Csa1G532260 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G532260
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 18765620 .. 18765929 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATTCCAAAGCTCGTCTCAGTCTCGCCCTCTTCCTCTTGCTCTCGTTTGCCCTCGTTGCCTCGGCTCGGATCATACCCCATTCAGGTACGTAAGATTGCCAATTAACCTATATTATTCAATAGTCTAGATTTGATGTATAAAAAACTAAAGTCTAATATTATATCAGAAAACCAAGAAGCAGCTTATGTGATAAATGATTATCCTGATCCGGGAGCTAATCCAAGACATCGTCCACCACCCCCATCACGACATTCGTCCGAAGTTAGCGTTGTCAAGAGTCGCCTCATCAAGAACAAGCCCTAA

mRNA sequence

ATGGATTATTCCAAAGCTCGTCTCAGTCTCGCCCTCTTCCTCTTGCTCTCGTTTGCCCTCGTTGCCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAGCTTATGTGATAAATGATTATCCTGATCCGGGAGCTAATCCAAGACATCGTCCACCACCCCCATCACGACATTCGTCCGAAGTTAGCGTTGTCAAGAGTCGCCTCATCAAGAACAAGCCCTAA

Coding sequence (CDS)

ATGGATTATTCCAAAGCTCGTCTCAGTCTCGCCCTCTTCCTCTTGCTCTCGTTTGCCCTCGTTGCCTCGGCTCGGATCATACCCCATTCAGAAAACCAAGAAGCAGCTTATGTGATAAATGATTATCCTGATCCGGGAGCTAATCCAAGACATCGTCCACCACCCCCATCACGACATTCGTCCGAAGTTAGCGTTGTCAAGAGTCGCCTCATCAAGAACAAGCCCTAA

Protein sequence

MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHSSEVSVVKSRLIKNKP*
Homology
[Close]
BLAST of Csa1G532260 vs. TrEMBL
Match: A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 2.7e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 SEVSVVKSRLIKNKP 76
          SEVSVVKSRLIKNKP
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]
BLAST of Csa1G532260 vs. TrEMBL
Match: A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-21
Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60
          MDYSKARLSL   LLLSF LV SARIIPHSENQE AY+INDYPDPGANPRH P PPP RH
Sbjct: 1  MDYSKARLSL--LLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRH 60

Query: 61 SSEVSVVKSRLIKNKP 76
            E+SVVK   I   P
Sbjct: 61 LFEISVVKDGDITKNP 74

[Close]
BLAST of Csa1G532260 vs. TrEMBL
Match: A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60
          MDYSKARL  ALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKARL--ALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60

Query: 61 SSEVSVVKSRLIKNKP 76
          S EV+ V+ R I   P
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]
BLAST of Csa1G532260 vs. TrEMBL
Match: A0A0A0LY98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSKA L  ALFLL+SF LV SARIIPHSENQEAAY+I DYP+    PRH PPPPS  S
Sbjct: 1  MDYSKAHL--ALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHPPPPSPPS 60

Query: 61 SEVSVVKSRLIKNKP 76
           EV+VVK R IK  P
Sbjct: 61 FEVNVVKDRHIKKNP 69

[Close]
BLAST of Csa1G532260 vs. TAIR10
Match: AT2G29995.1 (AT2G29995.1 unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.7e-06
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = 1 

Query: 4  SKARLSLALFLLLSFALVASARI-IPHSENQ-----EAAYVI--NDYPDPGANPRHRPPP 59
          S +R+ L LFL  +FAL++SARI +  SEN+     E + ++  NDY DP AN RH PP 
Sbjct: 5  SSSRIGLCLFLFFTFALLSSARISLSFSENEMTVVPERSLMVSTNDYSDPTANGRHDPPR 64

[Close]
BLAST of Csa1G532260 vs. NCBI nr
Match: gi|778661735|ref|XP_011658636.1| (PREDICTED: protein PSY3 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 3.8e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 SEVSVVKSRLIKNKP 76
          SEVSVVKSRLIKNKP
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]
BLAST of Csa1G532260 vs. NCBI nr
Match: gi|700210719|gb|KGN65815.1| (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 4.8e-21
Identity = 57/76 (75.00%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60
          MDYSKARLSL   LLLSF LV SARIIPHSENQE AY+INDYPDPGANPRH P PPP RH
Sbjct: 1  MDYSKARLSL--LLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRH 60

Query: 61 SSEVSVVKSRLIKNKP 76
            E+SVVK   I   P
Sbjct: 61 LFEISVVKDGDITKNP 74

[Close]
BLAST of Csa1G532260 vs. NCBI nr
Match: gi|700210720|gb|KGN65816.1| (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-20
Identity = 55/76 (72.37%), Postives = 59/76 (77.63%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRP-PPPSRH 60
          MDYSKARL  ALFLLLSFAL  SARIIPHSENQEA Y++NDY DPGANPRH P PPP  H
Sbjct: 1  MDYSKARL--ALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEH 60

