Csa1G392600 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G392600
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Histone H3; contains IPR000164 (Histone H3), IPR009072 (Histone-fold)
Location	Chr1 : 14673684 .. 14674007 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTCTTCAAGATTGGAATCTATGTTTAGTGTATGGTTGATTAGAATGAAGCATATATATTTTATTCTAAAGTTAAAATGAAGCACTAAGCTTATGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACAAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG

mRNA sequence

ATGGTTTCTTCAAGATTGGAATCTATGTTTAGTGTATGCACTAAGCTTATGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACAAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG

Coding sequence (CDS)

ATGGTTTCTTCAAGATTGGAATCTATGTTTAGTGTATGCACTAAGCTTATGATCCGGAAGCTTCCGTTTCAACGTTTAGTTCGTGAAATTGCTCAGAATTTCAAAACCGACCTGAGGTTCCAGAGCAGTGTCGTCGCGACGCTTCAGGAAGCGGTCGAAGCCTATTTGGTTGGTTTGTTTGAGGATACAAATCTTTGTGCTATTTATGCTAAGAGGATAACCATTATGCCTGAGGATATTCAATTGGCAAGGAGGATTAGAGGGGAAAGGGCTTAG

Protein sequence

MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRITIMPEDIQLARRIRGERA*

Homology

[Close]

BLAST of Csa1G392600 vs. Swiss-Prot
Match: H32_TOBAC (Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.3e-32
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 4.3e-32
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. Swiss-Prot
Match: H32_ORYSJ (Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.3e-32
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 4.3e-32
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 4.3e-32
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. TrEMBL
Match: A0A0A0LUA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G392600 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.1e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF 60
          MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF
Sbjct: 1  MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF 60

Query: 61 EDTNLCAIYAKRITIMPEDIQLARRIRGERA 92
          EDTNLCAIYAKRITIMPEDIQLARRIRGERA
Sbjct: 61 EDTNLCAIYAKRITIMPEDIQLARRIRGERA 91

[Close]

BLAST of Csa1G392600 vs. TrEMBL
Match: A0A0E0A5E1_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.6e-30
Identity = 71/87 (81.61%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 5   RLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTN 64
           RL   +   T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTN
Sbjct: 70  RLIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTN 129

Query: 65  LCAIYAKRITIMPEDIQLARRIRGERA 92
           LCAI+AKR+TIMP+DIQLARRIRGERA
Sbjct: 130 LCAIHAKRVTIMPKDIQLARRIRGERA 156

[Close]

BLAST of Csa1G392600 vs. TrEMBL
Match: A0A0E0A5E1_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.9e-26
Identity = 69/98 (70.41%), Postives = 75/98 (76.53%), Query Frame = 1


Query: 14  TKLMIR--------------------KLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVE 73
           T+L+IR                    KLPFQRLVREIAQ+FKTDLRFQSS VA LQEA E
Sbjct: 59  TELLIRKLPFQRLIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAE 118

Query: 74  AYLVGLFEDTNLCAIYAKRITIMPEDIQLARRIRGERA 92
           AYLVGLFEDTNLCAI+AKR+TIMP+DIQLARRIRGERA
Sbjct: 119 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 156

HSP 2 Score: 139.4 bits (350), Expect = 2.2e-30
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 10  FSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIY 69
           +  CT+L+IRKLPFQRLVREIAQ+FKTDLRFQSS V  LQEA EAYLVGLFEDTNLCAI+
Sbjct: 55  YQKCTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 114

Query: 70  AKRITIMPEDIQLARRIRGERA 92
           AKR+TIMP+DIQLARRIRGERA
Sbjct: 115 AKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. TrEMBL
Match: U7E2D0_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0108s00230g PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-30
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 10 FSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIY 69
          F   T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+
Sbjct: 3  FKKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH 62

Query: 70 AKRITIMPEDIQLARRIRGERA 92
          AKR+TIMP+DIQLARRIRGERA
Sbjct: 63 AKRVTIMPKDIQLARRIRGERA 84

[Close]

