169120 PE=3 SV=1	[more]

BLAST of Csa1G569540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210982\|gb\|KGN66078.1\|	2.9e-50	100.00	hypothetical protein Csa_1G569540 [Cucumis sativus]	[more]
gi\|778665294\|ref\|XP_004135782.2\|	3.0e-23	100.00	PREDICTED: beta-galactosidase 15-like [Cucumis sativus]	[more]
gi\|659086605\|ref\|XP_008444022.1\|	6.6e-10	70.21	PREDICTED: beta-galactosidase-like [Cucumis melo]	[more]
gi\|659093706\|ref\|XP_008447673.1\|	4.3e-09	74.42	PREDICTED: beta-galactosidase 15-like [Cucumis melo]	[more]
gi\|778688671\|ref\|XP_011652808.1\|	2.1e-08	69.77	PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006012	galactose metabolic process
biological_process	GO:0046486	glycerolipid metabolic process
biological_process	GO:0006027	glycosaminoglycan catabolic process
biological_process	GO:0006687	glycosphingolipid metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009341	beta-galactosidase complex
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0032559	adenyl ribonucleotide binding
molecular_function	GO:0043168	anion binding
molecular_function	GO:0004565	beta-galactosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0032550	purine ribonucleoside binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU161580	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G569540.1	Csa1G569540.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU161580	CU161580	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..28 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G569540	CSPI01G26600	Wild cucumber (PI 183967)	cpicuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G569540	Watermelon (97103) v2	cuwmbB042
Csa1G569540	Wax gourd	cuwgoB082
Csa1G569540	Wax gourd	cuwgoB107
Csa1G569540	Cucumber (Gy14) v1	cgycuB278
Csa1G569540	Cucurbita maxima (Rimu)	cmacuB059
Csa1G569540	Cucurbita maxima (Rimu)	cmacuB099
Csa1G569540	Cucurbita maxima (Rimu)	cmacuB159
Csa1G569540	Cucurbita moschata (Rifu)	cmocuB055
Csa1G569540	Cucurbita moschata (Rifu)	cmocuB087
Csa1G569540	Cucurbita moschata (Rifu)	cmocuB146
Csa1G569540	Melon (DHL92) v3.5.1	cumeB041
Csa1G569540	Watermelon (Charleston Gray)	cuwcgB046
Csa1G569540	Watermelon (97103) v1	cuwmB020
Csa1G569540	Cucurbita pepo (Zucchini)	cpecuB353
Csa1G569540	Cucurbita pepo (Zucchini)	cpecuB656
Csa1G569540	Bottle gourd (USVL1VR-Ls)	culsiB058
Csa1G569540	Cucumber (Gy14) v2	cgybcuB002
Csa1G569540	Melon (DHL92) v3.6.1	cumedB033
Csa1G569540	Silver-seed gourd	carcuB0273