Csa1G459500 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G459500
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Cold acclimation protein COR413-TM1; contains IPR008892 (Cold acclimation WCOR413)
Location	Chr1 : 16503276 .. 16505483 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACTTTCCTATCGGTTTCGGGGAGGATAGCCGGTTCCGGTTTTGGTTTTGTTGAAGTTCATCAGATGTACAGGCGACAGTTTGCTTGTTGAATCACAACTAGAGAATCAAGGTCACTGTTTCAATTTCATTTCCAAATCCGAGAAAAGATAAAGGCCGAATCAAGCAAAGGAAGAAGAGGGGAAATGGTTTGTGTATCTCTATCTTCTGCTGTTTCACTTTATATTCCTTCTTTCTACAAATCCAAACTCTCCGTTCCTCTCTCCCTAAGATCTTCACCGCCAAATGCAAAGCTCTCGTTAAATTCTGCCGCTAAACAGAGTTCAATCTGTTACAATCCGCTCAGGTAATTTCAATGACAGATTGATTGAGTAGTAGTGGTTTTGGTTTTAAAAATTTGAGAGTTTTGAAAAGAAAAGTTGTTTGATCAGGTTTGCTGTCGGTAGCGAGGGTATTAACAAGAAGAAGAGTCGTGGTTTAAGTGCTGTTTGTTACGCTATGCCTGTTAACACTCGCACTCTTCAGTGGATCTCCACCATTTCTTCTGTGTAATTCTCTCTTCTTTCTATCTGAGTATTGTATAATTGGATATAAGCACCATCTCGTCTAATATATGATATTGTATTTTATGTGGAACTGTGCTTTTATTTATCGTTAGTAATTTGTGATACGTTTCTGTAGCATCAGCACAGAATGGTCAATTTTAACCAATACTCAGATGGGGTTCAAATGCTTTGCCACAATTCTTTTGATTCCGGTGGTTATTTAGTTTCGTTTAAGTCGGTAGCATTCAGTGGTTATATTTATACAGTCAACATGCCACCAGTTTCACCTTTATCTGCTGTTTCAGAGTCCATTCCACCTCCACGTATCAAAGTATAACTTTTAAAACCCTAGGTTTCTTCTTCAGGGTTTTAATGCTCGCAAAGGGAACTGGGATTCAGAAGTCATTTATCGTTCCGCTATTTGCACTTCAGGCGCCTGCAAGTGTTATCTCCTGGATTAAGTAAGCCTCGTGTAAAATCTCTATCAGTATATATCAACAGGATGCCAAGATCTATGAGTAATCAGTTCCACTTTCTAAATGGCTCAATTTTTTGGTTCTATCTTCTATATCAGAGGAGAGTACGGCATTTGGAGCGCTTTTCTGGCACTTCTTGTTCGACTGTTCTTCTTCATCCCTGGTATTCTATTCTGTCTTCTGATTTTCTTTACTTAGCTAATGAATTTAGTGCACTGTTTAGCATTCACTGTATTCGGGAGGAACTTAGTTCATAGCTTGGCTAGAAACGTGTTAGTTTGAGCCTCACTTAGTTCAATTAACTGAAAGGGTTCACTTCGTACAATCTCTTGAATGAATAGAAAATTCATAGGAAATCGAATGCTGGGTTCTTTTGGATGTAGGTGAATTGGAGATACCATTCATATCACTACTTTTGGTGATTGTGGCCCCATATCAAGTCCAAAACTTAAGGTAAACAACCTTTTAATCATATTTCACTTTATAATTTTTCCAATCTTAGCATTTGATCATGTTAGAATTAGCGGGCTTGTTGTATGTTGAAAGTCCCAGAGTTTGTTAAGATTTTATAGTGCCCTAATTATCTTTTATTATTTTTATTATGGGTTCTATAACCTATAAATAAATGCTCCCTATATCATTATGAGATAGAGAAAAATAATAAAAAAATAACATCGTGGTTTTTCTCCTAAAATGGTTTATCTTTCTATTTTTCTTCATTCAATAGATCATTATCTGTCATTTGCAGGGGAACTCAAGAAGGGTGCATTATCTCCCTACTGATTGCAGCATATTTGGCCTTCCAGCATTTCTCTCGAGCAGGCAGCTTTCAGAGAGCTTTTGATCAGAATTCAATTGTTGCAACAGTAGCAGTCGTTTGTATTACCGCTGTTTCATTCCTGTTCGTGATCTGAGTTCCTTAGTCACTCCCAAGTAAACCTTATGGGTTAAATCTTCAATAAACACTATTGTTCGTCCTGTAATAGTTACACAATAGTTAGAATGTACAGACCTTCCTTTTCATGTTTATAAATACTATAAAGAAATGTTTATTTCTTTTTGCTTGTTTAATCTAATCATCATCCTGTGTCTGTTTTTAGTTATCACGAAATTGCATCGGATTGAACCTGAACAATTACTTGTTTCCCTTTCAAATAACATCAGCACTAACTAGTTATATATG

