Csa1G538150 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G538150
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 19688513 .. 19689842 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATTTCAGAAGGGGGCCTCATCATCGGCTTATATGAGAATTGTACAAATAGGAGATAAGACTGGCCACCCTGTCGTGCTCCATTGTTGCCCCTATTGAACTCACGTGTACTTGTTCGGTGAGAAATAGATCGGTGTAGGTTCTTGTCACACCACAAACCACACAGCGACCAAAACGTTGAAGTTGTGAGAATAGGATGTGAGTTAGTTACAACCTTGAAATTTTCTTATCGAAAATCTTATTCTCAACTCCTTTTAAATTATTAACAACACTCAAAATGCAGCCCTGGTCAATGTAACGCCAAGCAAAATAAGTACAAACCAAAACGTATACTTTATTAATAACATGCGTTTCACACATTATATTACAATACTTGGACTAAATAACCAATGTTTAACCATTTTCAAAACGTCTTTAATCACCTCGTTGGAAATCCTTCAACCTTCTTCTCTACTTGACCTAAACGTCTAATACTAGAATATAGATTTTTAAAACGTAAGTCTAAAAGACTTAGTGAGGGTTTATGAAAATCTTTCGCAATACCTTTTCATAATCGTTTCTCAAAAATAATATCAAATCATTTAAACATACCGACAAATCATTTCATTTCACATAAACCTTTATTTATGCTTAATAAATCATTTAATTTCACCAACGATCCTGAATCGCTATCTACGCTTGGTCTCATTACCTCGTGTTTATACTATTATAGCAACAACATCCGAGAACATACAGATTCATCCTTGTTGCTTAAACCACTAAGCTTTATACACTCCTTTCAACGAATAAGCTAACTTCCCAATGGTGGCTTAACTATTTATGTGCACGTAAAAGTTAGTATCATCTAAAAAAAAAAAAATATAGTATTGAAAGAAGATAGCCGGGAACAAGCAAGAAGAGTTCAGTCAATGTCTTGTCTGACGTAAAGCCAAAGACACCCAGGACTTTCACTCCCTTTTTCAGAACTCTCGCCGCGCCTTGGAAAAGCTGAAAAAGCATGGTGTACTCACGCCTCTTCGCCCATCTCCGCCACCAGATCCGATTCCCTCACTCAATCTGACTCTGGAAGTTATGCTGCCGAAGGAGAATACTGAGAAAAAGCAAATTCGGGGAAAGCTGACTCTTAGAGTTCCCTTTCTGCTTCTGAAAAAATTGGGAATTCCCTTGCTCCCTCAACTGGAAGAACCGACAGCTACTTCTTGTCGAGCTACTTTGTTCCGCTCTCAATTTGAACCTCAACTTCAGAGTAAAGCAGCCTCACTTCCGATCCGCGTAGTGGGCAGTCTCTCAGCTTCACTTCCTCATCCGTCTCTTCGGATAGGTTAG

mRNA sequence

ATGGGAATTTCAGAAGGGGGCCTCATCATCGGCTTATATGAGAATTCCAAAGACACCCAGGACTTTCACTCCCTTTTTCAGAACTCTCGCCGCGCCTTGGAAAAGCTGAAAAAGCATGGTGTACTCACGCCTCTTCGCCCATCTCCGCCACCAGATCCGATTCCCTCACTCAATCTGACTCTGGAAGTTATGCTGCCGAAGGAGAATACTGAGAAAAAGCAAATTCGGGGAAAGCTGACTCTTAGAGTTCCCTTTCTGCTTCTGAAAAAATTGGGAATTCCCTTGCTCCCTCAACTGGAAGAACCGACAGCTACTTCTTGTCGAGCTACTTTGTTCCGCTCTCAATTTGAACCTCAACTTCAGAGTAAAGCAGCCTCACTTCCGATCCGCGTAGTGGGCAGTCTCTCAGCTTCACTTCCTCATCCGTCTCTTCGGATAGGTTAG

Coding sequence (CDS)

ATGGGAATTTCAGAAGGGGGCCTCATCATCGGCTTATATGAGAATTCCAAAGACACCCAGGACTTTCACTCCCTTTTTCAGAACTCTCGCCGCGCCTTGGAAAAGCTGAAAAAGCATGGTGTACTCACGCCTCTTCGCCCATCTCCGCCACCAGATCCGATTCCCTCACTCAATCTGACTCTGGAAGTTATGCTGCCGAAGGAGAATACTGAGAAAAAGCAAATTCGGGGAAAGCTGACTCTTAGAGTTCCCTTTCTGCTTCTGAAAAAATTGGGAATTCCCTTGCTCCCTCAACTGGAAGAACCGACAGCTACTTCTTGTCGAGCTACTTTGTTCCGCTCTCAATTTGAACCTCAACTTCAGAGTAAAGCAGCCTCACTTCCGATCCGCGTAGTGGGCAGTCTCTCAGCTTCACTTCCTCATCCGTCTCTTCGGATAGGTTAG

Protein sequence

MGISEGGLIIGLYENSKDTQDFHSLFQNSRRALEKLKKHGVLTPLRPSPPPDPIPSLNLTLEVMLPKENTEKKQIRGKLTLRVPFLLLKKLGIPLLPQLEEPTATSCRATLFRSQFEPQLQSKAASLPIRVVGSLSASLPHPSLRIG*
Homology
[Close]
BLAST of Csa1G538150 vs. TrEMBL
Match: A0A0A0LYJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538150 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 7.1e-76
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MGISEGGLIIGLYENSKDTQDFHSLFQNSRRALEKLKKHGVLTPLRPSPPPDPIPSLNLT 60
           MGISEGGLIIGLYENSKDTQDFHSLFQNSRRALEKLKKHGVLTPLRPSPPPDPIPSLNLT
Sbjct: 1   MGISEGGLIIGLYENSKDTQDFHSLFQNSRRALEKLKKHGVLTPLRPSPPPDPIPSLNLT 60