BLAST of Csa1G392600 vs. TrEMBL
Match: V4VS74_9ROSI (Histone H3 OS=Citrus clementina GN=CICLE_v10024580mg PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-30
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQS  VATLQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSGAVATLQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. TAIR10
Match: AT1G09200.1 (AT1G09200.1 Histone superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-33
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. TAIR10
Match: AT3G27360.1 (AT3G27360.1 Histone superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-33
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. TAIR10
Match: AT5G10390.1 (AT5G10390.1 Histone superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-33
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. TAIR10
Match: AT5G10400.1 (AT5G10400.1 Histone superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-33
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. TAIR10
Match: AT5G65360.1 (AT5G65360.1 Histone superfamily protein)

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-33
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. NCBI nr
Match: gi|700210282|gb|KGN65378.1| (hypothetical protein Csa_1G392600 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 3.0e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1


Query: 1  MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF 60
          MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF
Sbjct: 1  MVSSRLESMFSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLF 60

Query: 61 EDTNLCAIYAKRITIMPEDIQLARRIRGERA 92
          EDTNLCAIYAKRITIMPEDIQLARRIRGERA
Sbjct: 61 EDTNLCAIYAKRITIMPEDIQLARRIRGERA 91

[Close]

BLAST of Csa1G392600 vs. NCBI nr
Match: gi|195365592|ref|XP_002045660.1| (GM18832 [Drosophila sechellia])

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-30
Identity = 69/82 (84.15%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 10  FSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIY 69
           +  CT+L+IRKLPFQRLVREIAQ+FKTDLRFQSS V  LQEA EAYLVGLFEDTNLCAI+
Sbjct: 55  YQKCTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 114

Query: 70  AKRITIMPEDIQLARRIRGERA 92
           AKR+TIMP+DIQLARRIRGERA
Sbjct: 115 AKRVTIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. NCBI nr
Match: gi|566258292|ref|XP_006388737.1| (hypothetical protein POPTR_0108s00230g, partial [Populus trichocarpa])

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-30
Identity = 70/82 (85.37%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 10 FSVCTKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIY 69
          F   T+L+IRKLPFQRLVREIAQ+FKTDLRFQSS VA LQEA EAYLVGLFEDTNLCAI+
Sbjct: 3  FKKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH 62

Query: 70 AKRITIMPEDIQLARRIRGERA 92
          AKR+TIMP+DIQLARRIRGERA
Sbjct: 63 AKRVTIMPKDIQLARRIRGERA 84

[Close]

BLAST of Csa1G392600 vs. NCBI nr
Match: gi|166384|gb|AAA32655.1| (histone H3 (H3-1.1) [Medicago sativa])

HSP 1 Score: 138.7 bits (348), Expect = 5.3e-30
Identity = 69/78 (88.46%), Postives = 76/78 (97.44%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQSSVV+ LQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSSVVSALQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

[Close]

BLAST of Csa1G392600 vs. NCBI nr
Match: gi|567900422|ref|XP_006442699.1| (hypothetical protein CICLE_v10024580mg [Citrus clementina])

HSP 1 Score: 138.7 bits (348), Expect = 5.3e-30
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = 1


Query: 14  TKLMIRKLPFQRLVREIAQNFKTDLRFQSSVVATLQEAVEAYLVGLFEDTNLCAIYAKRI 73
           T+L+IRKLPFQRLVREIAQ+FKTDLRFQS  VATLQEA EAYLVGLFEDTNLCAI+AKR+
Sbjct: 59  TELLIRKLPFQRLVREIAQDFKTDLRFQSGAVATLQEAAEAYLVGLFEDTNLCAIHAKRV 118

Query: 74  TIMPEDIQLARRIRGERA 92
           TIMP+DIQLARRIRGERA
Sbjct: 119 TIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of Csa1G392600 vs. Swiss-Prot


Match Name	E-value	Identity	Description
H32_TOBAC	4.3e-32	88.46	Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1	[more]
H32_PETCR	4.3e-32	88.46	Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2	[more]
H32_ORYSJ	4.3e-32	88.46	Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=3 SV=1	[more]
H32_ORYSI	4.3e-32	88.46	Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1	[more]
H32_ENCAL	4.3e-32	88.46	Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2	[more]

BLAST of Csa1G392600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LUA6_CUCSA	2.1e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G392600 PE=3 SV=1	[more]
A0A0E0A5E1_9ORYZ	1.6e-30	81.61	Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1	[more]
A0A0E0A5E1_9ORYZ	1.9e-26	70.41	Uncharacterized protein OS=Oryza glumipatula PE=3 SV=1	[more]
U7E2D0_POPTR	2.2e-30	85.37	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0108s00230g P...	[more]
V4VS74_9ROSI	3.7e-30	88.46	Histone H3 OS=Citrus clementina GN=CICLE_v10024580mg PE=3 SV=1	[more]

