Csa1G434700 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G434700
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 15960618 .. 15961091 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATAGGAAGAAGAAGAAAAGACTACTACGGATCCGAACCTTGTGGCTCCCTGATTTTGAGTGGTCCAAGGGCAAGAGGCCGCTCTTGCAGTAGCTGTTCGTGTTGACTAAGTTCTTGTCCCGCTAGTTCTTGTTCCTGTAGCTCTCAGTTCTTGTTGGAGAAGTACTTGTGTCCTTGCGGGAATGAGAAAGGTCTCTTGACTTGATCAAAGATTTCCAACCCACTATATTCACTCAATTCTTGGTACCCGGCCAGAGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

mRNA sequence

ATGAATAGGAAGAAGAAGAAAAGACTACTACGGATCCGAACCTTGTGGCTCCCTGATTTTGAGTGGTCCAAGGGCAAGAGGCCGCTCTTGCAGTCTCTTGACTTGATCAAAGATTTCCAACCCACTATATTCACTCAATTCTTGGTACCCGGCCAGAGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

Coding sequence (CDS)

ATGAATAGGAAGAAGAAGAAAAGACTACTACGGATCCGAACCTTGTGGCTCCCTGATTTTGAGTGGTCCAAGGGCAAGAGGCCGCTCTTGCAGTCTCTTGACTTGATCAAAGATTTCCAACCCACTATATTCACTCAATTCTTGGTACCCGGCCAGAGCCTACCACCCAGTGGGAGTCAGCAAGTAGCTCATATTTCACACTTCAATAAGAAGACGCACAAACCATCAGTCGGCGCCATTAGAAGCTGCCTCAGTCCACGTAGCCGTTCTTCTCCTTCCTGTATCCGGGTTTCAGCAGTTGGGGAAGTTGCCGTACCTGTTTCAGTCGCTGAGGCTCAACCTATTCTCCTATCTTTCTGCTCATTCTTCTAG

Protein sequence

MNRKKKKRLLRIRTLWLPDFEWSKGKRPLLQSLDLIKDFQPTIFTQFLVPGQSLPPSGSQQVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFCSFF*
Homology
[Close]
BLAST of Csa1G434700 vs. TrEMBL
Match: A0A0A0LXJ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434700 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

Query: 1   MNRKKKKRLLRIRTLWLPDFEWSKGKRPLLQSLDLIKDFQPTIFTQFLVPGQSLPPSGSQ 60
           MNRKKKKRLLRIRTLWLPDFEWSKGKRPLLQSLDLIKDFQPTIFTQFLVPGQSLPPSGSQ
Sbjct: 1   MNRKKKKRLLRIRTLWLPDFEWSKGKRPLLQSLDLIKDFQPTIFTQFLVPGQSLPPSGSQ 60

Query: 61  QVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFC 120
           QVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFC
Sbjct: 61  QVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFC 120

Query: 121 SFF 124
           SFF
Sbjct: 121 SFF 123

[Close]
BLAST of Csa1G434700 vs. NCBI nr
Match: gi|700210426|gb|KGN65522.1| (hypothetical protein Csa_1G434700 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 2.9e-63
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1 

Query: 1   MNRKKKKRLLRIRTLWLPDFEWSKGKRPLLQSLDLIKDFQPTIFTQFLVPGQSLPPSGSQ 60
           MNRKKKKRLLRIRTLWLPDFEWSKGKRPLLQSLDLIKDFQPTIFTQFLVPGQSLPPSGSQ
Sbjct: 1   MNRKKKKRLLRIRTLWLPDFEWSKGKRPLLQSLDLIKDFQPTIFTQFLVPGQSLPPSGSQ 60

Query: 61  QVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFC 120
           QVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFC
Sbjct: 61  QVAHISHFNKKTHKPSVGAIRSCLSPRSRSSPSCIRVSAVGEVAVPVSVAEAQPILLSFC 120

Query: 121 SFF 124
           SFF
Sbjct: 121 SFF 123

The following BLAST results are available for this feature:
BLAST of Csa1G434700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXJ3_CUCSA2.0e-63100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434700 PE=4 SV=1[more]
BLAST of Csa1G434700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210426|gb|KGN65522.1|2.9e-63100.00hypothetical protein Csa_1G434700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103566cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G434700.1Csa1G434700.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103566CU103566transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G434700CsGy1G020710Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G434700Cucumber (Gy14) v1cgycuB039