mRNA sequence

ATGGTTTGTGTATCTCTATCTTCTGCTGTTTCACTTTATATTCCTTCTTTCTACAAATCCAAACTCTCCGTTCCTCTCTCCCTAAGATCTTCACCGCCAAATGCAAAGCTCTCGTTAAATTCTGCCGCTAAACAGAGTTCAATCTGTTACAATCCGCTCAGGTTTGCTGTCGGTAGCGAGGGTATTAACAAGAAGAAGAGTCGTGGTTTAAGTGCTGTTTGTTACGCTATGCCTGTTAACACTCGCACTCTTCAGTGGATCTCCACCATTTCTTCTGTGGTTTTAATGCTCGCAAAGGGAACTGGGATTCAGAAGTCATTTATCGTTCCGCTATTTGCACTTCAGGCGCCTGCAAGTGTTATCTCCTGGATTAAAGGAGAGTACGGCATTTGGAGCGCTTTTCTGGCACTTCTTGTTCGACTGTTCTTCTTCATCCCTGGTGAATTGGAGATACCATTCATATCACTACTTTTGGTGATTGTGGCCCCATATCAAGTCCAAAACTTAAGGGGAACTCAAGAAGGGTGCATTATCTCCCTACTGATTGCAGCATATTTGGCCTTCCAGCATTTCTCTCGAGCAGGCAGCTTTCAGAGAGCTTTTGATCAGAATTCAATTGTTGCAACAGTAGCAGTCGTTTGTATTACCGCTGTTTCATTCCTGTTCGTGATCTGA

Coding sequence (CDS)

ATGGTTTGTGTATCTCTATCTTCTGCTGTTTCACTTTATATTCCTTCTTTCTACAAATCCAAACTCTCCGTTCCTCTCTCCCTAAGATCTTCACCGCCAAATGCAAAGCTCTCGTTAAATTCTGCCGCTAAACAGAGTTCAATCTGTTACAATCCGCTCAGGTTTGCTGTCGGTAGCGAGGGTATTAACAAGAAGAAGAGTCGTGGTTTAAGTGCTGTTTGTTACGCTATGCCTGTTAACACTCGCACTCTTCAGTGGATCTCCACCATTTCTTCTGTGGTTTTAATGCTCGCAAAGGGAACTGGGATTCAGAAGTCATTTATCGTTCCGCTATTTGCACTTCAGGCGCCTGCAAGTGTTATCTCCTGGATTAAAGGAGAGTACGGCATTTGGAGCGCTTTTCTGGCACTTCTTGTTCGACTGTTCTTCTTCATCCCTGGTGAATTGGAGATACCATTCATATCACTACTTTTGGTGATTGTGGCCCCATATCAAGTCCAAAACTTAAGGGGAACTCAAGAAGGGTGCATTATCTCCCTACTGATTGCAGCATATTTGGCCTTCCAGCATTTCTCTCGAGCAGGCAGCTTTCAGAGAGCTTTTGATCAGAATTCAATTGTTGCAACAGTAGCAGTCGTTTGTATTACCGCTGTTTCATTCCTGTTCGTGATCTGA

Protein sequence

MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSEGINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI*

Homology

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BLAST of Csa1G459500 vs. Swiss-Prot
Match: CRIM2_ARATH (Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thaliana GN=COR413IM2 PE=1 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 8.0e-64
Identity = 132/231 (57.14%), Postives = 162/231 (70.13%), Query Frame = 1


Query: 2   VCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRF------ 61
           +C+S S  VSL+       K  + L LR  P N     +S    S +C+NPLR       
Sbjct: 4   LCLSSSRIVSLH-----HQKPFLALKLRPRPSNISGLGHST---SVVCFNPLRLSADRQR 63

Query: 62  -AVGSEGINKKKSRGLSAVCYAMPV-NTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFA 121
            A  S    K++ RG S VCYA P+ +   LQWISTIS V LM A+GTGI KSF+VPLFA
Sbjct: 64  TATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFA 123

Query: 122 LQAPASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQ 181
           LQAP  ++SW+KGEYGIW+AFLALL RLFF  P ELE+PFI+LLLVIVAPYQV ++RG Q
Sbjct: 124 LQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMSIRGKQ 183

Query: 182 EGCIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           EG I+SL I+ +LAFQHFSRAG+ Q+AFDQNS++ATVA++ +T VSFLF+I
Sbjct: 184 EGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 226

[Close]

BLAST of Csa1G459500 vs. Swiss-Prot
Match: CRIM1_ARATH (Cold-regulated 413 inner membrane protein 1, chloroplastic OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.2e-63
Identity = 123/231 (53.25%), Postives = 167/231 (72.29%), Query Frame = 1


Query: 2   VCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSS-ICYNPLRF----- 61
           +C+S S  VSL+       K  + L LRS P +    L+   + +S +C+NPLR      
Sbjct: 4   LCLSSSRIVSLH-----HQKPFLSLKLRSRPSD----LSGLGRHTSPVCFNPLRLSGDRQ 63

Query: 62  --AVGSEGINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFA 121
             A  S  + K++ RG S VCYA P++  +LQWISTIS + LMLA+GTGI KS +VPLFA
Sbjct: 64  RTATVSTRVEKRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFA 123