Query: 61  LEVMLPKENTEKKQIRGKLTLRVPFLLLKKLGIPLLPQLEEPTATSCRATLFRSQFEPQL 120
           LEVMLPKENTEKKQIRGKLTLRVPFLLLKKLGIPLLPQLEEPTATSCRATLFRSQFEPQL
Sbjct: 61  LEVMLPKENTEKKQIRGKLTLRVPFLLLKKLGIPLLPQLEEPTATSCRATLFRSQFEPQL 120

Query: 121 QSKAASLPIRVVGSLSASLPHPSLRIG 148
           QSKAASLPIRVVGSLSASLPHPSLRIG
Sbjct: 121 QSKAASLPIRVVGSLSASLPHPSLRIG 147

[Close]
BLAST of Csa1G538150 vs. NCBI nr
Match: gi|700210821|gb|KGN65917.1| (hypothetical protein Csa_1G538150 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 1.0e-75
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 

Query: 1   MGISEGGLIIGLYENSKDTQDFHSLFQNSRRALEKLKKHGVLTPLRPSPPPDPIPSLNLT 60
           MGISEGGLIIGLYENSKDTQDFHSLFQNSRRALEKLKKHGVLTPLRPSPPPDPIPSLNLT
Sbjct: 1   MGISEGGLIIGLYENSKDTQDFHSLFQNSRRALEKLKKHGVLTPLRPSPPPDPIPSLNLT 60

Query: 61  LEVMLPKENTEKKQIRGKLTLRVPFLLLKKLGIPLLPQLEEPTATSCRATLFRSQFEPQL 120
           LEVMLPKENTEKKQIRGKLTLRVPFLLLKKLGIPLLPQLEEPTATSCRATLFRSQFEPQL
Sbjct: 61  LEVMLPKENTEKKQIRGKLTLRVPFLLLKKLGIPLLPQLEEPTATSCRATLFRSQFEPQL 120

Query: 121 QSKAASLPIRVVGSLSASLPHPSLRIG 148
           QSKAASLPIRVVGSLSASLPHPSLRIG
Sbjct: 121 QSKAASLPIRVVGSLSASLPHPSLRIG 147

The following BLAST results are available for this feature:
BLAST of Csa1G538150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYJ1_CUCSA7.1e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G538150 PE=4 SV=1[more]
BLAST of Csa1G538150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210821|gb|KGN65917.1|1.0e-75100.00hypothetical protein Csa_1G538150 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G538150.1Csa1G538150.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G538150Watermelon (97103) v2cuwmbB014
Csa1G538150Watermelon (97103) v2cuwmbB038
Csa1G538150Watermelon (97103) v2cuwmbB039
Csa1G538150Watermelon (97103) v2cuwmbB045
Csa1G538150Wax gourdcuwgoB039
Csa1G538150Wax gourdcuwgoB025
Csa1G538150Cucumber (Chinese Long) v2cucuB040
Csa1G538150Cucumber (Gy14) v1cgycuB018
Csa1G538150Cucumber (Gy14) v1cgycuB255
Csa1G538150Cucurbita maxima (Rimu)cmacuB208
Csa1G538150Cucurbita maxima (Rimu)cmacuB220
Csa1G538150Cucurbita maxima (Rimu)cmacuB392
Csa1G538150Cucurbita maxima (Rimu)cmacuB401
Csa1G538150Cucurbita moschata (Rifu)cmocuB193
Csa1G538150Cucurbita moschata (Rifu)cmocuB205
Csa1G538150Cucurbita moschata (Rifu)cmocuB381
Csa1G538150Cucurbita moschata (Rifu)cmocuB388
Csa1G538150Melon (DHL92) v3.5.1cumeB018
Csa1G538150Melon (DHL92) v3.5.1cumeB081
Csa1G538150Watermelon (Charleston Gray)cuwcgB027
Csa1G538150Watermelon (Charleston Gray)cuwcgB041
Csa1G538150Watermelon (Charleston Gray)cuwcgB042
Csa1G538150Watermelon (Charleston Gray)cuwcgB049
Csa1G538150Watermelon (97103) v1cuwmB014
Csa1G538150Watermelon (97103) v1cuwmB015
Csa1G538150Watermelon (97103) v1cuwmB025
Csa1G538150Watermelon (97103) v1cuwmB058
Csa1G538150Cucurbita pepo (Zucchini)cpecuB030
Csa1G538150Cucurbita pepo (Zucchini)cpecuB022
Csa1G538150Cucurbita pepo (Zucchini)cpecuB508
Csa1G538150Cucurbita pepo (Zucchini)cpecuB519
Csa1G538150Bottle gourd (USVL1VR-Ls)culsiB018
Csa1G538150Bottle gourd (USVL1VR-Ls)culsiB023
Csa1G538150Bottle gourd (USVL1VR-Ls)culsiB034
Csa1G538150Cucumber (Gy14) v2cgybcuB002
Csa1G538150Cucumber (Gy14) v2cgybcuB245
Csa1G538150Melon (DHL92) v3.6.1cumedB013
Csa1G538150Melon (DHL92) v3.6.1cumedB076
Csa1G538150Silver-seed gourdcarcuB0428
Csa1G538150Silver-seed gourdcarcuB0453
Csa1G538150Silver-seed gourdcarcuB0455