Csa1G532250 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G532250
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 18762358 .. 18762657 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGGTACGCAAAATTTGTTAAATTATAAATCTATTGTTGAATAGTCTAGATTTGCATAATTGTATAGAAAACTAAAATGTAATATCATATCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAA

mRNA sequence

ATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAA

Coding sequence (CDS)

ATGGATTATTCTAAAGCTCATCTCGCCCTCTTCCTTTTGGTCTCGTTTGTCCTTGTTACCTCGGCTCGAATCATACCCCATTCAGAAAATCAAGAAGCTGCATATATGATAATTGACTATCCTGAGCCAAGACATCATCCACCACCTCCATCACCACCTTCGTTCGAGGTTAACGTTGTCAAGGACCGCCACATCAAGAAAAATCCCTAA

Protein sequence

MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVVKDRHIKKNP*
Homology
[Close]
BLAST of Csa1G532250 vs. TrEMBL
Match: A0A0A0LY98_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532250 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.3e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV 60
          MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV 60

Query: 61 KDRHIKKNP 70
          KDRHIKKNP
Sbjct: 61 KDRHIKKNP 69

[Close]
BLAST of Csa1G532250 vs. TrEMBL
Match: A0A0A0LV67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-18
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHP-PPPSPPSF 60
          MDYSKA L+L LL+SFVLVTSARIIPHSENQE AYMI DYP+    PRH+P PPP    F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNVVKDRHIKKNP 70
          E++VVKD  I KNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]
BLAST of Csa1G532250 vs. TrEMBL
Match: A0A0A0M0T8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.1e-18
Identity = 51/74 (68.92%), Postives = 56/74 (75.68%), Query Frame = 1 

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHP-PPPSPPSF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +    PRH P PPP   SF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNVVKDRHIKKNP 70
          EVN V+ RHI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]
BLAST of Csa1G532250 vs. TrEMBL
Match: A0A0A0LVJ6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532260 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-17
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 1  MDYSKAHL--ALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHPPPPSPPS 60
          MDYSKA L  ALFLL+SF LV SARIIPHSENQEAAY+I DYP+    PRH PPPPS  S
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 FEVNVVKDRHIKKNP 70
           EV+VVK R IK  P
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]
BLAST of Csa1G532250 vs. NCBI nr
Match: gi|700210721|gb|KGN65817.1| (hypothetical protein Csa_1G532250 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.9e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV 60
          MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV
Sbjct: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEPRHHPPPPSPPSFEVNVV 60

Query: 61 KDRHIKKNP 70
          KDRHIKKNP
Sbjct: 61 KDRHIKKNP 69

[Close]
BLAST of Csa1G532250 vs. NCBI nr
Match: gi|700210719|gb|KGN65815.1| (hypothetical protein Csa_1G532230 [Cucumis sativus])

HSP 1 Score: 98.2 bits (243), Expect = 6.0e-18
Identity = 52/74 (70.27%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHP-PPPSPPSF 60
          MDYSKA L+L LL+SFVLVTSARIIPHSENQE AYMI DYP+    PRH+P PPP    F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVNVVKDRHIKKNP 70
          E++VVKD  I KNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]
BLAST of Csa1G532250 vs. NCBI nr
Match: gi|700210720|gb|KGN65816.1| (hypothetical protein Csa_1G532240 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-17
Identity = 51/74 (68.92%), Postives = 56/74 (75.68%), Query Frame = 1 

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHP-PPPSPPSF 60
          MDYSKA LALFLL+SF L TSARIIPHSENQEA Y++ DY +    PRH P PPP   SF
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVNVVKDRHIKKNP 70
          EVN V+ RHI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]
BLAST of Csa1G532250 vs. NCBI nr
Match: gi|778661735|ref|XP_011658636.1| (PREDICTED: protein PSY3 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-17
Identity = 53/75 (70.67%), Postives = 57/75 (76.00%), Query Frame = 1 

Query: 1  MDYSKAHL--ALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPE----PRHHPPPPSPPS 60
          MDYSKA L  ALFLL+SF LV SARIIPHSENQEAAY+I DYP+    PRH PPPPS  S
Sbjct: 1  MDYSKARLSLALFLLLSFALVASARIIPHSENQEAAYVINDYPDPGANPRHRPPPPSRHS 60