Query: 122 LQAPASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQ 181
           L AP+S+++WIKGEYG+W+AFLAL+ RLFF  PGELE+PFI+LLLVIVAPYQV N+RG Q
Sbjct: 124 LHAPSSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQ 183

Query: 182 EGCIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           EG II++ I+ +LAFQHFSRAGS ++A+++ S++ATVA++ +T VS L ++
Sbjct: 184 EGAIIAIAISGFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVSLLLLL 225

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BLAST of Csa1G459500 vs. Swiss-Prot
Match: CRPM4_ARATH (Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana GN=At4g37220 PE=2 SV=2)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = 1


Query: 81  TRTLQWISTISSVVLMLAKGTG----IQKSFIVPLFALQAPASVISWIKGEYGIWSAFLA 140
           T  LQW ++I ++ L++   T     +  + +VP      P+ +  +  G++G W A +A
Sbjct: 47  TSVLQWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIA 106

Query: 141 LLVRLFF--FIPGELEIPFISLLLVIVAPYQVQ-NLRGTQEGCIISLLIAAYLAFQHFSR 200
           ++VRLFF    P  LEIP   +L+V+V+P  +   LR +  G +I L+IA YL  +H   
Sbjct: 107 IIVRLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKA 166

Query: 201 AGSFQRAFDQ-NSIVATVAVVCI 216
           +G F+ +F Q N I  T+ +V +
Sbjct: 167 SGGFKNSFTQKNGISNTIGIVAL 189

[Close]

BLAST of Csa1G459500 vs. Swiss-Prot
Match: CRPM2_ARATH (Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM2 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 6.4e-13
Identity = 40/127 (31.50%), Postives = 74/127 (58.27%), Query Frame = 1


Query: 84  LQWISTISSVVLMLAKGTG----IQKSFIVPLFALQAPASVISWIKGEYGIWSAFLALLV 143
           L+++++ +++ L++   T     +  S ++P   L  P+ + +++ G+ G W AF+A+++
Sbjct: 51  LKFLASFAAIYLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVL 110

Query: 144 RLFF--FIPGELEIPFISLLLVIVAP-YQVQNLRGTQEGCIISLLIAAYLAFQHFSRAGS 203
           RLFF    P  LE+P   +LL++V+P +   ++RGT  G +ISL I  YL  +H   +G 
Sbjct: 111 RLFFPKHFPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGG 170

[Close]

BLAST of Csa1G459500 vs. Swiss-Prot
Match: CRPM1_ARATH (Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana GN=COR413PM1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.9e-12
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 1


Query: 81  TRTLQWISTISSVVLMLAKGTG----IQKSFIVPLFALQAPASVISWIKGEYGIWSAFLA 140
           T  L+W+++I+++ L++   T     +  S ++P      P+ +    +GE G W AF+A
Sbjct: 45  TSVLEWVASIAAIYLLVLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVA 104

Query: 141 LLVRLFF--FIPGELEIPFISLLLVIVAPYQVQ-NLRGTQEGCIISLLIAAYLAFQHFSR 200
           ++V+LFF       LE+P   +LL +VAP  +    R +  G  I L I  YL  +H   
Sbjct: 105 VVVQLFFPKHAREYLELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRA 164

Query: 201 AGSFQRAFDQ-NSIVATVAVVCI 216
           +G F+ AF + N I  TV ++C+
Sbjct: 165 SGGFRNAFTKANGISNTVGIICL 187

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BLAST of Csa1G459500 vs. TrEMBL
Match: A0A0A0LXM7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G459500 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 3.0e-118
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60
           MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE
Sbjct: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60

Query: 61  GINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPASV 120
           GINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPASV
Sbjct: 61  GINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPASV 120

Query: 121 ISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCIISL 180
           ISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCIISL
Sbjct: 121 ISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCIISL 180

Query: 181 LIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           LIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI
Sbjct: 181 LIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 224

[Close]

BLAST of Csa1G459500 vs. TrEMBL
Match: A0A061GL44_THECC (Cold regulated 314 thylakoid membrane 2 isoform 1 OS=Theobroma cacao GN=TCM_029560 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.6e-72
Identity = 146/226 (64.60%), Postives = 179/226 (79.20%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNA--KLSLNSAAKQSSICYNPLRFAVG 60
           MV VS+S A +        ++ +   SLRS P  A  KLS    +  SSI +NPL F++ 
Sbjct: 1   MVTVSISPAPAAQSLYSRNARNAPFFSLRSGPFQATKKLSTLGHSSTSSISFNPLTFSIK 60

Query: 61  SEGINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPA 120
            + I KKKS+G  AVCYA P++ R LQWISTISS VL+LAKGT IQK F+VPLFA QAPA
Sbjct: 61  YKEI-KKKSKGSRAVCYAAPLSPRNLQWISTISSAVLLLAKGTAIQKQFLVPLFAFQAPA 120

Query: 121 SVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCII 180
           S+ISW+KGEYG+W+AFLALLVRLFF+IPGELE+PF++LLLVIVAPYQ  NLRGTQ+G I+
Sbjct: 121 SIISWMKGEYGLWAAFLALLVRLFFYIPGELELPFVALLLVIVAPYQAINLRGTQQGAIV 180

