Csa1G527900 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G527900
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 18416840 .. 18417141 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATGCCAAAGCAAATTTTCAAAAAACGAAGCTCTGGGTTTTGATGGGTTTGATGAATCTGATCAGTAGTTGATGGGAGAAGGCAAAACCCCGCTGCTAAATCTCTATGACGATATAATGGCGAGTATTTTACAAAATTGTTACTTCTTGATTTTAGGTTTGAAGGTATACTTCCAATGTCACCAAAACTCAGGAACCGGATTTGGGACGGTTCGGTTCAAATAGACCATCTCAGCTTGGTATCGGTTCAAACGGACCAGCGTGACCGAATTATCAAATCAAAAGGGCCCAAGCCTTAA

mRNA sequence

ATGAAATGCCAAAGCAAATTTTCAAAAAACGAAGCTCTGGGTTTTGATGGGTTTGATGAATCTGATCAGTTTGAAGGTATACTTCCAATGTCACCAAAACTCAGGAACCGGATTTGGGACGGTTCGGTTCAAATAGACCATCTCAGCTTGGTATCGGTTCAAACGGACCAGCGTGACCGAATTATCAAATCAAAAGGGCCCAAGCCTTAA

Coding sequence (CDS)

ATGAAATGCCAAAGCAAATTTTCAAAAAACGAAGCTCTGGGTTTTGATGGGTTTGATGAATCTGATCAGTTTGAAGGTATACTTCCAATGTCACCAAAACTCAGGAACCGGATTTGGGACGGTTCGGTTCAAATAGACCATCTCAGCTTGGTATCGGTTCAAACGGACCAGCGTGACCGAATTATCAAATCAAAAGGGCCCAAGCCTTAA

Protein sequence

MKCQSKFSKNEALGFDGFDESDQFEGILPMSPKLRNRIWDGSVQIDHLSLVSVQTDQRDRIIKSKGPKP*
Homology
[Close]
BLAST of Csa1G527900 vs. TrEMBL
Match: A0A0A0LXI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527900 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 6.7e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MKCQSKFSKNEALGFDGFDESDQFEGILPMSPKLRNRIWDGSVQIDHLSLVSVQTDQRDR 60
          MKCQSKFSKNEALGFDGFDESDQFEGILPMSPKLRNRIWDGSVQIDHLSLVSVQTDQRDR
Sbjct: 1  MKCQSKFSKNEALGFDGFDESDQFEGILPMSPKLRNRIWDGSVQIDHLSLVSVQTDQRDR 60

Query: 61 IIKSKGPKP 70
          IIKSKGPKP
Sbjct: 61 IIKSKGPKP 69

[Close]
BLAST of Csa1G527900 vs. NCBI nr
Match: gi|700210678|gb|KGN65774.1| (hypothetical protein Csa_1G527900 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 9.5e-32
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 

Query: 1  MKCQSKFSKNEALGFDGFDESDQFEGILPMSPKLRNRIWDGSVQIDHLSLVSVQTDQRDR 60
          MKCQSKFSKNEALGFDGFDESDQFEGILPMSPKLRNRIWDGSVQIDHLSLVSVQTDQRDR
Sbjct: 1  MKCQSKFSKNEALGFDGFDESDQFEGILPMSPKLRNRIWDGSVQIDHLSLVSVQTDQRDR 60

Query: 61 IIKSKGPKP 70
          IIKSKGPKP
Sbjct: 61 IIKSKGPKP 69

The following BLAST results are available for this feature:
BLAST of Csa1G527900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXI5_CUCSA6.7e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527900 PE=4 SV=1[more]
BLAST of Csa1G527900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210678|gb|KGN65774.1|9.5e-32100.00hypothetical protein Csa_1G527900 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045039 protein import into mitochondrial inner membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU106068cucumber EST collection version 3.0transcribed_cluster
CU163050cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G527900.1Csa1G527900.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU106068CU106068transcribed_cluster
CU163050CU163050transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G527900Watermelon (97103) v2cuwmbB015
Csa1G527900Watermelon (97103) v2cuwmbB043
Csa1G527900Wax gourdcuwgoB017
Csa1G527900Wax gourdcuwgoB045
Csa1G527900Wax gourdcuwgoB048
Csa1G527900Cucumber (Chinese Long) v2cucuB020
Csa1G527900Cucumber (Chinese Long) v2cucuB036
Csa1G527900Cucumber (Gy14) v1cgycuB189
Csa1G527900Cucumber (Gy14) v1cgycuB210
Csa1G527900Cucumber (Gy14) v1cgycuB267
Csa1G527900Cucurbita maxima (Rimu)cmacuB219
Csa1G527900Cucurbita maxima (Rimu)cmacuB234
Csa1G527900Cucurbita maxima (Rimu)cmacuB427
Csa1G527900Cucurbita maxima (Rimu)cmacuB812
Csa1G527900Cucurbita moschata (Rifu)cmocuB204
Csa1G527900Cucurbita moschata (Rifu)cmocuB220
Csa1G527900Cucurbita moschata (Rifu)cmocuB416
Csa1G527900Cucurbita moschata (Rifu)cmocuB804
Csa1G527900Melon (DHL92) v3.5.1cumeB028
Csa1G527900Melon (DHL92) v3.5.1cumeB063
Csa1G527900Melon (DHL92) v3.5.1cumeB064
Csa1G527900Watermelon (Charleston Gray)cuwcgB004
Csa1G527900Watermelon (Charleston Gray)cuwcgB047
Csa1G527900Watermelon (97103) v1cuwmB004
Csa1G527900Watermelon (97103) v1cuwmB021
Csa1G527900Watermelon (97103) v1cuwmB073
Csa1G527900Cucurbita pepo (Zucchini)cpecuB507
Csa1G527900Cucurbita pepo (Zucchini)cpecuB529
Csa1G527900Cucurbita pepo (Zucchini)cpecuB535
Csa1G527900Bottle gourd (USVL1VR-Ls)culsiB030
Csa1G527900Bottle gourd (USVL1VR-Ls)culsiB048
Csa1G527900Cucumber (Gy14) v2cgybcuB002
Csa1G527900Cucumber (Gy14) v2cgybcuB099
Csa1G527900Cucumber (Gy14) v2cgybcuB241
Csa1G527900Melon (DHL92) v3.6.1cumedB023
Csa1G527900Melon (DHL92) v3.6.1cumedB057
Csa1G527900Melon (DHL92) v3.6.1cumedB058
Csa1G527900Silver-seed gourdcarcuB0171
Csa1G527900Silver-seed gourdcarcuB0412
Csa1G527900Silver-seed gourdcarcuB0471
Csa1G527900Silver-seed gourdcarcuB1010