Csa1G527880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G527880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 18413398 .. 18413754 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAACTCGGTGTTTAGCCGGAAATCTCAACGGATTTCACATCTGTTTTCTTCCCATCCGCCTTCGGAACCATCACAGTAAGAACTCCGTTCTCCATCGATGCCCTAATTTTCTCCGGTTTCACATCCTCCGGCATTCTAAATCTCCTCTGAAACTTTCCACTGCTTCGTTCTATCCGATGCCATTTCTCGTTCTTATCCTCTTTCTCTACGTTCCTTTCGCCGCTAATCTGAATCACTCTTCCGTCTTCAATCTCCACTTTCACCTCCTCTTTCTTCAGTCCAGGCAGATCGGCTTTCAGAACATGAGCCTCCGGCGTCTCCTTCCAATCTACATGAGCGTTCACTATAGCTGA

mRNA sequence

ATGATAACTCGGTGTTTAGCCGGAAATCTCAACGGATTTCACATCTGTTTTCTTCCCATCCGCCTTCGGAACCATCACAGTAAGAACTCCGTTCTCCATCGATGCCCTAATTTTCTCCGGTTTCACATCCTCCGGCATTCTAAATCTCCTCTGAAACTTTCCACTGCTTCGTTCTATCCGATGCCATTTCTCGTTCTTATCCTCTTTCTCTACGTTCCTTTCGCCGCTAATCTGAATCACTCTTCCGTCTTCAATCTCCACTTTCACCTCCTCTTTCTTCAGTCCAGGCAGATCGGCTTTCAGAACATGAGCCTCCGGCGTCTCCTTCCAATCTACATGAGCGTTCACTATAGCTGA

Coding sequence (CDS)

ATGATAACTCGGTGTTTAGCCGGAAATCTCAACGGATTTCACATCTGTTTTCTTCCCATCCGCCTTCGGAACCATCACAGTAAGAACTCCGTTCTCCATCGATGCCCTAATTTTCTCCGGTTTCACATCCTCCGGCATTCTAAATCTCCTCTGAAACTTTCCACTGCTTCGTTCTATCCGATGCCATTTCTCGTTCTTATCCTCTTTCTCTACGTTCCTTTCGCCGCTAATCTGAATCACTCTTCCGTCTTCAATCTCCACTTTCACCTCCTCTTTCTTCAGTCCAGGCAGATCGGCTTTCAGAACATGAGCCTCCGGCGTCTCCTTCCAATCTACATGAGCGTTCACTATAGCTGA

Protein sequence

MITRCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPFLVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVHYS*
Homology
[Close]
BLAST of Csa1G527880 vs. TrEMBL
Match: A0A0A0LY58_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527880 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.2e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MITRCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYP 60
           MITRCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYP
Sbjct: 1   MITRCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYP 60

Query: 61  MPFLVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVHYS 119
           MPFLVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVHYS
Sbjct: 61  MPFLVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVHYS 118

[Close]
BLAST of Csa1G527880 vs. TrEMBL
Match: V4LLN1_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017313mg PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 1 

Query: 4   RCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPF 63
           R L G+LN F I FL +R R+ HS+NS+LHR  + +  HILR  K P KL T S + +P 
Sbjct: 8   RNLTGDLNRFDISFLRLRFRHSHSQNSILHRSFHLIHLHILRQPKPPRKLPTRSLHTVPR 67

Query: 64  LVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVH 117
           +VLIL L+V  + +L ++   +LH H L L+SRQ+  +++ LRRL P++  VH
Sbjct: 68  VVLILLLHVSLSTDLQNAVFLDLHLHFLLLKSRQVRLEHVRLRRLPPVHTCVH 120

[Close]
BLAST of Csa1G527880 vs. TrEMBL
Match: A0A059D751_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02741 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.1e-18
Identity = 46/110 (41.82%), Postives = 79/110 (71.82%), Query Frame = 1 

Query: 6   LAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPFLV 65
           LAG+L+GFH+  L  +L + + ++++LHRCP+ +   +L  ++ P +L+ AS  P+P L 
Sbjct: 30  LAGDLDGFHLRLLLRQLGDSYGQDAILHRCPHLIGLGVLWQAEPPEELAAASLDPVPCLA 89

Query: 66  LILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSV 116
           L+L L    +A+L +SS+F+LH HLL L++R++GF+++ LRRLLP+ + V
Sbjct: 90  LLLLLDASLSADLKNSSLFHLHLHLLLLEAREVGFEHVGLRRLLPVDLQV 139

[Close]
BLAST of Csa1G527880 vs. TrEMBL
Match: C6T167_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.0e-16
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1 

Query: 18  LPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPFLVLILFLYVPFAAN 77
           L + LRN +SKN + HR  +F+ F ILR S+ P +LSTA+ + MP +VLI  L VP +A+
Sbjct: 3   LNLFLRNSNSKNPIFHRSLHFIHFCILRQSEPPHELSTATLHAMPRVVLIFILNVPLSAD 62