Query: 61 SSEVSVVKSRLIKNKP 76
          S EV+ V+ R I   P
Sbjct: 61 SFEVNAVRGRHITKNP 74

[Close]
BLAST of Csa1G532260 vs. NCBI nr
Match: gi|700210721|gb|KGN65817.1| (hypothetical protein Csa_1G532250 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-17
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSKA L  ALFLL+SF LV SARIIPHSENQEAAY+I DYP+    PRH PPPPS  S
Sbjct: 1  MDYSKAHL--ALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHPPPPSPPS 60

Query: 61 SEVSVVKSRLIKNKP 76
           EV+VVK R IK  P
Sbjct: 61 FEVNVVKDRHIKKNP 69

[Close]
BLAST of Csa1G532260 vs. NCBI nr
Match: gi|659115448|ref|XP_008457562.1| (PREDICTED: uncharacterized protein LOC103497227 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 1 

Query: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60
          MDYSK RL  AL LLLSFA+   + II  SENQE AY INDYPDPGANPRH P PP    
Sbjct: 1  MDYSKTRL--ALLLLLSFAIKLKSNII--SENQEVAYTINDYPDPGANPRHDPFPPPPQQ 60

Query: 61 SEVSVVKSRLIKNKP 76
           EVSVVK + I+  P
Sbjct: 61 FEVSVVKVQHIRKNP 71

The following BLAST results are available for this feature:
BLAST of Csa1G532260 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVJ6_CUCSA2.7e-34100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532260 PE=4 SV=1[more]
A0A0A0LV67_CUCSA3.4e-2175.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532230 PE=4 SV=1[more]
A0A0A0M0T8_CUCSA1.7e-2072.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532240 PE=4 SV=1[more]
A0A0A0LY98_CUCSA1.3e-1770.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532250 PE=4 SV=1[more]
BLAST of Csa1G532260 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G29995.14.7e-0646.03 unknown protein[more]
BLAST of Csa1G532260 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778661735|ref|XP_011658636.1|3.8e-34100.00PREDICTED: protein PSY3 [Cucumis sativus][more]
gi|700210719|gb|KGN65815.1|4.8e-2175.00hypothetical protein Csa_1G532230 [Cucumis sativus][more]
gi|700210720|gb|KGN65816.1|2.4e-2072.37hypothetical protein Csa_1G532240 [Cucumis sativus][more]
gi|700210721|gb|KGN65817.1|1.9e-1770.67hypothetical protein Csa_1G532250 [Cucumis sativus][more]
gi|659115448|ref|XP_008457562.1|2.6e-1464.00PREDICTED: uncharacterized protein LOC103497227 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G532260.1Csa1G532260.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G532260CSPI01G23980Wild cucumber (PI 183967)cpicuB001
Csa1G532260CsGy1G023470Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G532260Watermelon (97103) v1cuwmB004
Csa1G532260Watermelon (97103) v1cuwmB021
Csa1G532260Cucurbita pepo (Zucchini)cpecuB382
Csa1G532260Cucurbita pepo (Zucchini)cpecuB507
Csa1G532260Cucurbita pepo (Zucchini)cpecuB529
Csa1G532260Bottle gourd (USVL1VR-Ls)culsiB030
Csa1G532260Melon (DHL92) v3.6.1cumedB023
Csa1G532260Melon (DHL92) v3.6.1cumedB058
Csa1G532260Silver-seed gourdcarcuB0171
Csa1G532260Silver-seed gourdcarcuB0412
Csa1G532260Silver-seed gourdcarcuB0550
Csa1G532260Silver-seed gourdcarcuB0680
Csa1G532260Silver-seed gourdcarcuB1010
Csa1G532260Watermelon (97103) v2cuwmbB015
Csa1G532260Watermelon (97103) v2cuwmbB043
Csa1G532260Wax gourdcuwgoB048
Csa1G532260Cucumber (Chinese Long) v2cucuB020
Csa1G532260Cucumber (Gy14) v1cgycuB267
Csa1G532260Cucurbita maxima (Rimu)cmacuB219
Csa1G532260Cucurbita maxima (Rimu)cmacuB234
Csa1G532260Cucurbita maxima (Rimu)cmacuB427
Csa1G532260Cucurbita maxima (Rimu)cmacuB688
Csa1G532260Cucurbita maxima (Rimu)cmacuB689
Csa1G532260Cucurbita moschata (Rifu)cmocuB204
Csa1G532260Cucurbita moschata (Rifu)cmocuB220
Csa1G532260Cucurbita moschata (Rifu)cmocuB416
Csa1G532260Cucurbita moschata (Rifu)cmocuB677
Csa1G532260Cucurbita moschata (Rifu)cmocuB678
Csa1G532260Melon (DHL92) v3.5.1cumeB028
Csa1G532260Melon (DHL92) v3.5.1cumeB064
Csa1G532260Watermelon (Charleston Gray)cuwcgB004
Csa1G532260Watermelon (Charleston Gray)cuwcgB047