Csa1G560820 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G560820
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionOligopeptide transporter 8
LocationChr1 : 20480178 .. 20480600 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGAGTAAGACAAAGGGGTTGCAGAAGGGCCTTGAACTCCGCGCTTACCTCTTTCTTCAAGCTTTGTTGGTTTGATTCCATCTCTTTTACTTGAGCTCGGCTCTTTTGGTCAACAATTTCATCTTACATCAAAAGTTCCCCTTGCTAGCTCCCGGTTTGCCACTGCTGGCGCTTGTTCTTCTAATGTTCGTGCCATGACACCCCTTAGTTATCGTTTCAATGTGTATGGAGCCAAAAGGTTTCCCATATATTTAAGCATCCTTTTCGTGGTGAATGGCCACAAGTACAATCAATTTTAA

mRNA sequence

ATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGACTTTGTTGGTTTGATTCCATCTCTTTTACTTGAGCTCGGCTCTTTTGGTCAACAATTTCATCTTACATCAAAAGTTCCCCTTGCTAGCTCCCGGTTTGCCACTGCTGGCGCTTGTTCTTCTAATGTTCGTGCCATGACACCCCTTAGTTATCGTTTCAATGTGTATGGAGCCAAAAGGTTTCCCATATATTTAAGCATCCTTTTCGTGGTGAATGGCCACAAGTACAATCAATTTTAA

Coding sequence (CDS)

ATGTTGCAGTTGAGACCAACTAGTTGCCGGAATAAGTTGAGTTCACCCCCAAAAAAACTGCAAGGTTTGGAATTCTTGGCTAACATTGATGGTCATGGGGAGTGTGTTCAGGCTAGGACGACAAAAGACTTTGTTGGTTTGATTCCATCTCTTTTACTTGAGCTCGGCTCTTTTGGTCAACAATTTCATCTTACATCAAAAGTTCCCCTTGCTAGCTCCCGGTTTGCCACTGCTGGCGCTTGTTCTTCTAATGTTCGTGCCATGACACCCCTTAGTTATCGTTTCAATGTGTATGGAGCCAAAAGGTTTCCCATATATTTAAGCATCCTTTTCGTGGTGAATGGCCACAAGTACAATCAATTTTAA

Protein sequence

MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQQFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQF*
Homology
[Close]
BLAST of Csa1G560820 vs. TrEMBL
Match: A0A0A0LVW4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560820 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ 60
           MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ
Sbjct: 1   MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ 60

Query: 61  QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ 120
           QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ
Sbjct: 61  QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ 120

Query: 121 F 122
           F
Sbjct: 121 F 121

[Close]
BLAST of Csa1G560820 vs. TrEMBL
Match: A0A0A0LPB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G377985 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.4e-08
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPLSY  NVYGAKRFPIY
Sbjct: 262 LGLGAFGIDWSTISSYLGSPLASPWFATANVAVGFVIVMYVMTPLSYWLNVYGAKRFPIY 321

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGH+YN
Sbjct: 322 SSSLFMANGHEYN 334

[Close]
BLAST of Csa1G560820 vs. NCBI nr
Match: gi|700210904|gb|KGN66000.1| (hypothetical protein Csa_1G560820 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 3.1e-62
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1 

Query: 1   MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ 60
           MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ
Sbjct: 1   MLQLRPTSCRNKLSSPPKKLQGLEFLANIDGHGECVQARTTKDFVGLIPSLLLELGSFGQ 60

Query: 61  QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ 120
           QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ
Sbjct: 61  QFHLTSKVPLASSRFATAGACSSNVRAMTPLSYRFNVYGAKRFPIYLSILFVVNGHKYNQ 120

Query: 121 F 122
           F
Sbjct: 121 F 121

[Close]
BLAST of Csa1G560820 vs. NCBI nr
Match: gi|659088623|ref|XP_008445079.1| (PREDICTED: oligopeptide transporter 6-like [Cucumis melo])

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-08
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPLSY  NVYGAKRFPIY
Sbjct: 264 LGLGAFGIDWSTISSYLGSPLASPWFATANVAVGFVIVMYVMTPLSYWLNVYGAKRFPIY 323

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGH+YN
Sbjct: 324 SSSLFMANGHEYN 336

[Close]
BLAST of Csa1G560820 vs. NCBI nr
Match: gi|778674368|ref|XP_004138881.2| (PREDICTED: oligopeptide transporter 6-like [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-08
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNV---RAMTPLSYRFNVYGAKRFPIY 112
           L LG+FG  +   S     PLAS  FATA      V     MTPLSY  NVYGAKRFPIY
Sbjct: 262 LGLGAFGIDWSTISSYLGSPLASPWFATANVAVGFVIVMYVMTPLSYWLNVYGAKRFPIY 321

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGH+YN
Sbjct: 322 SSSLFMANGHEYN 334

[Close]
BLAST of Csa1G560820 vs. NCBI nr
Match: gi|659088617|ref|XP_008445076.1| (PREDICTED: oligopeptide transporter 6-like [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-06
Identity = 36/73 (49.32%), Postives = 41/73 (56.16%), Query Frame = 1 

Query: 53  LELGSFGQQFHLTSKV---PLASSRFATAGACSSNVRAM---TPLSYRFNVYGAKRFPIY 112
           L +G+FG  +   S     PLAS  FAT       V  M   TPL Y  NVY AK+FPIY
Sbjct: 261 LGIGAFGIDWSTISSYLGSPLASPWFATVNIAVGFVLVMYVMTPLCYWLNVYEAKKFPIY 320

Query: 113 LSILFVVNGHKYN 120
            S LF+ NGHKYN
Sbjct: 321 SSSLFMANGHKYN 333

The following BLAST results are available for this feature:
BLAST of Csa1G560820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVW4_CUCSA2.2e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G560820 PE=4 SV=1[more]
A0A0A0LPB3_CUCSA2.4e-0854.79Uncharacterized protein OS=Cucumis sativus GN=Csa_2G377985 PE=4 SV=1[more]
BLAST of Csa1G560820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210904|gb|KGN66000.1|3.1e-62100.00hypothetical protein Csa_1G560820 [Cucumis sativus][more]
gi|659088623|ref|XP_008445079.1|3.4e-0854.79PREDICTED: oligopeptide transporter 6-like [Cucumis melo][more]
gi|778674368|ref|XP_004138881.2|3.4e-0854.79PREDICTED: oligopeptide transporter 6-like [Cucumis sativus][more]
gi|659088617|ref|XP_008445076.1|5.4e-0649.32PREDICTED: oligopeptide transporter 6-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU172023cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G560820.1Csa1G560820.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU172023CU172023transcribed_cluster