Csa1G471470 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G471470
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionMalate dehydrogenase
LocationChr1 : 17035849 .. 17036304 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTACACAACACAACAAAGCTGGTTTTGTTTTTCATCTCTTCCGGATTTTGGCTATTGTCGAACCGCCTAATTCTATTTGTTTGGCACTATTCTGTTTCACAGACTGAAGCTGAGTTGCTAGCTGAGAAGAGATGTGTGGCTCACCTCACAGGAGAGGTCAGATTTAGCTCCTCTTTCTTTCCCCCTCTAATGCAACTTCACATCTTTCTCTTATTGATCCATTAACAACGGACTATTTCTTCCATATTGTATCAGGGTATTGCTGTATGTGATCTACCAGGAGACACAATGCTTCCTGGAGAAATGTAAGGCTCATCAATCACATGCCTTTGAGCCTCATATAACTTTATATTTGAGCTGCTTTATGTTACCTTCCTCTTTGAATTAATCCACATATTATATGTGAATATTGCATGTAAGTTGCGGGCAATGATAGTAAAATTATTAATA

mRNA sequence

ATGAATTTACACAACACAACAAAGCTGGTTTTGTTTTTCATCTCTTCCGGATTTTGGCTATTGTCGAACCGCCTAATTCTATTTGTTTGGCACTATTCTGTTTCACAGACTGAAGCTGAGTTGCTAGCTGAGAAGAGATGTGTGGCTCACCTCACAGGAGAGGGTATTGCTGTATGTGATCTACCAGGAGACACAATGCTTCCTGGAGAAATGTAA

Coding sequence (CDS)

ATGAATTTACACAACACAACAAAGCTGGTTTTGTTTTTCATCTCTTCCGGATTTTGGCTATTGTCGAACCGCCTAATTCTATTTGTTTGGCACTATTCTGTTTCACAGACTGAAGCTGAGTTGCTAGCTGAGAAGAGATGTGTGGCTCACCTCACAGGAGAGGGTATTGCTGTATGTGATCTACCAGGAGACACAATGCTTCCTGGAGAAATGTAA

Protein sequence

MNLHNTTKLVLFFISSGFWLLSNRLILFVWHYSVSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM*
Homology
[Close]
BLAST of Csa1G471470 vs. Swiss-Prot
Match: MDHP_MEDSA (Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEK+CVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 400 LAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 437

[Close]
BLAST of Csa1G471470 vs. Swiss-Prot
Match: MDHP_PEA (Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-13
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEK+CVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 404 LAKTEAELLAEKKCVAHLTGEGIAVCDLPGDTMLPGEM 441

[Close]
BLAST of Csa1G471470 vs. Swiss-Prot
Match: MDHP_FLABI (Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.5e-11
Identity = 31/38 (81.58%), Postives = 33/38 (86.84%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           + ++E ELLAEK+CVAHLTGEGIAVCDLP DTMLPGEM
Sbjct: 416 IKKSEDELLAEKKCVAHLTGEGIAVCDLPEDTMLPGEM 453

[Close]
BLAST of Csa1G471470 vs. Swiss-Prot
Match: MDHP_MAIZE (Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-11
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = 1 

Query: 28  FVWHYSVSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           F+W   + ++EAELLAEK+CVAHLTGEG A CDLP DTMLPGE+
Sbjct: 390 FLWE-RIKKSEAELLAEKKCVAHLTGEGNAFCDLPEDTMLPGEV 432

[Close]
BLAST of Csa1G471470 vs. Swiss-Prot
Match: MDHP_MESCR (Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=MDH1 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.5e-11
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLP-GDTMLPGEM 72
           + ++E ELLAEKRC AHLTGEG+AVCDLP GDTMLPGEM
Sbjct: 403 IKKSEEELLAEKRCTAHLTGEGVAVCDLPAGDTMLPGEM 441

[Close]
BLAST of Csa1G471470 vs. TrEMBL
Match: A0A0A0LXT1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G471470 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MNLHNTTKLVLFFISSGFWLLSNRLILFVWHYSVSQTEAELLAEKRCVAHLTGEGIAVCD 60
          MNLHNTTKLVLFFISSGFWLLSNRLILFVWHYSVSQTEAELLAEKRCVAHLTGEGIAVCD
Sbjct: 1  MNLHNTTKLVLFFISSGFWLLSNRLILFVWHYSVSQTEAELLAEKRCVAHLTGEGIAVCD 60

