Csa1G532220 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G532220
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 18745135 .. 18748365 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATTAAGGGCAGGTCGTTTATGTTTGTTGTTGATGTTCATGGTAATGATAGTACTGTATTTGCCAATTTCAGGTATGACCTAATTCTTCTTACGTGTTAGCAGTTTTTGAGCATGCATGCATCCTTTTCTTTAAAGTTACAGGCTTTTAAGTCTCTCGTCTTGACTACAACATTTGTTGAACTAAGAAAAATAAAAATGTATGACTAGGGTTTGTTATTTGTTGTTTTAGTAAAGTTTGAAACTAGATTTTTTGAATCAAATCTATCATCTCATTGTTTGAGTTGCAATGGGAACCTTTTGTTCTCTATACCTTATCAATTCTAGTATACATGAGTAGTTGTATTACGAAATCACCACAATTAATTTGGATGTATATGAGAGAAAAAAACTTGAATTTATATCTAATGATTATTATGGGATGGGTAGACTTTCGAATCTACATCCAACAATTACTAAATGGACTTTCCGTCGTATAGATATACATACATATACATATACCTATCATTTTTCAAGGGGGATTGGTTTGATGTCAAAATGAGCATATAATTCTAACCAATCATAATGTTAGGTTTAATTTAGTTTCATCTATTTAATTTCTTACATCTAATACAATAATTTAGATACCAAAGCGAAGTTTATTTATAAAATTAAAAGATAAAAAAGTGAAGATTATGTTTGGGTTTGTTTCATTTTGAAAGATGAACTTTTAATAGTTCAAAATCAATTTTATCGGACGATTAAAAATATAAATCAAACAAATAATTGTAGGTTTGTACATATAATAAAAAATTATTTTAAATTATTTCAAAATAACTTTAAACATGGTATAACTTAATTTAAATAATTTTAAACATAGTATAACTAAATTGAGTATTTGAATTATCAAATTACTTGGAAGAACTCTTATTGATGAGTATGATAAACTCTAAACTAAATGCAATTACCCCATCTTATATAGGTAGCCAAATTCATATTTATGTGATCTCTTAGTGATCAATAATAAACCGTGATATATAATATAAATATGTTATACTATGCTTTAGTTAGCTTATTTAATATAATTCGTATGCGTGTGATATTTGTTATGAATACGAGCATAATTAAGATATCCATTCAACAACCATATGATATTAAATAAGAGATATGATGGTTGCCTTCAACTTTTATTTGTATAATTTATACTAAAAATTTAATATTGATTTTTAAAAACCTTCATTAAAGACAACTGACAGAGATCTGAATGAATATTATGTCTCCAATAGTGTTCAAATATGCTCAAACCAAAACTATTTATTTAATTTAGTGTGATTGTACATGCACTTCTATTTTTTACATTATTTTTCATTCATGAACCTGAATAGTGCATGTGATATTTTTACTGCTTATGATTCAACAAAAAGTAATTTTGTAATCTCTAGATAAACAATTAATTTGCTTTGAACTAAATTGGTGTAAAGTGATTCATTGATTAAAAAAATATATATAGAGAGAGAGAGAAAATTAAAATGAAACCTCAAGCTAAGAAAACACACACACAGAGAGTAATATCTTATGGATCCCTTGATAATGGGTTATGGCTCTATATGATGCAAAGCCCAAACCATCTCCTAAATTCCCCAATGCCCAAATAATTTGGTTGTTCACATTGAAGCTATAAAATAAATATTTTGGTAGATTCACCAATCTGTTTTTAGTTCAACCATGTAGCTTAATTAGAGGTAGAGAATGAAAATTTCGAAAGTATTATTTATCGTAAATAATGAGTGTAAATGTAGGTCGGTAAAATTAGAGTTAAAAATGAGAATGGGTGATCTAAATTAATATTATCTATTACAAGTAGAATAATATGAGGGTACTTTGAAAATGTGTAAAAAGTGAGATCCATGAATTCTGGAAAAGGAATGATTTTTCTCATCTTTTTCAATAGGGTATTGTCCTTTCCAATGTTACCCTTTCTAATATAAAATATATAAAACAAAGTTCCAAATGGAGAAAATATGGATGTGAAAAAATTGAGAAATGAATCAATTTCAGAAAAAGTTAATATTAAAAAAGTAGATTTCGAATGTATTCAAAATATATTGAGTAAATTTAAACAGACTTTATTGGCATTAATTATGTAATTAGAGGGTCAAGTTGTTAGAAAATTGAAAATAATATGTATTAAAATTGGTAGGACATCAACATCCATAATAATAATAATAATAATAATGGTTTTATTTTTGGTTTAAAATAAGATAAAATATAATATTAAAAGAGGGAAAGAAAGAAAGAGAAGAGGAAACAATTTGTCATGTTTTACATACGAAGTTGGGTTTCTCTTTTTGTTAAATAATTATTATAAGAACAAATACTTTTAATTTGGAAGATCACGTGACCGTATCTCGAAGAAAGCATCCCCACGTGACCAACAATTCATAACTCTTTAACTTTCTGATAATTAATAATTTGGACCAAGTGGCCTTTTCTTTTCTTTTCTTTTCTTTGCAATCAGCCATCGCCACTTTACCCTCTCAATAAAAAGATTCTTTCTCATTCTATTATTTTTTTTTTCTTTATAATATCAATTTAAATCTTCTTTTATTTTCTACACTTTAACTAAAATTAATACTCTTACTTAATTTTTTTTTAATTAAATGGTAAAACGAAAATATTGGGTTAAAAAAATATTAGGATTTTATTAATGTGACATTAATTTAATTCAATATGTTTTTTCCCCATATTTTAAAGAACATATAATATATATTTTTTAGTTTAGTTTTAAAAACTACCTAACTTTAAAATAGCACATAATTGACTATGTCAATAATGTTGCAATTCTTTTTTATTCCACGTGATTGATAACCCTTCTTGATTCATTTTCTTTCCATATATAATATATGTATGTGTAATGTATAAGAAATATAAAATTTAAAAATAATCGCATCAAATAATAAAAAAAAGTTACAAAAAGACACTTCATAGCACATATTTTTTTGCCCATCATAATAGGCAATTTAAAGAAAACGAACGATAGTAAAAAGTGAAATTATTATGAATTTGTTTTTGAACAGGGAAAGGTGATGGGGAAATGAAAACAATAATGAGAGGCAAAAGGTGTTTGACAGTGAAGATAAATGATTATGATGATCCATCTCCAAATGAAGGCCACAATCCATTTAAGTCTAAACCAAAAAAGCCACTTAAGGGTAATAGAAAAGGGAAGCCTAACAAAATTCATAGTTAA

