Csa1G560860 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G560860
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 20493549 .. 20494027 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCAAAGAGTATGTTTGGCTTGGCACCAAACACTTTGCGAGTTCTCATTGTGCAATTGCAAACGAAAGAAGAAGAGAGAAAAGGTGGCCTATCAAGACTTCCATAAACCAGCATTTGGCGGAGAGGATGTGAGATTTACACACCAACATAGTAAGGATGATTGTTTTTTAATTTATAGTGGGTGTTGGGTGATGTTCAAGTTTGAAGGGGTACTATTCACAATTTCAAAAAATTAACTTTCTTCTTGTTTTATTTTTTGTTCAAACTTTGGCCCAGCCCAATTCACCTATTTTAAAGAACAAGGAACAATTACAAAGACTCCCCATTAAGACCAGGGGACACCCGACCTGGGCTATCACAACCCGAGAAGTGCCAACCTCCATCATCAAAATCAGCGGATACGCTGCCAAGTTACAAGATCTAGTACAAAACCAAAACTGAACATTCCCATCAAGATTAGCTTACTTCAAAACGT

mRNA sequence

ATGCATCAAAGAGTATGTTTGGCTTGGCACCAAACACTTTGCGAGTTCTCATTGTGCAATTGCAAACGAAAGAAGAAGAGAGAAAAGGTGGCCTATCAAGACTTCCATAAACCAGCATTTGGCGGAGAGGATCCCAATTCACCTATTTTAAAGAACAAGGAACAATTACAAAGACTCCCCATTAAGACCAGGGGACACCCGACCTGGGCTATCACAACCCGAGAAGTGCCAACCTCCATCATCAAAATCAGCGGATACGCTGCCAAGTTACAAGATCTAGTACAAAACCAAAACTGA

Coding sequence (CDS)

ATGCATCAAAGAGTATGTTTGGCTTGGCACCAAACACTTTGCGAGTTCTCATTGTGCAATTGCAAACGAAAGAAGAAGAGAGAAAAGGTGGCCTATCAAGACTTCCATAAACCAGCATTTGGCGGAGAGGATCCCAATTCACCTATTTTAAAGAACAAGGAACAATTACAAAGACTCCCCATTAAGACCAGGGGACACCCGACCTGGGCTATCACAACCCGAGAAGTGCCAACCTCCATCATCAAAATCAGCGGATACGCTGCCAAGTTACAAGATCTAGTACAAAACCAAAACTGA

Protein sequence

MHQRVCLAWHQTLCEFSLCNCKRKKKREKVAYQDFHKPAFGGEDPNSPILKNKEQLQRLPIKTRGHPTWAITTREVPTSIIKISGYAAKLQDLVQNQN*
Homology
[Close]
BLAST of Csa1G560860 vs. TrEMBL
Match: A0A0A0LYD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560860 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.4e-51
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MHQRVCLAWHQTLCEFSLCNCKRKKKREKVAYQDFHKPAFGGEDPNSPILKNKEQLQRLP 60
          MHQRVCLAWHQTLCEFSLCNCKRKKKREKVAYQDFHKPAFGGEDPNSPILKNKEQLQRLP
Sbjct: 1  MHQRVCLAWHQTLCEFSLCNCKRKKKREKVAYQDFHKPAFGGEDPNSPILKNKEQLQRLP 60

Query: 61 IKTRGHPTWAITTREVPTSIIKISGYAAKLQDLVQNQN 99
          IKTRGHPTWAITTREVPTSIIKISGYAAKLQDLVQNQN
Sbjct: 61 IKTRGHPTWAITTREVPTSIIKISGYAAKLQDLVQNQN 98

[Close]
BLAST of Csa1G560860 vs. NCBI nr
Match: gi|700210908|gb|KGN66004.1| (hypothetical protein Csa_1G560860 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 2.0e-51
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 1  MHQRVCLAWHQTLCEFSLCNCKRKKKREKVAYQDFHKPAFGGEDPNSPILKNKEQLQRLP 60
          MHQRVCLAWHQTLCEFSLCNCKRKKKREKVAYQDFHKPAFGGEDPNSPILKNKEQLQRLP
Sbjct: 1  MHQRVCLAWHQTLCEFSLCNCKRKKKREKVAYQDFHKPAFGGEDPNSPILKNKEQLQRLP 60

Query: 61 IKTRGHPTWAITTREVPTSIIKISGYAAKLQDLVQNQN 99
          IKTRGHPTWAITTREVPTSIIKISGYAAKLQDLVQNQN
Sbjct: 61 IKTRGHPTWAITTREVPTSIIKISGYAAKLQDLVQNQN 98

The following BLAST results are available for this feature:
BLAST of Csa1G560860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYD0_CUCSA1.4e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560860 PE=4 SV=1[more]
BLAST of Csa1G560860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210908|gb|KGN66004.1|2.0e-51100.00hypothetical protein Csa_1G560860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G560860.1Csa1G560860.1mRNA