Query: 181 SLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           +L+IAAYLAFQHFSRAGS Q+A DQ S++AT+A+VCITAVSFLF+I
Sbjct: 181 ALVIAAYLAFQHFSRAGSLQKALDQGSVIATIAIVCITAVSFLFLI 225

[Close]

BLAST of Csa1G459500 vs. TrEMBL
Match: A0A061GD66_THECC (Cold regulated 314 thylakoid membrane 2 isoform 2 OS=Theobroma cacao GN=TCM_029560 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-70
Identity = 146/227 (64.32%), Postives = 179/227 (78.85%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNA--KLSLNSAAKQSSICYNPLRFAVG 60
           MV VS+S A +        ++ +   SLRS P  A  KLS    +  SSI +NPL F++ 
Sbjct: 1   MVTVSISPAPAAQSLYSRNARNAPFFSLRSGPFQATKKLSTLGHSSTSSISFNPLTFSIK 60

Query: 61  SEGINKKKSRGLSAVCYAMPVNTRTLQWISTISSV-VLMLAKGTGIQKSFIVPLFALQAP 120
            + I KKKS+G  AVCYA P++ R LQWISTISS  VL+LAKGT IQK F+VPLFA QAP
Sbjct: 61  YKEI-KKKSKGSRAVCYAAPLSPRNLQWISTISSARVLLLAKGTAIQKQFLVPLFAFQAP 120

Query: 121 ASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCI 180
           AS+ISW+KGEYG+W+AFLALLVRLFF+IPGELE+PF++LLLVIVAPYQ  NLRGTQ+G I
Sbjct: 121 ASIISWMKGEYGLWAAFLALLVRLFFYIPGELELPFVALLLVIVAPYQAINLRGTQQGAI 180

Query: 181 ISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           ++L+IAAYLAFQHFSRAGS Q+A DQ S++AT+A+VCITAVSFLF+I
Sbjct: 181 VALVIAAYLAFQHFSRAGSLQKALDQGSVIATIAIVCITAVSFLFLI 226

[Close]

BLAST of Csa1G459500 vs. TrEMBL
Match: A0A067GRI6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027376mg PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.5e-69
Identity = 144/227 (63.44%), Postives = 177/227 (77.97%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60
           M+  SLSS+ S    S Y + ++ P+  R +      S +S+   SS  +NPLR +V  E
Sbjct: 1   MLPFSLSSSPSTRSFSLYNN-INQPILTRQTKLFGSRSFSSS--WSSFAFNPLRLSVNHE 60

Query: 61  G---INKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAP 120
               + K+KSRG SAVCYA P+  R LQWISTISS VLMLAKGT + KSF+VPLFALQAP
Sbjct: 61  EMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAP 120

Query: 121 ASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCI 180
           A VISWIKGEYGIW+AFLALLVRLFFFIPGELE+PF++LLLVIVAP+QV  LRGTQ+G I
Sbjct: 121 ADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAI 180

Query: 181 ISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           ISL+IA YLAFQHFSRAG+ ++AF+Q S+VAT+A++CITA+S LF+I
Sbjct: 181 ISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI 224

[Close]

BLAST of Csa1G459500 vs. TrEMBL
Match: W9S382_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_010648 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.7e-68
Identity = 145/232 (62.50%), Postives = 174/232 (75.00%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPL--RFAVG 60
           + C    + +SLY      S+ +   SLR        +   A   SS+ YNPL  RF +G
Sbjct: 6   LTCKPWPNTLSLY------SRKTPAFSLRRQAERLDFAPR-AQTSSSLRYNPLSLRFLLG 65

Query: 61  SEGI------NKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLF 120
           +EGI       K+ SRG  AVCYA P++ R LQWIST+SS +LMLA+GT I+KSFI+PLF
Sbjct: 66  NEGILRGMKTKKRGSRGSGAVCYAAPLSVRHLQWISTVSSAILMLARGTAIKKSFIIPLF 125

Query: 121 ALQAPASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGT 180
           A+QAPASVI+WIKGEYGIW+AFLALLVRLFF+IPGELE+PF+ LLLVIVAPYQV NLRGT
Sbjct: 126 AIQAPASVIAWIKGEYGIWTAFLALLVRLFFYIPGELELPFLGLLLVIVAPYQVLNLRGT 185

Query: 181 QEGCIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           QEG IISL+IAAYLA+QHFSRAGS +RAFDQ +IVAT A+V IT VSFL +I
Sbjct: 186 QEGAIISLVIAAYLAYQHFSRAGSLKRAFDQGAIVATSAIVGITVVSFLLLI 230

[Close]

BLAST of Csa1G459500 vs. TAIR10
Match: AT1G29390.1 (AT1G29390.1 cold regulated 314 thylakoid membrane 2)

HSP 1 Score: 245.0 bits (624), Expect = 4.5e-65
Identity = 132/231 (57.14%), Postives = 162/231 (70.13%), Query Frame = 1