mRNA sequence

ATGGGATTAAGGGCAGGTCGTTTATGTTTGTTGTTGATGTTCATGGTAATGATAGTACTGTATTTGCCAATTTCAGGGAAAGGTGATGGGGAAATGAAAACAATAATGAGAGGCAAAAGGTGTTTGACAGTGAAGATAAATGATTATGATGATCCATCTCCAAATGAAGGCCACAATCCATTTAAGTCTAAACCAAAAAAGCCACTTAAGGGTAATAGAAAAGGGAAGCCTAACAAAATTCATAGTTAA

Coding sequence (CDS)

ATGGGATTAAGGGCAGGTCGTTTATGTTTGTTGTTGATGTTCATGGTAATGATAGTACTGTATTTGCCAATTTCAGGGAAAGGTGATGGGGAAATGAAAACAATAATGAGAGGCAAAAGGTGTTTGACAGTGAAGATAAATGATTATGATGATCCATCTCCAAATGAAGGCCACAATCCATTTAAGTCTAAACCAAAAAAGCCACTTAAGGGTAATAGAAAAGGGAAGCCTAACAAAATTCATAGTTAA

Protein sequence

MGLRAGRLCLLLMFMVMIVLYLPISGKGDGEMKTIMRGKRCLTVKINDYDDPSPNEGHNPFKSKPKKPLKGNRKGKPNKIHS*
Homology
[Close]
BLAST of Csa1G532220 vs. TrEMBL
Match: A0A0A0LXM5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532220 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.1e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MGLRAGRLCLLLMFMVMIVLYLPISGKGDGEMKTIMRGKRCLTVKINDYDDPSPNEGHNP 60
          MGLRAGRLCLLLMFMVMIVLYLPISGKGDGEMKTIMRGKRCLTVKINDYDDPSPNEGHNP
Sbjct: 1  MGLRAGRLCLLLMFMVMIVLYLPISGKGDGEMKTIMRGKRCLTVKINDYDDPSPNEGHNP 60

Query: 61 FKSKPKKPLKGNRKGKPNKIHS 83
          FKSKPKKPLKGNRKGKPNKIHS
Sbjct: 61 FKSKPKKPLKGNRKGKPNKIHS 82

[Close]
BLAST of Csa1G532220 vs. NCBI nr
Match: gi|700210718|gb|KGN65814.1| (hypothetical protein Csa_1G532220 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.0e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 

Query: 1  MGLRAGRLCLLLMFMVMIVLYLPISGKGDGEMKTIMRGKRCLTVKINDYDDPSPNEGHNP 60
          MGLRAGRLCLLLMFMVMIVLYLPISGKGDGEMKTIMRGKRCLTVKINDYDDPSPNEGHNP
Sbjct: 1  MGLRAGRLCLLLMFMVMIVLYLPISGKGDGEMKTIMRGKRCLTVKINDYDDPSPNEGHNP 60

Query: 61 FKSKPKKPLKGNRKGKPNKIHS 83
          FKSKPKKPLKGNRKGKPNKIHS
Sbjct: 61 FKSKPKKPLKGNRKGKPNKIHS 82

The following BLAST results are available for this feature:
BLAST of Csa1G532220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXM5_CUCSA7.1e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G532220 PE=4 SV=1[more]
BLAST of Csa1G532220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210718|gb|KGN65814.1|1.0e-40100.00hypothetical protein Csa_1G532220 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G532220.1Csa1G532220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G532220Cla97C03G051480Watermelon (97103) v2cuwmbB043
Csa1G532220CsGy1G023430Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G532220Bottle gourd (USVL1VR-Ls)culsiB030
Csa1G532220Melon (DHL92) v3.6.1cumedB023
Csa1G532220Melon (DHL92) v3.6.1cumedB058
Csa1G532220Silver-seed gourdcarcuB0171
Csa1G532220Silver-seed gourdcarcuB0412
Csa1G532220Silver-seed gourdcarcuB0550
Csa1G532220Silver-seed gourdcarcuB0680
Csa1G532220Silver-seed gourdcarcuB1010
Csa1G532220Watermelon (97103) v2cuwmbB015
Csa1G532220Wax gourdcuwgoB048
Csa1G532220Cucumber (Chinese Long) v2cucuB020
Csa1G532220Cucumber (Gy14) v1cgycuB267
Csa1G532220Cucurbita maxima (Rimu)cmacuB219
Csa1G532220Cucurbita maxima (Rimu)cmacuB234
Csa1G532220Cucurbita maxima (Rimu)cmacuB427
Csa1G532220Cucurbita maxima (Rimu)cmacuB688
Csa1G532220Cucurbita maxima (Rimu)cmacuB689
Csa1G532220Cucurbita moschata (Rifu)cmocuB204
Csa1G532220Cucurbita moschata (Rifu)cmocuB220
Csa1G532220Cucurbita moschata (Rifu)cmocuB416
Csa1G532220Cucurbita moschata (Rifu)cmocuB677
Csa1G532220Cucurbita moschata (Rifu)cmocuB678
Csa1G532220Melon (DHL92) v3.5.1cumeB028
Csa1G532220Melon (DHL92) v3.5.1cumeB064
Csa1G532220Watermelon (Charleston Gray)cuwcgB004
Csa1G532220Watermelon (Charleston Gray)cuwcgB047
Csa1G532220Watermelon (97103) v1cuwmB004
Csa1G532220Watermelon (97103) v1cuwmB021
Csa1G532220Cucurbita pepo (Zucchini)cpecuB382
Csa1G532220Cucurbita pepo (Zucchini)cpecuB507
Csa1G532220Cucurbita pepo (Zucchini)cpecuB529