Csa1G435770 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G435770
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Epoxide hydrolase
Location	Chr1 : 16026053 .. 16027008 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACCCCTTCCCCATGGCCACGACGCAAAAAACTTCAGCTACCTATTCTACATCCATCGTTCATTCCCTCACTCAAATCGGTAAGCTTTTCTTCTATTTCTCCCTCCACTATATCACTTTCTCATATCTAATTGAGTGACTTAGACTTAGGTTGCATTAGGTCAACTGACGAATCGCTAATGGTGTATGTAATAGATGAAATTGAATGAGTTTTATTGCATTAAATGAACTAATGAACTAGAAGTTATGAATTTCGAAACTGGAACCTGGAGTAGCGAAAGTGGATTTTGGATCTAGAAATTCCTGACGATGAGAGATCCCAAGCCCTGCGAATATACCTAACGGATTCACAAATTCGAATTCGAATTCTATGCTACGTTATGGATGATTTAGAAATCGATTTTATGTGTGTTTATTGATTGATTGTATCGTAGAACTTGGAAGCTCACTAGGCCATGGAGCATAGCCCAGATCAAAGTTCTGACGAAATTTATAGTGGAGGATTTGGATTTTGGTGTAACAACTTTCCAGTTGCGAAGGAGTACATTCATGATGGCGGGTTCAAGAAGGGTGTACCGCTTCTGGAAGATGTAGTGGTGATAGAAGGAGCAACTCACTTCATTAACCAAGAAAAGGCTGGTGAAATAAGTTCTCTCATCTATGATTTCATCACCAAATTCTGAGTTTGTTAGTATTCATCTGCTTATCCTTTCCATTATCATATCATATGTTACTAGATCTTCTTCGTCTTCTTCTTTTCCATTTTCAGCCAGTTTGTGGGTATTTTGCCGAAGGAAAATGTACTAAATGAATCACTTTCGTTAGAAGAGCGGGTCATCTAGTGTGATGTTTACTGAACAAAACCCAATAATGGAAAGATGATTGCATTGGTGGGTTTAGGCCTCATTAGCCTCCAAATCGAATCAAATTGTGCAATCAATATTTTGACATATTAA

mRNA sequence

ATGGAGCATAGCCCAGATCAAAGTTCTGACGAAATTTATAGTGGAGGATTTGGATTTTGGTGTAACAACTTTCCAGTTGCGAAGGAGTACATTCATGATGGCGGGTTCAAGAAGGGTGTACCGCTTCTGGAAGATGTAGTGGTGATAGAAGGAGCAACTCACTTCATTAACCAAGAAAAGGCTGGTGAAATAAGTTCTCTCATCTATGATTTCATCACCAAATTCTGA

Coding sequence (CDS)

ATGGAGCATAGCCCAGATCAAAGTTCTGACGAAATTTATAGTGGAGGATTTGGATTTTGGTGTAACAACTTTCCAGTTGCGAAGGAGTACATTCATGATGGCGGGTTCAAGAAGGGTGTACCGCTTCTGGAAGATGTAGTGGTGATAGAAGGAGCAACTCACTTCATTAACCAAGAAAAGGCTGGTGAAATAAGTTCTCTCATCTATGATTTCATCACCAAATTCTGA

Protein sequence

MEHSPDQSSDEIYSGGFGFWCNNFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF*

Homology

[Close]

BLAST of Csa1G435770 vs. TrEMBL
Match: A0A0A0LXK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G435770 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 7.5e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MEHSPDQSSDEIYSGGFGFWCNNFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEK 60
          MEHSPDQSSDEIYSGGFGFWCNNFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEK
Sbjct: 1  MEHSPDQSSDEIYSGGFGFWCNNFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEK 60

Query: 61 AGEISSLIYDFITKF 76
          AGEISSLIYDFITKF
Sbjct: 61 AGEISSLIYDFITKF 75

[Close]