Query: 2   VCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRF------ 61
           +C+S S  VSL+       K  + L LR  P N     +S    S +C+NPLR       
Sbjct: 4   LCLSSSRIVSLH-----HQKPFLALKLRPRPSNISGLGHST---SVVCFNPLRLSADRQR 63

Query: 62  -AVGSEGINKKKSRGLSAVCYAMPV-NTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFA 121
            A  S    K++ RG S VCYA P+ +   LQWISTIS V LM A+GTGI KSF+VPLFA
Sbjct: 64  TATVSARAEKRRKRGSSVVCYATPMLSVHNLQWISTISCVALMFARGTGIHKSFVVPLFA 123

Query: 122 LQAPASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQ 181
           LQAP  ++SW+KGEYGIW+AFLALL RLFF  P ELE+PFI+LLLVIVAPYQV ++RG Q
Sbjct: 124 LQAPMGIVSWMKGEYGIWAAFLALLTRLFFSFPVELELPFIALLLVIVAPYQVMSIRGKQ 183

Query: 182 EGCIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           EG I+SL I+ +LAFQHFSRAG+ Q+AFDQNS++ATVA++ +T VSFLF+I
Sbjct: 184 EGAILSLAISCFLAFQHFSRAGTLQKAFDQNSVLATVAIIGVTVVSFLFLI 226

[Close]

BLAST of Csa1G459500 vs. TAIR10
Match: AT1G29395.1 (AT1G29395.1 COLD REGULATED 314 INNER MEMBRANE 1)

HSP 1 Score: 242.3 bits (617), Expect = 2.9e-64
Identity = 123/231 (53.25%), Postives = 167/231 (72.29%), Query Frame = 1


Query: 2   VCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSS-ICYNPLRF----- 61
           +C+S S  VSL+       K  + L LRS P +    L+   + +S +C+NPLR      
Sbjct: 4   LCLSSSRIVSLH-----HQKPFLSLKLRSRPSD----LSGLGRHTSPVCFNPLRLSGDRQ 63

Query: 62  --AVGSEGINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFA 121
             A  S  + K++ RG S VCYA P++  +LQWISTIS + LMLA+GTGI KS +VPLFA
Sbjct: 64  RTATVSTRVEKRRKRGSSVVCYAAPISANSLQWISTISCLALMLARGTGIHKSVVVPLFA 123

Query: 122 LQAPASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQ 181
           L AP+S+++WIKGEYG+W+AFLAL+ RLFF  PGELE+PFI+LLLVIVAPYQV N+RG Q
Sbjct: 124 LHAPSSIVAWIKGEYGVWAAFLALIARLFFTFPGELELPFIALLLVIVAPYQVMNIRGKQ 183

Query: 182 EGCIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           EG II++ I+ +LAFQHFSRAGS ++A+++ S++ATVA++ +T VS L ++
Sbjct: 184 EGAIIAIAISGFLAFQHFSRAGSLEKAYEKGSVLATVAIIGVTVVSLLLLL 225

[Close]

BLAST of Csa1G459500 vs. TAIR10
Match: AT4G37220.1 (AT4G37220.1 Cold acclimation protein WCOR413 family)

HSP 1 Score: 81.6 bits (200), Expect = 6.6e-16
Identity = 47/143 (32.87%), Postives = 77/143 (53.85%), Query Frame = 1


Query: 81  TRTLQWISTISSVVLMLAKGTG----IQKSFIVPLFALQAPASVISWIKGEYGIWSAFLA 140
           T  LQW ++I ++ L++   T     +  + +VP      P+ +  +  G++G W A +A
Sbjct: 47  TSVLQWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIA 106

Query: 141 LLVRLFF--FIPGELEIPFISLLLVIVAPYQVQ-NLRGTQEGCIISLLIAAYLAFQHFSR 200
           ++VRLFF    P  LEIP   +L+V+V+P  +   LR +  G +I L+IA YL  +H   
Sbjct: 107 IIVRLFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKA 166

Query: 201 AGSFQRAFDQ-NSIVATVAVVCI 216
           +G F+ +F Q N I  T+ +V +
Sbjct: 167 SGGFKNSFTQKNGISNTIGIVAL 189

[Close]

BLAST of Csa1G459500 vs. TAIR10
Match: AT3G50830.1 (AT3G50830.1 cold-regulated 413-plasma membrane 2)

HSP 1 Score: 75.9 bits (185), Expect = 3.6e-14
Identity = 40/127 (31.50%), Postives = 74/127 (58.27%), Query Frame = 1


Query: 84  LQWISTISSVVLMLAKGTG----IQKSFIVPLFALQAPASVISWIKGEYGIWSAFLALLV 143
           L+++++ +++ L++   T     +  S ++P   L  P+ + +++ G+ G W AF+A+++
Sbjct: 51  LKFLASFAAIYLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVL 110

Query: 144 RLFF--FIPGELEIPFISLLLVIVAP-YQVQNLRGTQEGCIISLLIAAYLAFQHFSRAGS 203
           RLFF    P  LE+P   +LL++V+P +   ++RGT  G +ISL I  YL  +H   +G 
Sbjct: 111 RLFFPKHFPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGG 170

[Close]