Query: 78  LNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVH 117
           L H  +FNLH H L LQ   IG +++ L  LLPI+ S H
Sbjct: 63  LKHLIIFNLHLHFLLLQPGNIGLEHVRLWGLLPIHTSAH 101

[Close]
BLAST of Csa1G527880 vs. TrEMBL
Match: A0A0S3QZF3_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G120700 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-14
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1 

Query: 6   LAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPFLV 65
           L  NLNG     L I L N +SKN++LHR  +F+ F ILR S+ P +L TA+ + MP +V
Sbjct: 41  LTRNLNGLDFRLLNIFLGNSNSKNTILHRSLHFIHFCILRQSEPPQELPTATLHTMPRIV 100

Query: 66  LILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVH 117
           LI  L V   A L +  +F L+ H L LQS  +  +++ L RLLP++   H
Sbjct: 101 LIFLLNVSLTAYLKNLIIFYLNLHFLLLQSWNLSLEHVCLWRLLPVHTGTH 151

[Close]
BLAST of Csa1G527880 vs. NCBI nr
Match: gi|700210676|gb|KGN65772.1| (hypothetical protein Csa_1G527880 [Cucumis sativus])

HSP 1 Score: 246.9 bits (629), Expect = 1.8e-62
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

Query: 1   MITRCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYP 60
           MITRCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYP
Sbjct: 1   MITRCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYP 60

Query: 61  MPFLVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVHYS 119
           MPFLVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVHYS
Sbjct: 61  MPFLVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVHYS 118

[Close]
BLAST of Csa1G527880 vs. NCBI nr
Match: gi|567210129|ref|XP_006410007.1| (hypothetical protein EUTSA_v10017313mg [Eutrema salsugineum])

HSP 1 Score: 103.6 bits (257), Expect = 2.4e-19
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 1 

Query: 4   RCLAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPF 63
           R L G+LN F I FL +R R+ HS+NS+LHR  + +  HILR  K P KL T S + +P 
Sbjct: 8   RNLTGDLNRFDISFLRLRFRHSHSQNSILHRSFHLIHLHILRQPKPPRKLPTRSLHTVPR 67

Query: 64  LVLILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVH 117
           +VLIL L+V  + +L ++   +LH H L L+SRQ+  +++ LRRL P++  VH
Sbjct: 68  VVLILLLHVSLSTDLQNAVFLDLHLHFLLLKSRQVRLEHVRLRRLPPVHTCVH 120

[Close]
BLAST of Csa1G527880 vs. NCBI nr
Match: gi|629121545|gb|KCW86035.1| (hypothetical protein EUGRSUZ_B02741 [Eucalyptus grandis])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 46/110 (41.82%), Postives = 79/110 (71.82%), Query Frame = 1 

Query: 6   LAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPFLV 65
           LAG+L+GFH+  L  +L + + ++++LHRCP+ +   +L  ++ P +L+ AS  P+P L 
Sbjct: 30  LAGDLDGFHLRLLLRQLGDSYGQDAILHRCPHLIGLGVLWQAEPPEELAAASLDPVPCLA 89

Query: 66  LILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSV 116
           L+L L    +A+L +SS+F+LH HLL L++R++GF+++ LRRLLP+ + V
Sbjct: 90  LLLLLDASLSADLKNSSLFHLHLHLLLLEAREVGFEHVGLRRLLPVDLQV 139

[Close]
BLAST of Csa1G527880 vs. NCBI nr
Match: gi|351724093|ref|NP_001235510.1| (uncharacterized protein LOC100500262 [Glycine max])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-16
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1 

Query: 18  LPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPFLVLILFLYVPFAAN 77
           L + LRN +SKN + HR  +F+ F ILR S+ P +LSTA+ + MP +VLI  L VP +A+
Sbjct: 3   LNLFLRNSNSKNPIFHRSLHFIHFCILRQSEPPHELSTATLHAMPRVVLIFILNVPLSAD 62

Query: 78  LNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVH 117
           L H  +FNLH H L LQ   IG +++ L  LLPI+ S H
Sbjct: 63  LKHLIIFNLHLHFLLLQPGNIGLEHVRLWGLLPIHTSAH 101

[Close]
BLAST of Csa1G527880 vs. NCBI nr
Match: gi|965657274|dbj|BAT73693.1| (hypothetical protein VIGAN_01120700 [Vigna angularis var. angularis])

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-14
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1 

Query: 6   LAGNLNGFHICFLPIRLRNHHSKNSVLHRCPNFLRFHILRHSKSPLKLSTASFYPMPFLV 65
           L  NLNG     L I L N +SKN++LHR  +F+ F ILR S+ P +L TA+ + MP +V
Sbjct: 41  LTRNLNGLDFRLLNIFLGNSNSKNTILHRSLHFIHFCILRQSEPPQELPTATLHTMPRIV 100

