Csa1G537390 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G537390
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 19379351 .. 19380088 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTTCTAGCAAGTATTGATAACTTAACGACAAGTTTTGCTTTGAAAAGAAAATTTTATCTACCCTTATATCATCATCAGTAAACAATCGTGAGGGATTGTGGTGACGTCGTCATATGATGACCCATCCAACGATGGTGGTGTATGCACAAATGAAACGGGTGGAGTTTCAACAAGTGGATATGCTTATTACCGACCATATTCATTTCGATCACATCGTGAGTCAAACGTCTCGTGTGCATTGTGACCACTCCAAGATGCATATATTAGTATCGTCACCCAAATCACACAACGCATTCCCATCATACAATGGAGACATAAACGAGATACCATGTGATCAAGATGAAATGGTTGGATCGTTCGCATGAAGGGAATACGTGGGTCTTTGATCGTTCGCATAATGGGTTAGTGAGATTTTTTATTTTATTTTTTTATATTAGGTTATTTTATGAAATTTTCCAACTTAGAGAGAAGAAAAACATGAAGGTGCTATTGTGAGTGTTGCTGATTGGTGTAGGGTCTTCAAATGGTAGTCGACTATGACATCGCCTTGGGTGTCGCAGAGAAGGTGGTTTTTGAGTGAGGGCTTCCTTTTTTACGTGGGTCTTTTCGAGTTGGCAGATGCTTGGATCTTTTCTGAATGGAGGTGGGTTTCATTTCTAGAAGCATTAGCCGACATGTAGGTCTCTCAGTTTATTGTGTGTTTTGTCGACTGTATATTCGAGTTTGAAGAAGTTTAC

mRNA sequence

ATGATGACCCATCCAACGATGGTGGTGTATGCACAAATGAAACGGGTGGAGTTTCAACAAGTGGATATGCTTATTACCGACCATATTCATTTCGATCACATCGTGAGTCAAACGTCTCGTGTGCATTGTGACCACTCCAAGATGCATATATTAGTATCGTCACCCAAATCACACAACGCATTCCCATCATACAATGGAGACATAAACGAGATACCATGTGATCAAGATGAAATGGTTGGATCGTTCGCATGA

Coding sequence (CDS)

ATGATGACCCATCCAACGATGGTGGTGTATGCACAAATGAAACGGGTGGAGTTTCAACAAGTGGATATGCTTATTACCGACCATATTCATTTCGATCACATCGTGAGTCAAACGTCTCGTGTGCATTGTGACCACTCCAAGATGCATATATTAGTATCGTCACCCAAATCACACAACGCATTCCCATCATACAATGGAGACATAAACGAGATACCATGTGATCAAGATGAAATGGTTGGATCGTTCGCATGA

Protein sequence

MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNAFPSYNGDINEIPCDQDEMVGSFA*
Homology
[Close]
BLAST of Csa1G537390 vs. TrEMBL
Match: A0A0A0LXW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537390 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.5e-42
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA 60
          MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA
Sbjct: 1  MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA 60

Query: 61 FPSYNGDINEIPCDQDEMVGSFA 84
          FPSYNGDINEIPCDQDEMVGSFA
Sbjct: 61 FPSYNGDINEIPCDQDEMVGSFA 83

[Close]
BLAST of Csa1G537390 vs. NCBI nr
Match: gi|700210793|gb|KGN65889.1| (hypothetical protein Csa_1G537390 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-41
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1 

Query: 1  MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA 60
          MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA
Sbjct: 1  MMTHPTMVVYAQMKRVEFQQVDMLITDHIHFDHIVSQTSRVHCDHSKMHILVSSPKSHNA 60

Query: 61 FPSYNGDINEIPCDQDEMVGSFA 84
          FPSYNGDINEIPCDQDEMVGSFA
Sbjct: 61 FPSYNGDINEIPCDQDEMVGSFA 83

The following BLAST results are available for this feature:
BLAST of Csa1G537390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXW7_CUCSA8.5e-42100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G537390 PE=4 SV=1[more]
BLAST of Csa1G537390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210793|gb|KGN65889.1|1.2e-41100.00hypothetical protein Csa_1G537390 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G537390.1Csa1G537390.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G537390Bottle gourd (USVL1VR-Ls)culsiB023
Csa1G537390Cucumber (Gy14) v2cgybcuB002
Csa1G537390Melon (DHL92) v3.6.1cumedB025
Csa1G537390Silver-seed gourdcarcuB0231
Csa1G537390Silver-seed gourdcarcuB0453
Csa1G537390Watermelon (97103) v2cuwmbB045
Csa1G537390Wax gourdcuwgoB046
Csa1G537390Cucumber (Gy14) v1cgycuB255
Csa1G537390Cucurbita maxima (Rimu)cmacuB220
Csa1G537390Cucurbita maxima (Rimu)cmacuB392
Csa1G537390Cucurbita moschata (Rifu)cmocuB205
Csa1G537390Cucurbita moschata (Rifu)cmocuB381
Csa1G537390Melon (DHL92) v3.5.1cumeB032
Csa1G537390Watermelon (Charleston Gray)cuwcgB049
Csa1G537390Watermelon (97103) v1cuwmB025
Csa1G537390Cucurbita pepo (Zucchini)cpecuB030
Csa1G537390Cucurbita pepo (Zucchini)cpecuB508