BLAST of Csa1G459500 vs. TAIR10
Match: AT2G15970.1 (AT2G15970.1 cold regulated 413 plasma membrane 1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-13
Identity = 45/143 (31.47%), Postives = 74/143 (51.75%), Query Frame = 1


Query: 81  TRTLQWISTISSVVLMLAKGTG----IQKSFIVPLFALQAPASVISWIKGEYGIWSAFLA 140
           T  L+W+++I+++ L++   T     +  S ++P      P+ +    +GE G W AF+A
Sbjct: 45  TSVLEWVASIAAIYLLVLDRTNWKTNMLTSLLIPYIFFSLPSLIFGIFRGEIGKWIAFVA 104

Query: 141 LLVRLFF--FIPGELEIPFISLLLVIVAPYQVQ-NLRGTQEGCIISLLIAAYLAFQHFSR 200
           ++V+LFF       LE+P   +LL +VAP  +    R +  G  I L I  YL  +H   
Sbjct: 105 VVVQLFFPKHAREYLELPVALVLLAVVAPNLIAGTFRDSWIGLAICLGIGCYLLQEHIRA 164

Query: 201 AGSFQRAFDQ-NSIVATVAVVCI 216
           +G F+ AF + N I  TV ++C+
Sbjct: 165 SGGFRNAFTKANGISNTVGIICL 187

[Close]

BLAST of Csa1G459500 vs. NCBI nr
Match: gi|449459334|ref|XP_004147401.1| (PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 4.3e-118
Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60
           MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE
Sbjct: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60

Query: 61  GINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPASV 120
           GINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPASV
Sbjct: 61  GINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPASV 120

Query: 121 ISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCIISL 180
           ISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCIISL
Sbjct: 121 ISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCIISL 180

Query: 181 LIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           LIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI
Sbjct: 181 LIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 224

[Close]

BLAST of Csa1G459500 vs. NCBI nr
Match: gi|659068337|ref|XP_008443932.1| (PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic-like [Cucumis melo])

HSP 1 Score: 420.2 bits (1079), Expect = 2.2e-114
Identity = 219/229 (95.63%), Postives = 222/229 (96.94%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60
           MVCVSLSSAVSLY PSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE
Sbjct: 1   MVCVSLSSAVSLYPPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60

Query: 61  GI-----NKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQ 120
           GI     NKKK+RGLSA CYAMPVNTRTLQW+STISSVVLMLAKGTGIQKSFIVPLFALQ
Sbjct: 61  GIATAGINKKKNRGLSAACYAMPVNTRTLQWVSTISSVVLMLAKGTGIQKSFIVPLFALQ 120

Query: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180
           APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG
Sbjct: 121 APASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEG 180

Query: 181 CIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           CIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAV+CITAVSFLFVI
Sbjct: 181 CIISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVICITAVSFLFVI 229

[Close]

BLAST of Csa1G459500 vs. NCBI nr
Match: gi|590622923|ref|XP_007025182.1| (Cold regulated 314 thylakoid membrane 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 278.9 bits (712), Expect = 8.0e-72
Identity = 146/226 (64.60%), Postives = 179/226 (79.20%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNA--KLSLNSAAKQSSICYNPLRFAVG 60
           MV VS+S A +        ++ +   SLRS P  A  KLS    +  SSI +NPL F++ 
Sbjct: 1   MVTVSISPAPAAQSLYSRNARNAPFFSLRSGPFQATKKLSTLGHSSTSSISFNPLTFSIK 60

Query: 61  SEGINKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAPA 120
            + I KKKS+G  AVCYA P++ R LQWISTISS VL+LAKGT IQK F+VPLFA QAPA
Sbjct: 61  YKEI-KKKSKGSRAVCYAAPLSPRNLQWISTISSAVLLLAKGTAIQKQFLVPLFAFQAPA 120

Query: 121 SVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCII 180
           S+ISW+KGEYG+W+AFLALLVRLFF+IPGELE+PF++LLLVIVAPYQ  NLRGTQ+G I+
Sbjct: 121 SIISWMKGEYGLWAAFLALLVRLFFYIPGELELPFVALLLVIVAPYQAINLRGTQQGAIV 180

Query: 181 SLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           +L+IAAYLAFQHFSRAGS Q+A DQ S++AT+A+VCITAVSFLF+I
Sbjct: 181 ALVIAAYLAFQHFSRAGSLQKALDQGSVIATIAIVCITAVSFLFLI 225

[Close]

BLAST of Csa1G459500 vs. NCBI nr
Match: gi|590622926|ref|XP_007025183.1| (Cold regulated 314 thylakoid membrane 2 isoform 2 [Theobroma cacao])

HSP 1 Score: 274.2 bits (700), Expect = 2.0e-70
Identity = 146/227 (64.32%), Postives = 179/227 (78.85%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNA--KLSLNSAAKQSSICYNPLRFAVG 60
           MV VS+S A +        ++ +   SLRS P  A  KLS    +  SSI +NPL F++ 
Sbjct: 1   MVTVSISPAPAAQSLYSRNARNAPFFSLRSGPFQATKKLSTLGHSSTSSISFNPLTFSIK 60