Query: 66  LILFLYVPFAANLNHSSVFNLHFHLLFLQSRQIGFQNMSLRRLLPIYMSVH 117
           LI  L V   A L +  +F L+ H L LQS  +  +++ L RLLP++   H
Sbjct: 101 LIFLLNVSLTAYLKNLIIFYLNLHFLLLQSWNLSLEHVCLWRLLPVHTGTH 151

The following BLAST results are available for this feature:
BLAST of Csa1G527880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LY58_CUCSA1.2e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527880 PE=4 SV=1[more]
V4LLN1_EUTSA1.7e-1945.13Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017313mg PE=4 SV=1[more]
A0A059D751_EUCGR1.1e-1841.82Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02741 PE=4 SV=1[more]
C6T167_SOYBN1.0e-1648.48Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
A0A0S3QZF3_PHAAN1.3e-1442.34Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G120700 PE=... [more]
BLAST of Csa1G527880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210676|gb|KGN65772.1|1.8e-62100.00hypothetical protein Csa_1G527880 [Cucumis sativus][more]
gi|567210129|ref|XP_006410007.1|2.4e-1945.13hypothetical protein EUTSA_v10017313mg [Eutrema salsugineum][more]
gi|629121545|gb|KCW86035.1|1.6e-1841.82hypothetical protein EUGRSUZ_B02741 [Eucalyptus grandis][more]
gi|351724093|ref|NP_001235510.1|1.5e-1648.48uncharacterized protein LOC100500262 [Glycine max][more]
gi|965657274|dbj|BAT73693.1|1.8e-1442.34hypothetical protein VIGAN_01120700 [Vigna angularis var. angularis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU101948cucumber EST collection version 3.0transcribed_cluster
CU153444cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G527880.1Csa1G527880.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU101948CU101948transcribed_cluster
CU153444CU153444transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G527880CmaCh04G011470Cucurbita maxima (Rimu)cmacuB690
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G527880Cucurbita maxima (Rimu)cmacuB219
Csa1G527880Cucurbita maxima (Rimu)cmacuB234
Csa1G527880Cucurbita maxima (Rimu)cmacuB427
Csa1G527880Cucurbita maxima (Rimu)cmacuB812
Csa1G527880Cucurbita moschata (Rifu)cmocuB204
Csa1G527880Cucurbita moschata (Rifu)cmocuB220
Csa1G527880Cucurbita moschata (Rifu)cmocuB416
Csa1G527880Cucurbita moschata (Rifu)cmocuB804
Csa1G527880Melon (DHL92) v3.5.1cumeB028
Csa1G527880Melon (DHL92) v3.5.1cumeB063
Csa1G527880Melon (DHL92) v3.5.1cumeB064
Csa1G527880Watermelon (Charleston Gray)cuwcgB004
Csa1G527880Watermelon (Charleston Gray)cuwcgB047
Csa1G527880Watermelon (97103) v1cuwmB004
Csa1G527880Watermelon (97103) v1cuwmB021
Csa1G527880Watermelon (97103) v1cuwmB073
Csa1G527880Cucurbita pepo (Zucchini)cpecuB507
Csa1G527880Cucurbita pepo (Zucchini)cpecuB535
Csa1G527880Bottle gourd (USVL1VR-Ls)culsiB030
Csa1G527880Bottle gourd (USVL1VR-Ls)culsiB048
Csa1G527880Cucumber (Gy14) v2cgybcuB002
Csa1G527880Cucumber (Gy14) v2cgybcuB099
Csa1G527880Cucumber (Gy14) v2cgybcuB241
Csa1G527880Melon (DHL92) v3.6.1cumedB023
Csa1G527880Melon (DHL92) v3.6.1cumedB057
Csa1G527880Melon (DHL92) v3.6.1cumedB058
Csa1G527880Silver-seed gourdcarcuB0171
Csa1G527880Silver-seed gourdcarcuB0412
Csa1G527880Silver-seed gourdcarcuB0471
Csa1G527880Silver-seed gourdcarcuB1010
Csa1G527880Watermelon (97103) v2cuwmbB015
Csa1G527880Watermelon (97103) v2cuwmbB043
Csa1G527880Wax gourdcuwgoB017
Csa1G527880Wax gourdcuwgoB045
Csa1G527880Wax gourdcuwgoB048
Csa1G527880Cucumber (Chinese Long) v2cucuB020
Csa1G527880Cucumber (Chinese Long) v2cucuB036
Csa1G527880Cucumber (Gy14) v1cgycuB189
Csa1G527880Cucumber (Gy14) v1cgycuB210
Csa1G527880Cucumber (Gy14) v1cgycuB267