Csa1G555640 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G555640
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 20317822 .. 20318063 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTGGAGGTCACATTTGAAGTTTTGAGATGTTTGAGCCGCTGCCCACCAAGGGAAACGGGAGATTTGGACGTTTTCGGTAGGTTTTAGTTTGGAATGACAATTGACAAATGACACAGTGTAGTTTGGAATGATAGTTTTGGCCTGGAATGGCTATTGGCACAGTTTTGGTTGCCGTTGGTCTACTTGTGTTGGGCACCACTAGTTTTAATGATTTTCTAACTCATGATTGTATGTAA

mRNA sequence

ATGATTTTGGAGGTCACATTTGAAGTTTTGAGATGTTTGAGCCGCTGCCCACCAAGGGAAACGGGAGATTTGGACGTTTTCGTTTTGGTTGCCGTTGGTCTACTTGTGTTGGGCACCACTAGTTTTAATGATTTTCTAACTCATGATTGTATGTAA

Coding sequence (CDS)

ATGATTTTGGAGGTCACATTTGAAGTTTTGAGATGTTTGAGCCGCTGCCCACCAAGGGAAACGGGAGATTTGGACGTTTTCGTTTTGGTTGCCGTTGGTCTACTTGTGTTGGGCACCACTAGTTTTAATGATTTTCTAACTCATGATTGTATGTAA

Protein sequence

MILEVTFEVLRCLSRCPPRETGDLDVFVLVAVGLLVLGTTSFNDFLTHDCM*
Homology
[Close]
BLAST of Csa1G555640 vs. TrEMBL
Match: A0A0A0LY87_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555640 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.7e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MILEVTFEVLRCLSRCPPRETGDLDVFVLVAVGLLVLGTTSFNDFLTHDCM 52
          MILEVTFEVLRCLSRCPPRETGDLDVFVLVAVGLLVLGTTSFNDFLTHDCM
Sbjct: 1  MILEVTFEVLRCLSRCPPRETGDLDVFVLVAVGLLVLGTTSFNDFLTHDCM 51

[Close]
BLAST of Csa1G555640 vs. NCBI nr
Match: gi|700210883|gb|KGN65979.1| (hypothetical protein Csa_1G555640 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 9.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 

Query: 1  MILEVTFEVLRCLSRCPPRETGDLDVFVLVAVGLLVLGTTSFNDFLTHDCM 52
          MILEVTFEVLRCLSRCPPRETGDLDVFVLVAVGLLVLGTTSFNDFLTHDCM
Sbjct: 1  MILEVTFEVLRCLSRCPPRETGDLDVFVLVAVGLLVLGTTSFNDFLTHDCM 51

The following BLAST results are available for this feature:
BLAST of Csa1G555640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY87_CUCSA6.7e-21100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555640 PE=4 SV=1[more]
BLAST of Csa1G555640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210883|gb|KGN65979.1|9.6e-21100.00hypothetical protein Csa_1G555640 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G555640.1Csa1G555640.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G555640Cucumber (Gy14) v1cgycuB033
Csa1G555640Cucurbita maxima (Rimu)cmacuB053
Csa1G555640Cucurbita maxima (Rimu)cmacuB106
Csa1G555640Cucurbita moschata (Rifu)cmocuB042
Csa1G555640Cucurbita moschata (Rifu)cmocuB096
Csa1G555640Melon (DHL92) v3.5.1cumeB058
Csa1G555640Watermelon (Charleston Gray)cuwcgB040
Csa1G555640Watermelon (97103) v1cuwmB013
Csa1G555640Cucurbita pepo (Zucchini)cpecuB367
Csa1G555640Cucurbita pepo (Zucchini)cpecuB661
Csa1G555640Bottle gourd (USVL1VR-Ls)culsiB075
Csa1G555640Cucumber (Gy14) v2cgybcuB002
Csa1G555640Melon (DHL92) v3.6.1cumedB033
Csa1G555640Melon (DHL92) v3.6.1cumedB052
Csa1G555640Watermelon (97103) v2cuwmbB037
Csa1G555640Wax gourdcuwgoB085