Query: 61  SEGINKKKSRGLSAVCYAMPVNTRTLQWISTISSV-VLMLAKGTGIQKSFIVPLFALQAP 120
            + I KKKS+G  AVCYA P++ R LQWISTISS  VL+LAKGT IQK F+VPLFA QAP
Sbjct: 61  YKEI-KKKSKGSRAVCYAAPLSPRNLQWISTISSARVLLLAKGTAIQKQFLVPLFAFQAP 120

Query: 121 ASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCI 180
           AS+ISW+KGEYG+W+AFLALLVRLFF+IPGELE+PF++LLLVIVAPYQ  NLRGTQ+G I
Sbjct: 121 ASIISWMKGEYGLWAAFLALLVRLFFYIPGELELPFVALLLVIVAPYQAINLRGTQQGAI 180

Query: 181 ISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           ++L+IAAYLAFQHFSRAGS Q+A DQ S++AT+A+VCITAVSFLF+I
Sbjct: 181 VALVIAAYLAFQHFSRAGSLQKALDQGSVIATIAIVCITAVSFLFLI 226

[Close]

BLAST of Csa1G459500 vs. NCBI nr
Match: gi|641859367|gb|KDO78057.1| (hypothetical protein CISIN_1g027376mg [Citrus sinensis])

HSP 1 Score: 270.8 bits (691), Expect = 2.2e-69
Identity = 144/227 (63.44%), Postives = 177/227 (77.97%), Query Frame = 1


Query: 1   MVCVSLSSAVSLYIPSFYKSKLSVPLSLRSSPPNAKLSLNSAAKQSSICYNPLRFAVGSE 60
           M+  SLSS+ S    S Y + ++ P+  R +      S +S+   SS  +NPLR +V  E
Sbjct: 1   MLPFSLSSSPSTRSFSLYNN-INQPILTRQTKLFGSRSFSSS--WSSFAFNPLRLSVNHE 60

Query: 61  G---INKKKSRGLSAVCYAMPVNTRTLQWISTISSVVLMLAKGTGIQKSFIVPLFALQAP 120
               + K+KSRG SAVCYA P+  R LQWISTISS VLMLAKGT + KSF+VPLFALQAP
Sbjct: 61  EMKMVTKRKSRGFSAVCYASPLTARNLQWISTISSTVLMLAKGTAVPKSFLVPLFALQAP 120

Query: 121 ASVISWIKGEYGIWSAFLALLVRLFFFIPGELEIPFISLLLVIVAPYQVQNLRGTQEGCI 180
           A VISWIKGEYGIW+AFLALLVRLFFFIPGELE+PF++LLLVIVAP+QV  LRGTQ+G I
Sbjct: 121 ADVISWIKGEYGIWAAFLALLVRLFFFIPGELELPFMALLLVIVAPHQVLTLRGTQQGAI 180

Query: 181 ISLLIAAYLAFQHFSRAGSFQRAFDQNSIVATVAVVCITAVSFLFVI 225
           ISL+IA YLAFQHFSRAG+ ++AF+Q S+VAT+A++CITA+S LF+I
Sbjct: 181 ISLVIAGYLAFQHFSRAGNLRKAFEQGSVVATLAIICITALSCLFLI 224

The following BLAST results are available for this feature:

BLAST of Csa1G459500 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRIM2_ARATH	8.0e-64	57.14	Cold-regulated 413 inner membrane protein 2, chloroplastic OS=Arabidopsis thalia...	[more]
CRIM1_ARATH	5.2e-63	53.25	Cold-regulated 413 inner membrane protein 1, chloroplastic OS=Arabidopsis thalia...	[more]
CRPM4_ARATH	1.2e-14	32.87	Cold-regulated 413 plasma membrane protein 4 OS=Arabidopsis thaliana GN=At4g3722...	[more]
CRPM2_ARATH	6.4e-13	31.50	Cold-regulated 413 plasma membrane protein 2 OS=Arabidopsis thaliana GN=COR413PM...	[more]
CRPM1_ARATH	1.9e-12	31.47	Cold-regulated 413 plasma membrane protein 1 OS=Arabidopsis thaliana GN=COR413PM...	[more]

BLAST of Csa1G459500 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXM7_CUCSA	3.0e-118	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G459500 PE=4 SV=1	[more]
A0A061GL44_THECC	5.6e-72	64.60	Cold regulated 314 thylakoid membrane 2 isoform 1 OS=Theobroma cacao GN=TCM_0295...	[more]
A0A061GD66_THECC	1.4e-70	64.32	Cold regulated 314 thylakoid membrane 2 isoform 2 OS=Theobroma cacao GN=TCM_0295...	[more]
A0A067GRI6_CITSI	1.5e-69	63.44	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g027376mg PE=4 SV=1	[more]
W9S382_9ROSA	3.7e-68	62.50	Uncharacterized protein OS=Morus notabilis GN=L484_010648 PE=4 SV=1	[more]