Query: 61 LPGDTMLPGEM 72
          LPGDTMLPGEM
Sbjct: 61 LPGDTMLPGEM 71

[Close]
BLAST of Csa1G471470 vs. TrEMBL
Match: A0A0B2RTY5_GLYSO (Malate dehydrogenase [NADP], chloroplastic OS=Glycine soja GN=glysoja_017005 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-12
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 399 IAKTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 436

[Close]
BLAST of Csa1G471470 vs. TrEMBL
Match: A0A0B2NV75_GLYSO (Malate dehydrogenase [NADP], chloroplastic OS=Glycine soja GN=glysoja_000618 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-12
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 376 IAKTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 413

[Close]
BLAST of Csa1G471470 vs. TrEMBL
Match: V7BEI7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G140600g PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-12
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 399 IAKTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 436

[Close]
BLAST of Csa1G471470 vs. TrEMBL
Match: K7N4G1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G192200 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.9e-12
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 387 IAKTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 424

[Close]
BLAST of Csa1G471470 vs. TAIR10
Match: AT5G58330.1 (AT5G58330.1 lactate/malate dehydrogenase family protein)

HSP 1 Score: 64.3 bits (155), Expect = 3.5e-11
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDL-PGDTMLPGEM 72
           ++++EAELLAEKRCVAHLTGEGIA CDL P DTMLPGE+
Sbjct: 405 IAKSEAELLAEKRCVAHLTGEGIAYCDLGPVDTMLPGEV 443

[Close]
BLAST of Csa1G471470 vs. NCBI nr
Match: gi|700210536|gb|KGN65632.1| (hypothetical protein Csa_1G471470 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MNLHNTTKLVLFFISSGFWLLSNRLILFVWHYSVSQTEAELLAEKRCVAHLTGEGIAVCD 60
          MNLHNTTKLVLFFISSGFWLLSNRLILFVWHYSVSQTEAELLAEKRCVAHLTGEGIAVCD
Sbjct: 1  MNLHNTTKLVLFFISSGFWLLSNRLILFVWHYSVSQTEAELLAEKRCVAHLTGEGIAVCD 60

Query: 61 LPGDTMLPGEM 72
          LPGDTMLPGEM
Sbjct: 61 LPGDTMLPGEM 71

[Close]
BLAST of Csa1G471470 vs. NCBI nr
Match: gi|1012241957|ref|XP_015941136.1| (PREDICTED: malate dehydrogenase [NADP])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 400 IAKTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 437

[Close]
BLAST of Csa1G471470 vs. NCBI nr
Match: gi|449449381|ref|XP_004142443.1| (PREDICTED: malate dehydrogenase [NADP])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 400 IAKTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 437

[Close]
BLAST of Csa1G471470 vs. NCBI nr
Match: gi|734312772|gb|KHN00950.1| (Malate dehydrogenase [NADP])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 376 IAKTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 413

[Close]
BLAST of Csa1G471470 vs. NCBI nr
Match: gi|1012349488|gb|KYP60678.1| (hypothetical protein KK1_023087 [Cajanus cajan])

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 35/38 (92.11%), Postives = 38/38 (100.00%), Query Frame = 1 

Query: 34  VSQTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 72
           +++TEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM
Sbjct: 379 IAKTEAELLAEKRCVAHLTGEGIAVCDLPGDTMLPGEM 416

