Csa1G425930 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G425930
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 15716342 .. 15717128 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGGAGTTAAGTGGAGTTGGGATGGGGACTATGGGGCTGGAAAGGTAGAATTTCATATTGGGTTCCGATGGCACCACCATAATGGCAGTAAAGTGCTTAACACGAGGGCAAAAATTTGTCTTAGGAAGATTGTTGGTGGTATGATTTGTTTTGTGCACAGGTTTTTTTCAAAAGAGCAGAAGAGGAAAGGTGAAGAGAGAAGTAATTTGGACTGGATGAAGGAAGAAAATGCGTATGAGTGTATCTGATTGTGAAAGAGAGAATAAGTTTGTCACCGAAGAGGCTGAAAGAGAAAGATGAGAAGACTTGTTCCGAGTGTAAATCAAAAGACGATGCATGGGATAAGTCAACAGTAGAGAGAGGTTATTGTTTGGGCAGAAAAATAGATGATAGTGAAAGCTGGTTGGAATCTTTAATTAGAAAGATGAATTTCAAACCTTCTTTTTCATTCCCTTGAGGGATGATGACTTTTTTAAGGCTCTATTAATGGCAAGCTTAACAACTTCTACACAATGTCCTTTCCGGTAGGTAAACTTTTTCAACTCATAGGTCGTATTCATCAAGACAACATTTTTGGAAGAACTTTTGGTGAACGGGGTTGTCAATCAATGCGACATAAACAAGGGCTATCCAACAACAAAACTCCTTCTGAGATGGACTGAAAGATCTCTCTTTCCAATCTTCATGATGCACAAGCCATGGTCAAGTTCAATGGAGAAGATCTTTTTTGTCGATAGTGAAGGACGGAAGTCGAGAGGAAAAAAGGGCGAGACATGTCATTGA

mRNA sequence

ATGAGGGGAGTTAAGTGGAGTTGGGATGGGGACTATGGGGCTGGAAAGGTAGAATTTCATATTGGGTTCCGATGGCACCACCATAATGGCAGTAAAGTGCTTAACACGAGGGCAAAAATTTGTCTTAGGAAGATTGTTGGTGAGAGAATAAGTTTGTCACCGAAGAGGCTGAAAGAGAAAGATGAGAAGACTTGTTCCGAGTGTAAATCAAAAGACGATGCATGGGATAAGTCAACAGTCGTATTCATCAAGACAACATTTTTGGAAGAACTTTTGGTGAACGGGGTTGTCAATCAATGCGACATAAACAAGGGCTATCCAACAACAAAACTCCTTCTGAGATGGACTGAAAGATCTCTCTTTCCAATCTTCATGATGCACAAGCCATGGTCAAGTTCAATGGAGAAGATCTTTTTTGTCGATAGTGAAGGACGGAAGTCGAGAGGAAAAAAGGGCGAGACATGTCATTGA

Coding sequence (CDS)

ATGAGGGGAGTTAAGTGGAGTTGGGATGGGGACTATGGGGCTGGAAAGGTAGAATTTCATATTGGGTTCCGATGGCACCACCATAATGGCAGTAAAGTGCTTAACACGAGGGCAAAAATTTGTCTTAGGAAGATTGTTGGTGAGAGAATAAGTTTGTCACCGAAGAGGCTGAAAGAGAAAGATGAGAAGACTTGTTCCGAGTGTAAATCAAAAGACGATGCATGGGATAAGTCAACAGTCGTATTCATCAAGACAACATTTTTGGAAGAACTTTTGGTGAACGGGGTTGTCAATCAATGCGACATAAACAAGGGCTATCCAACAACAAAACTCCTTCTGAGATGGACTGAAAGATCTCTCTTTCCAATCTTCATGATGCACAAGCCATGGTCAAGTTCAATGGAGAAGATCTTTTTTGTCGATAGTGAAGGACGGAAGTCGAGAGGAAAAAAGGGCGAGACATGTCATTGA

Protein sequence

MRGVKWSWDGDYGAGKVEFHIGFRWHHHNGSKVLNTRAKICLRKIVGERISLSPKRLKEKDEKTCSECKSKDDAWDKSTVVFIKTTFLEELLVNGVVNQCDINKGYPTTKLLLRWTERSLFPIFMMHKPWSSSMEKIFFVDSEGRKSRGKKGETCH*
Homology
[Close]
BLAST of Csa1G425930 vs. TrEMBL
Match: A0A0A0LWY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G425930 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.3e-88
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MRGVKWSWDGDYGAGKVEFHIGFRWHHHNGSKVLNTRAKICLRKIVGERISLSPKRLKEK 60
           MRGVKWSWDGDYGAGKVEFHIGFRWHHHNGSKVLNTRAKICLRKIVGERISLSPKRLKEK
Sbjct: 1   MRGVKWSWDGDYGAGKVEFHIGFRWHHHNGSKVLNTRAKICLRKIVGERISLSPKRLKEK 60