BLAST of Csa1G435770 vs. TrEMBL
Match: A0A0A0KWK9_CUCSA (Epoxide hydrolase 2 OS=Cucumis sativus GN=Csa_4G001890 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 8.9e-14
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           +FP AKEYIH   FK+ VP LE+VVVIEGA HFINQEKA EI+SLIYDFITKF
Sbjct: 263 HFPGAKEYIHGDSFKEDVPHLEEVVVIEGAAHFINQEKADEINSLIYDFITKF 315

[Close]

BLAST of Csa1G435770 vs. TrEMBL
Match: M1C5H2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401023438 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.6e-13
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           + P AKEYIH+GGFKK VPLLE+VVV+EGA HF+NQE+  EIS  IYDFI KF
Sbjct: 269 HIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVNQERPNEISKHIYDFIQKF 321

[Close]

BLAST of Csa1G435770 vs. TrEMBL
Match: Q41414_SOLTU (Epoxide hydrolase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-13
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           + P AKEYIH+GGFKK VPLLE+VVV+EGA HF+NQE+  EIS  IYDFI KF
Sbjct: 269 HIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVNQERPHEISKHIYDFIQKF 321

[Close]

BLAST of Csa1G435770 vs. TrEMBL
Match: A0A0V0HSH5_SOLCH (Putative epoxide hydrolase-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-13
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           + P AKEYIH+GGFKK VPLLE+VVV+EGA HF+NQE+  EIS  IYDFI KF
Sbjct: 269 HIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVNQERPHEISKHIYDFIQKF 321

[Close]

BLAST of Csa1G435770 vs. TAIR10
Match: AT4G02340.1 (AT4G02340.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-12
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           N P  KEYIH+GG KK VP L++VVV+EG  HF++QEK  E++  IY F  KF
Sbjct: 264 NIPGTKEYIHEGGLKKHVPFLQEVVVMEGVGHFLHQEKPDEVTDHIYGFFKKF 316

[Close]

BLAST of Csa1G435770 vs. TAIR10
Match: AT2G26740.1 (AT2G26740.1 soluble epoxide hydrolase)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 32/51 (62.75%), Postives = 35/51 (68.63%), Query Frame = 1


Query: 25  PVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           P  KEYIH   FK+ VPLLE+ VV+EG  HFINQEK  EI  +I DFI+KF
Sbjct: 271 PGVKEYIHGPQFKEDVPLLEEPVVMEGVAHFINQEKPQEILQIILDFISKF 321

[Close]

BLAST of Csa1G435770 vs. TAIR10
Match: AT3G05600.1 (AT3G05600.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 29/50 (58.00%), Postives = 34/50 (68.00%), Query Frame = 1


Query: 25  PVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITK 75
           P  KEYIH GGF   VP L+++VVIE A HF+NQEK  E+++ I DF TK
Sbjct: 274 PGMKEYIHGGGFAADVPTLQEIVVIEDAGHFVNQEKPQEVTAHINDFFTK 323

[Close]

BLAST of Csa1G435770 vs. TAIR10
Match: AT2G26750.1 (AT2G26750.1 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 29/51 (56.86%), Postives = 34/51 (66.67%), Query Frame = 1


Query: 25  PVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           P  KEYIH   FK+ VPL+E+ VV+EG  HF+NQEK  EI  +I DFI+ F
Sbjct: 270 PGVKEYIHGPQFKEDVPLIEEPVVMEGVAHFLNQEKPQEILQIILDFISTF 320

[Close]

BLAST of Csa1G435770 vs. TAIR10
Match: AT4G15955.3 (AT4G15955.3 alpha/beta-Hydrolases superfamily protein)

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-10
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           + P +K+YIHDG FK  VPLL++VVVI+G  HFI++E+  EIS  I+D+   F
Sbjct: 252 HIPGSKKYIHDGRFKSHVPLLDEVVVIKGVGHFIHEERPDEISKHIHDYFLTF 304

[Close]