BLAST of Csa1G459500 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G29390.1	4.5e-65	57.14	cold regulated 314 thylakoid membrane 2	[more]
AT1G29395.1	2.9e-64	53.25	COLD REGULATED 314 INNER MEMBRANE 1	[more]
AT4G37220.1	6.6e-16	32.87	Cold acclimation protein WCOR413 family	[more]
AT3G50830.1	3.6e-14	31.50	cold-regulated 413-plasma membrane 2	[more]
AT2G15970.1	1.1e-13	31.47	cold regulated 413 plasma membrane 1	[more]

BLAST of Csa1G459500 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459334\|ref\|XP_004147401.1\|	4.3e-118	100.00	PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic [Cucumis s...	[more]
gi\|659068337\|ref\|XP_008443932.1\|	2.2e-114	95.63	PREDICTED: cold-regulated 413 inner membrane protein 2, chloroplastic-like [Cucu...	[more]
gi\|590622923\|ref\|XP_007025182.1\|	8.0e-72	64.60	Cold regulated 314 thylakoid membrane 2 isoform 1 [Theobroma cacao]	[more]
gi\|590622926\|ref\|XP_007025183.1\|	2.0e-70	64.32	Cold regulated 314 thylakoid membrane 2 isoform 2 [Theobroma cacao]	[more]
gi\|641859367\|gb\|KDO78057.1\|	2.2e-69	63.44	hypothetical protein CISIN_1g027376mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008892	COR413

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0009631	cold acclimation
biological_process	GO:0070838	divalent metal ion transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031357	integral component of chloroplast inner membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU107509	cucumber EST collection version 3.0	transcribed_cluster
CU151635	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G459500.1	Csa1G459500.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU107509	CU107509	transcribed_cluster
CU151635	CU151635	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008892	Cold-regulated 413 protein	PFAM	PF05562	WCOR413	coord: 64..215 score: 2.6
None	No IPR available	PANTHER	PTHR33596	FAMILY NOT NAMED	coord: 28..224 score: 1.2
None	No IPR available	PANTHER	PTHR33596:SF3	COLD-REGULATED 413 INNER MEMBRANE PROTEIN 1, CHLOROPLASTIC-RELATED	coord: 28..224 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G459500	Cla019615	Watermelon (97103) v1	cuwmB009
Csa1G459500	MELO3C002708	Melon (DHL92) v3.5.1	cumeB016
Csa1G459500	ClCG03G007160	Watermelon (Charleston Gray)	cuwcgB036
Csa1G459500	Lsi02G008590	Bottle gourd (USVL1VR-Ls)	culsiB031
Csa1G459500	MELO3C002708.2	Melon (DHL92) v3.6.1	cumedB011
Csa1G459500	Cla97C03G058400	Watermelon (97103) v2	cuwmbB033
Csa1G459500	Bhi08G001729	Wax gourd	cuwgoB029
Csa1G459500	CSPI01G21500	Wild cucumber (PI 183967)	cpicuB001
Csa1G459500	Cucsa.212500	Cucumber (Gy14) v1	cgycuB315
Csa1G459500	CmaCh18G004530	Cucurbita maxima (Rimu)	cmacuB398
Csa1G459500	CmoCh18G004280	Cucurbita moschata (Rifu)	cmocuB386
Csa1G459500	Cp4.1LG09g07790	Cucurbita pepo (Zucchini)	cpecuB019
Csa1G459500	CsGy1G021210	Cucumber (Gy14) v2	cgybcuB002
Csa1G459500	Carg14549	Silver-seed gourd	carcuB0162

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G459500	Cucurbita moschata (Rifu)	cmocuB190
Csa1G459500	Cucurbita moschata (Rifu)	cmocuB638
Csa1G459500	Cucurbita moschata (Rifu)	cmocuB834
Csa1G459500	Melon (DHL92) v3.5.1	cumeB080
Csa1G459500	Watermelon (Charleston Gray)	cuwcgB025
Csa1G459500	Watermelon (97103) v1	cuwmB052
Csa1G459500	Cucurbita pepo (Zucchini)	cpecuB054
Csa1G459500	Cucurbita pepo (Zucchini)	cpecuB475
Csa1G459500	Cucurbita pepo (Zucchini)	cpecuB514
Csa1G459500	Bottle gourd (USVL1VR-Ls)	culsiB004
Csa1G459500	Bottle gourd (USVL1VR-Ls)	culsiB017
Csa1G459500	Cucumber (Gy14) v2	cgybcuB242
Csa1G459500	Melon (DHL92) v3.6.1	cumedB075
Csa1G459500	Silver-seed gourd	carcuB0576
Csa1G459500	Silver-seed gourd	carcuB0815
Csa1G459500	Silver-seed gourd	carcuB0971
Csa1G459500	Watermelon (97103) v2	cuwmbB012
Csa1G459500	Watermelon (97103) v2	cuwmbB031
Csa1G459500	Wax gourd	cuwgoB020
Csa1G459500	Wax gourd	cuwgoB024
Csa1G459500	Cucumber (Chinese Long) v2	cucuB038
Csa1G459500	Cucumber (Gy14) v1	cgycuB017
Csa1G459500	Cucurbita maxima (Rimu)	cmacuB205
Csa1G459500	Cucurbita maxima (Rimu)	cmacuB650
Csa1G459500	Cucurbita maxima (Rimu)	cmacuB847