Query: 61  DEKTCSECKSKDDAWDKSTVVFIKTTFLEELLVNGVVNQCDINKGYPTTKLLLRWTERSL 120
           DEKTCSECKSKDDAWDKSTVVFIKTTFLEELLVNGVVNQCDINKGYPTTKLLLRWTERSL
Sbjct: 61  DEKTCSECKSKDDAWDKSTVVFIKTTFLEELLVNGVVNQCDINKGYPTTKLLLRWTERSL 120

Query: 121 FPIFMMHKPWSSSMEKIFFVDSEGRKSRGKKGETCH 157
           FPIFMMHKPWSSSMEKIFFVDSEGRKSRGKKGETCH
Sbjct: 121 FPIFMMHKPWSSSMEKIFFVDSEGRKSRGKKGETCH 156

[Close]
BLAST of Csa1G425930 vs. NCBI nr
Match: gi|700210393|gb|KGN65489.1| (hypothetical protein Csa_1G425930 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 1.9e-88
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 

Query: 1   MRGVKWSWDGDYGAGKVEFHIGFRWHHHNGSKVLNTRAKICLRKIVGERISLSPKRLKEK 60
           MRGVKWSWDGDYGAGKVEFHIGFRWHHHNGSKVLNTRAKICLRKIVGERISLSPKRLKEK
Sbjct: 1   MRGVKWSWDGDYGAGKVEFHIGFRWHHHNGSKVLNTRAKICLRKIVGERISLSPKRLKEK 60

Query: 61  DEKTCSECKSKDDAWDKSTVVFIKTTFLEELLVNGVVNQCDINKGYPTTKLLLRWTERSL 120
           DEKTCSECKSKDDAWDKSTVVFIKTTFLEELLVNGVVNQCDINKGYPTTKLLLRWTERSL
Sbjct: 61  DEKTCSECKSKDDAWDKSTVVFIKTTFLEELLVNGVVNQCDINKGYPTTKLLLRWTERSL 120

Query: 121 FPIFMMHKPWSSSMEKIFFVDSEGRKSRGKKGETCH 157
           FPIFMMHKPWSSSMEKIFFVDSEGRKSRGKKGETCH
Sbjct: 121 FPIFMMHKPWSSSMEKIFFVDSEGRKSRGKKGETCH 156

The following BLAST results are available for this feature:
BLAST of Csa1G425930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWY4_CUCSA1.3e-88100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G425930 PE=4 SV=1[more]
BLAST of Csa1G425930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210393|gb|KGN65489.1|1.9e-88100.00hypothetical protein Csa_1G425930 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G425930.1Csa1G425930.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G425930Silver-seed gourdcarcuB0619
Csa1G425930Silver-seed gourdcarcuB0803
Csa1G425930Silver-seed gourdcarcuB1008
Csa1G425930Watermelon (97103) v2cuwmbB022
Csa1G425930Watermelon (97103) v2cuwmbB065
Csa1G425930Wax gourdcuwgoB097
Csa1G425930Cucumber (Chinese Long) v2cucuB004
Csa1G425930Cucumber (Gy14) v1cgycuB093
Csa1G425930Cucumber (Gy14) v1cgycuB401
Csa1G425930Cucurbita maxima (Rimu)cmacuB058
Csa1G425930Cucurbita maxima (Rimu)cmacuB098
Csa1G425930Cucurbita maxima (Rimu)cmacuB161
Csa1G425930Cucurbita maxima (Rimu)cmacuB779
Csa1G425930Cucurbita moschata (Rifu)cmocuB049
Csa1G425930Cucurbita moschata (Rifu)cmocuB086
Csa1G425930Cucurbita moschata (Rifu)cmocuB144
Csa1G425930Cucurbita moschata (Rifu)cmocuB772
Csa1G425930Melon (DHL92) v3.5.1cumeB042
Csa1G425930Melon (DHL92) v3.5.1cumeB075
Csa1G425930Watermelon (Charleston Gray)cuwcgB010
Csa1G425930Watermelon (Charleston Gray)cuwcgB066
Csa1G425930Watermelon (97103) v1cuwmB076
Csa1G425930Watermelon (97103) v1cuwmB079
Csa1G425930Cucurbita pepo (Zucchini)cpecuB094
Csa1G425930Cucurbita pepo (Zucchini)cpecuB351
Csa1G425930Cucurbita pepo (Zucchini)cpecuB637
Csa1G425930Cucurbita pepo (Zucchini)cpecuB807
Csa1G425930Bottle gourd (USVL1VR-Ls)culsiB007
Csa1G425930Bottle gourd (USVL1VR-Ls)culsiB059
Csa1G425930Cucumber (Gy14) v2cgybcuB002
Csa1G425930Cucumber (Gy14) v2cgybcuB050
Csa1G425930Melon (DHL92) v3.6.1cumedB034
Csa1G425930Melon (DHL92) v3.6.1cumedB068