BLAST of Csa1G435770 vs. NCBI nr
Match: gi|700210436|gb|KGN65532.1| (hypothetical protein Csa_1G435770 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1


Query: 1  MEHSPDQSSDEIYSGGFGFWCNNFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEK 60
          MEHSPDQSSDEIYSGGFGFWCNNFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEK
Sbjct: 1  MEHSPDQSSDEIYSGGFGFWCNNFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEK 60

Query: 61 AGEISSLIYDFITKF 76
          AGEISSLIYDFITKF
Sbjct: 61 AGEISSLIYDFITKF 75

[Close]

BLAST of Csa1G435770 vs. NCBI nr
Match: gi|659108671|ref|XP_008454327.1| (PREDICTED: bifunctional epoxide hydrolase 2-like [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-17
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           NFP AKEYIH GGFKK VPLLEDVVVIEGA HFINQEK  EISSLIYDFITKF
Sbjct: 263 NFPGAKEYIHGGGFKKDVPLLEDVVVIEGAAHFINQEKPDEISSLIYDFITKF 315

[Close]

BLAST of Csa1G435770 vs. NCBI nr
Match: gi|449469070|ref|XP_004152244.1| (PREDICTED: bifunctional epoxide hydrolase 2-like [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 41/53 (77.36%), Postives = 45/53 (84.91%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           +FP AKEYIH   FK+ VP LE+VVVIEGA HFINQEKA EI+SLIYDFITKF
Sbjct: 263 HFPGAKEYIHGDSFKEDVPHLEEVVVIEGAAHFINQEKADEINSLIYDFITKF 315

[Close]

BLAST of Csa1G435770 vs. NCBI nr
Match: gi|568214599|ref|NP_001274907.1| (epoxide hydrolase [Solanum tuberosum])

HSP 1 Score: 81.6 bits (200), Expect = 6.3e-13
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           + P AKEYIH+GGFKK VPLLE+VVV+EGA HF+NQE+  EIS  IYDFI KF
Sbjct: 269 HIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVNQERPHEISKHIYDFIQKF 321

[Close]

BLAST of Csa1G435770 vs. NCBI nr
Match: gi|1018192090|pdb|4UHB|A (Chain A, Laboratory Evolved Variant R-c1 Of Potato Epoxide Hydrolase Steh1)

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 37/53 (69.81%), Postives = 44/53 (83.02%), Query Frame = 1


Query: 23  NFPVAKEYIHDGGFKKGVPLLEDVVVIEGATHFINQEKAGEISSLIYDFITKF 76
           + P AKEYIH+GGFKK VPLLE+VVV+EGA HF++QE+  EIS  IYDFI KF
Sbjct: 269 HIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQERPHEISKHIYDFIQKF 321

The following BLAST results are available for this feature:

BLAST of Csa1G435770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXK0_CUCSA	7.5e-37	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G435770 PE=4 SV=1	[more]
A0A0A0KWK9_CUCSA	8.9e-14	77.36	Epoxide hydrolase 2 OS=Cucumis sativus GN=Csa_4G001890 PE=4 SV=1	[more]
M1C5H2_SOLTU	2.6e-13	71.70	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401023438 PE=4 SV=1	[more]
Q41414_SOLTU	4.4e-13	71.70	Epoxide hydrolase OS=Solanum tuberosum PE=2 SV=1	[more]
A0A0V0HSH5_SOLCH	4.4e-13	71.70	Putative epoxide hydrolase-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Csa1G435770 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G02340.1	3.3e-12	56.60	alpha/beta-Hydrolases superfamily protein	[more]
AT2G26740.1	1.3e-11	62.75	soluble epoxide hydrolase	[more]
AT3G05600.1	1.1e-10	58.00	alpha/beta-Hydrolases superfamily protein	[more]
AT2G26750.1	1.8e-10	56.86	alpha/beta-Hydrolases superfamily protein	[more]
AT4G15955.3	1.8e-10	52.83	alpha/beta-Hydrolases superfamily protein	[more]