The following BLAST results are available for this feature:
BLAST of Csa1G471470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MDHP_MEDSA2.7e-1389.47Malate dehydrogenase [NADP], chloroplastic OS=Medicago sativa GN=MDH1 PE=2 SV=1[more]
MDHP_PEA2.7e-1389.47Malate dehydrogenase [NADP], chloroplastic OS=Pisum sativum PE=1 SV=2[more]
MDHP_FLABI2.5e-1181.58Malate dehydrogenase [NADP], chloroplastic OS=Flaveria bidentis PE=1 SV=1[more]
MDHP_MAIZE9.5e-1170.45Malate dehydrogenase [NADP], chloroplastic OS=Zea mays PE=1 SV=1[more]
MDHP_MESCR9.5e-1179.49Malate dehydrogenase [NADP], chloroplastic OS=Mesembryanthemum crystallinum GN=M... [more]
BLAST of Csa1G471470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXT1_CUCSA2.1e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G471470 PE=4 SV=1[more]
A0A0B2RTY5_GLYSO7.9e-1292.11Malate dehydrogenase [NADP], chloroplastic OS=Glycine soja GN=glysoja_017005 PE=... [more]
A0A0B2NV75_GLYSO7.9e-1292.11Malate dehydrogenase [NADP], chloroplastic OS=Glycine soja GN=glysoja_000618 PE=... [more]
V7BEI7_PHAVU7.9e-1292.11Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G140600g PE=4 SV=1[more]
K7N4G1_SOYBN7.9e-1292.11Uncharacterized protein OS=Glycine max GN=GLYMA_20G192200 PE=4 SV=1[more]
BLAST of Csa1G471470 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58330.13.5e-1179.49 lactate/malate dehydrogenase family protein[more]
BLAST of Csa1G471470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210536|gb|KGN65632.1|3.1e-33100.00hypothetical protein Csa_1G471470 [Cucumis sativus][more]
gi|1012241957|ref|XP_015941136.1|1.1e-1192.11PREDICTED: malate dehydrogenase [NADP][more]
gi|449449381|ref|XP_004142443.1|1.1e-1192.11PREDICTED: malate dehydrogenase [NADP][more]
gi|734312772|gb|KHN00950.1|1.1e-1192.11Malate dehydrogenase [NADP][more]
gi|1012349488|gb|KYP60678.1|1.1e-1192.11hypothetical protein KK1_023087 [Cajanus cajan][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015976 carbon utilization
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0009657 plastid organization
biological_process GO:0010207 photosystem II assembly
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006108 malate metabolic process
biological_process GO:0046487 glyoxylate metabolic process
cellular_component GO:0048046 apoplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009579 thylakoid
molecular_function GO:0030060 L-malate dehydrogenase activity
molecular_function GO:0046554 malate dehydrogenase (NADP+) activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G471470.1Csa1G471470.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G471470Cucumber (Gy14) v2cgybcuB002
Csa1G471470Cucumber (Gy14) v2cgybcuB242
Csa1G471470Melon (DHL92) v3.6.1cumedB011
Csa1G471470Melon (DHL92) v3.6.1cumedB075
Csa1G471470Silver-seed gourdcarcuB0162
Csa1G471470Silver-seed gourdcarcuB0576
Csa1G471470Silver-seed gourdcarcuB0815
Csa1G471470Watermelon (97103) v2cuwmbB012
Csa1G471470Watermelon (97103) v2cuwmbB031
Csa1G471470Watermelon (97103) v2cuwmbB033
Csa1G471470Wax gourdcuwgoB020
Csa1G471470Wax gourdcuwgoB022
Csa1G471470Wax gourdcuwgoB029
Csa1G471470Cucumber (Chinese Long) v2cucuB038
Csa1G471470Cucumber (Chinese Long) v2cucuB048
Csa1G471470Cucumber (Gy14) v1cgycuB017
Csa1G471470Cucumber (Gy14) v1cgycuB315
Csa1G471470Cucurbita maxima (Rimu)cmacuB205
Csa1G471470Cucurbita maxima (Rimu)cmacuB398
Csa1G471470Cucurbita maxima (Rimu)cmacuB503
Csa1G471470Cucurbita maxima (Rimu)cmacuB650
Csa1G471470Cucurbita maxima (Rimu)cmacuB847
Csa1G471470Cucurbita moschata (Rifu)cmocuB190
Csa1G471470Cucurbita moschata (Rifu)cmocuB386
Csa1G471470Cucurbita moschata (Rifu)cmocuB638
Csa1G471470Cucurbita moschata (Rifu)cmocuB834
Csa1G471470Melon (DHL92) v3.5.1cumeB016
Csa1G471470Melon (DHL92) v3.5.1cumeB038
Csa1G471470Melon (DHL92) v3.5.1cumeB080
Csa1G471470Watermelon (Charleston Gray)cuwcgB025
Csa1G471470Watermelon (Charleston Gray)cuwcgB036
Csa1G471470Watermelon (97103) v1cuwmB009
Csa1G471470Watermelon (97103) v1cuwmB031
Csa1G471470Watermelon (97103) v1cuwmB052
Csa1G471470Cucurbita pepo (Zucchini)cpecuB019
Csa1G471470Cucurbita pepo (Zucchini)cpecuB054
Csa1G471470Cucurbita pepo (Zucchini)cpecuB231
Csa1G471470Cucurbita pepo (Zucchini)cpecuB475
Csa1G471470Cucurbita pepo (Zucchini)cpecuB514
Csa1G471470Bottle gourd (USVL1VR-Ls)culsiB017
Csa1G471470Bottle gourd (USVL1VR-Ls)culsiB031