BLAST of Csa1G392600 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09200.1	2.4e-33	88.46	Histone superfamily protein	[more]
AT3G27360.1	2.4e-33	88.46	Histone superfamily protein	[more]
AT5G10390.1	2.4e-33	88.46	Histone superfamily protein	[more]
AT5G10400.1	2.4e-33	88.46	Histone superfamily protein	[more]
AT5G65360.1	2.4e-33	88.46	Histone superfamily protein	[more]

BLAST of Csa1G392600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210282\|gb\|KGN65378.1\|	3.0e-41	100.00	hypothetical protein Csa_1G392600 [Cucumis sativus]	[more]
gi\|195365592\|ref\|XP_002045660.1\|	3.1e-30	84.15	GM18832 [Drosophila sechellia]	[more]
gi\|566258292\|ref\|XP_006388737.1\|	3.1e-30	85.37	hypothetical protein POPTR_0108s00230g, partial [Populus trichocarpa]	[more]
gi\|166384\|gb\|AAA32655.1\|	5.3e-30	88.46	histone H3 (H3-1.1) [Medicago sativa]	[more]
gi\|567900422\|ref\|XP_006442699.1\|	5.3e-30	88.46	hypothetical protein CICLE_v10024580mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000164	Histone_H3/CENP-A
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000786	nucleosome

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0046982	protein heterodimerization activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008283	cell proliferation
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU141901	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G392600.1	Csa1G392600.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU141901	CU141901	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000164	Histone H3/CENP-A	PRINTS	PR00622	HISTONEH3	coord: 53..69 score: 1.5E-41coord: 13..30 score: 1.5E-41coord: 35..53 score: 1.5E-41coord: 69..90 score: 1.5
IPR000164	Histone H3/CENP-A	PANTHER	PTHR11426	HISTONE H3	coord: 14..91 score: 4.7
IPR000164	Histone H3/CENP-A	SMART	SM00428	h35	coord: 2..91 score: 1.5
IPR000164	Histone H3/CENP-A	PROSITE	PS00959	HISTONE_H3_2	coord: 22..30 scor
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 14..87 score: 1.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 15..91 score: 1.4
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 14..89 score: 4.51

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G392600	Melon (DHL92) v3.5.1	cumeB003
Csa1G392600	Watermelon (Charleston Gray)	cuwcgB071
Csa1G392600	Watermelon (97103) v1	cuwmB084
Csa1G392600	Cucurbita pepo (Zucchini)	cpecuB355
Csa1G392600	Cucurbita pepo (Zucchini)	cpecuB640
Csa1G392600	Bottle gourd (USVL1VR-Ls)	culsiB010
Csa1G392600	Bottle gourd (USVL1VR-Ls)	culsiB062
Csa1G392600	Cucumber (Gy14) v2	cgybcuB002
Csa1G392600	Melon (DHL92) v3.6.1	cumedB050
Csa1G392600	Melon (DHL92) v3.6.1	cumedB071
Csa1G392600	Silver-seed gourd	carcuB0039
Csa1G392600	Silver-seed gourd	carcuB0134
Csa1G392600	Silver-seed gourd	carcuB0596
Csa1G392600	Watermelon (97103) v2	cuwmbB020
Csa1G392600	Watermelon (97103) v2	cuwmbB069
Csa1G392600	Wax gourd	cuwgoB004
Csa1G392600	Wax gourd	cuwgoB098
Csa1G392600	Cucumber (Chinese Long) v2	cucuB008
Csa1G392600	Cucumber (Gy14) v1	cgycuB149
Csa1G392600	Cucumber (Gy14) v1	cgycuB333
Csa1G392600	Cucurbita maxima (Rimu)	cmacuB063
Csa1G392600	Cucurbita maxima (Rimu)	cmacuB103
Csa1G392600	Cucurbita maxima (Rimu)	cmacuB783
Csa1G392600	Cucurbita moschata (Rifu)	cmocuB053
Csa1G392600	Cucurbita moschata (Rifu)	cmocuB090