BLAST of Csa1G435770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210436\|gb\|KGN65532.1\|	1.1e-36	100.00	hypothetical protein Csa_1G435770 [Cucumis sativus]	[more]
gi\|659108671\|ref\|XP_008454327.1\|	3.2e-17	88.68	PREDICTED: bifunctional epoxide hydrolase 2-like [Cucumis melo]	[more]
gi\|449469070\|ref\|XP_004152244.1\|	1.3e-13	77.36	PREDICTED: bifunctional epoxide hydrolase 2-like [Cucumis sativus]	[more]
gi\|568214599\|ref\|NP_001274907.1\|	6.3e-13	71.70	epoxide hydrolase [Solanum tuberosum]	[more]
gi\|1018192090\|pdb\|4UHB\|A	2.4e-12	69.81	Chain A, Laboratory Evolved Variant R-c1 Of Potato Epoxide Hydrolase Steh1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0018108	peptidyl-tyrosine phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033961	cis-stilbene-oxide hydrolase activity
molecular_function	GO:0004715	non-membrane spanning protein tyrosine kinase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU130098	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G435770.1	Csa1G435770.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU130098	CU130098	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10992	ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN	coord: 29..74 score: 1.8
None	No IPR available	PANTHER	PTHR10992:SF839	SUBFAMILY NOT NAMED	coord: 29..74 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G435770	CSPI01G21070	Wild cucumber (PI 183967)	cpicuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G435770	Cucurbita maxima (Rimu)	cmacuB205
Csa1G435770	Cucurbita maxima (Rimu)	cmacuB398
Csa1G435770	Cucurbita maxima (Rimu)	cmacuB650
Csa1G435770	Cucurbita maxima (Rimu)	cmacuB847
Csa1G435770	Cucurbita moschata (Rifu)	cmocuB190
Csa1G435770	Cucurbita moschata (Rifu)	cmocuB386
Csa1G435770	Cucurbita moschata (Rifu)	cmocuB638
Csa1G435770	Cucurbita moschata (Rifu)	cmocuB834
Csa1G435770	Melon (DHL92) v3.5.1	cumeB016
Csa1G435770	Melon (DHL92) v3.5.1	cumeB080
Csa1G435770	Watermelon (Charleston Gray)	cuwcgB025
Csa1G435770	Watermelon (Charleston Gray)	cuwcgB036
Csa1G435770	Watermelon (97103) v1	cuwmB009
Csa1G435770	Watermelon (97103) v1	cuwmB052
Csa1G435770	Cucurbita pepo (Zucchini)	cpecuB019
Csa1G435770	Cucurbita pepo (Zucchini)	cpecuB054
Csa1G435770	Cucurbita pepo (Zucchini)	cpecuB475
Csa1G435770	Cucurbita pepo (Zucchini)	cpecuB514
Csa1G435770	Bottle gourd (USVL1VR-Ls)	culsiB017
Csa1G435770	Bottle gourd (USVL1VR-Ls)	culsiB031
Csa1G435770	Cucumber (Gy14) v2	cgybcuB002
Csa1G435770	Cucumber (Gy14) v2	cgybcuB242
Csa1G435770	Melon (DHL92) v3.6.1	cumedB011
Csa1G435770	Melon (DHL92) v3.6.1	cumedB075
Csa1G435770	Silver-seed gourd	carcuB0454
Csa1G435770	Silver-seed gourd	carcuB0815
Csa1G435770	Watermelon (97103) v2	cuwmbB012
Csa1G435770	Watermelon (97103) v2	cuwmbB033
Csa1G435770	Wax gourd	cuwgoB024
Csa1G435770	Wax gourd	cuwgoB029
Csa1G435770	Cucumber (Chinese Long) v2	cucuB038
Csa1G435770	Cucumber (Gy14) v1	cgycuB017
Csa1G435770	Cucumber (Gy14) v1	cgycuB039