Query: 61 FEVNVVKDRHIKKNP 70
           EV+VVK R IK  P
Sbjct: 61 SEVSVVKSRLIKNKP 75

[Close]
BLAST of Csa1G532250 vs. NCBI nr
Match: gi|659115448|ref|XP_008457562.1| (PREDICTED: uncharacterized protein LOC103497227 [Cucumis melo])

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1 

Query: 1  MDYSKAHLALFLLVSFVLVTSARIIPHSENQEAAYMIIDYPEP----RHHPPPPSPPSFE 60
          MDYSK  LAL LL+SF +   + II  SENQE AY I DYP+P    RH P PP P  FE
Sbjct: 1  MDYSKTRLALLLLLSFAIKLKSNII--SENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60

Query: 61 VNVVKDRHIKKNP 70
          V+VVK +HI+KNP
Sbjct: 61 VSVVKVQHIRKNP 71

The following BLAST results are available for this feature:
BLAST of Csa1G532250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY98_CUCSA1.3e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532250 PE=4 SV=1[more]
A0A0A0LV67_CUCSA4.2e-1870.27Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532230 PE=4 SV=1[more]
A0A0A0M0T8_CUCSA7.1e-1868.92Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532240 PE=4 SV=1[more]
A0A0A0LVJ6_CUCSA1.2e-1770.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532260 PE=4 SV=1[more]
BLAST of Csa1G532250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210721|gb|KGN65817.1|1.9e-32100.00hypothetical protein Csa_1G532250 [Cucumis sativus][more]
gi|700210719|gb|KGN65815.1|6.0e-1870.27hypothetical protein Csa_1G532230 [Cucumis sativus][more]
gi|700210720|gb|KGN65816.1|1.0e-1768.92hypothetical protein Csa_1G532240 [Cucumis sativus][more]
gi|778661735|ref|XP_011658636.1|1.7e-1770.67PREDICTED: protein PSY3 [Cucumis sativus][more]
gi|659115448|ref|XP_008457562.1|1.7e-1258.90PREDICTED: uncharacterized protein LOC103497227 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G532250.1Csa1G532250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G532250Watermelon (97103) v2cuwmbB015
Csa1G532250Watermelon (97103) v2cuwmbB043
Csa1G532250Wax gourdcuwgoB048
Csa1G532250Cucumber (Chinese Long) v2cucuB020
Csa1G532250Cucumber (Gy14) v1cgycuB267
Csa1G532250Cucurbita maxima (Rimu)cmacuB219
Csa1G532250Cucurbita maxima (Rimu)cmacuB234
Csa1G532250Cucurbita maxima (Rimu)cmacuB427
Csa1G532250Cucurbita maxima (Rimu)cmacuB688
Csa1G532250Cucurbita maxima (Rimu)cmacuB689
Csa1G532250Cucurbita moschata (Rifu)cmocuB204
Csa1G532250Cucurbita moschata (Rifu)cmocuB220
Csa1G532250Cucurbita moschata (Rifu)cmocuB416
Csa1G532250Cucurbita moschata (Rifu)cmocuB677
Csa1G532250Cucurbita moschata (Rifu)cmocuB678
Csa1G532250Melon (DHL92) v3.5.1cumeB028
Csa1G532250Melon (DHL92) v3.5.1cumeB064
Csa1G532250Watermelon (Charleston Gray)cuwcgB004
Csa1G532250Watermelon (Charleston Gray)cuwcgB047
Csa1G532250Watermelon (97103) v1cuwmB004
Csa1G532250Watermelon (97103) v1cuwmB021
Csa1G532250Cucurbita pepo (Zucchini)cpecuB382
Csa1G532250Cucurbita pepo (Zucchini)cpecuB507
Csa1G532250Cucurbita pepo (Zucchini)cpecuB529
Csa1G532250Bottle gourd (USVL1VR-Ls)culsiB030
Csa1G532250Cucumber (Gy14) v2cgybcuB002
Csa1G532250Melon (DHL92) v3.6.1cumedB023
Csa1G532250Melon (DHL92) v3.6.1cumedB058
Csa1G532250Silver-seed gourdcarcuB0171
Csa1G532250Silver-seed gourdcarcuB0412
Csa1G532250Silver-seed gourdcarcuB0550
Csa1G532250Silver-seed gourdcarcuB0680
Csa1G532250Silver-seed gourdcarcuB1010