Csa1G385050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G385050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionCTV.20
LocationChr1 : 14544755 .. 14545287 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGACCTAACCATAGAACCAGAATTCGATGGACCTTCAGTCCCCGAAGTTTGCAAACAAGTATTTCCTCATGGATTCAACTTTCTTCCGGAGGACCTCTCAAAGACTAGGACATTCTATGAGTTCATCTTAGTTGATTCTAAGTCAGCTGAAATCACACATGTCCCTGATAAAAATGATCCCTCAAAGATCATTTACTCAAAGCTAAGAATTTTTCAAGTACTCACTCCATCCTATTGGAAACAGGGGATGTTCGTGGGAAAGAGATTTTCACAACCCTTCAAACCACCATCATACAATTACCGTGACTATACAAAGGCATGGTACATCATATTTTGGTTACAAGCCTACAACCATTCATGGTTTGTGACGTTTTGTAAGCAAGCTTACAAAATGCACTTTCCCCAATGGTTTCAAAACTGGTGGATGTATTTTGGACTCTTTGAGGAAATTTTCCCAGTAGAAGTTCAACGTTCATACCATCTCTTCCAACAAAGTATCTACTCGTCTCCTCTCTCAAAGACGTTTAG

mRNA sequence

ATGGTAGACCTAACCATAGAACCAGAATTCGATGGACCTTCAGTCCCCGAAGTTTGCAAACAAGTATTTCCTCATGGATTCAACTTTCTTCCGGAGGACCTCTCAAAGACTAGGACATTCTATGAGTTCATCTTAGTTGATTCTAAGTCAGCTGAAATCACACATGTCCCTGATAAAAATGATCCCTCAAAGATCATTTACTCAAAGCTAAGAATTTTTCAAGTACTCACTCCATCCTATTGGAAACAGGGGATGTTCGTGGGAAAGAGATTTTCACAACCCTTCAAACCACCATCATACAATTACCGTGACTATACAAAGGCATGGTACATCATATTTTGGTTACAAGCCTACAACCATTCATGTAGAAGTTCAACGTTCATACCATCTCTTCCAACAAAGTATCTACTCGTCTCCTCTCTCAAAGACGTTTAG

Coding sequence (CDS)

ATGGTAGACCTAACCATAGAACCAGAATTCGATGGACCTTCAGTCCCCGAAGTTTGCAAACAAGTATTTCCTCATGGATTCAACTTTCTTCCGGAGGACCTCTCAAAGACTAGGACATTCTATGAGTTCATCTTAGTTGATTCTAAGTCAGCTGAAATCACACATGTCCCTGATAAAAATGATCCCTCAAAGATCATTTACTCAAAGCTAAGAATTTTTCAAGTACTCACTCCATCCTATTGGAAACAGGGGATGTTCGTGGGAAAGAGATTTTCACAACCCTTCAAACCACCATCATACAATTACCGTGACTATACAAAGGCATGGTACATCATATTTTGGTTACAAGCCTACAACCATTCATGTAGAAGTTCAACGTTCATACCATCTCTTCCAACAAAGTATCTACTCGTCTCCTCTCTCAAAGACGTTTAG

Protein sequence

MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNHSCRSSTFIPSLPTKYLLVSSLKDV*
Homology
[Close]
BLAST of Csa1G385050 vs. TrEMBL
Match: A0A0A0LWK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 6.1e-80
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120
           DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH
Sbjct: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120

Query: 121 SCRSSTFIPSLPTKYLLVSSLKDV 145
           SCRSSTFIPSLPTKYLLVSSLKDV
Sbjct: 121 SCRSSTFIPSLPTKYLLVSSLKDV 144

[Close]
BLAST of Csa1G385050 vs. TrEMBL
Match: A0A0A0LUE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-59
Identity = 109/121 (90.08%), Postives = 116/121 (95.87%), Query Frame = 1 

Query: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60
           MVDLTIEPEFD PSV E+CKQ+FPHGFNFLPEDL+KT+TFYEFILVDSKSAEITHVP KN
Sbjct: 1   MVDLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKN 60

Query: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120
           DP KIIYSKLRIF+VLTPSYWKQGMFVGKRFSQPFK PSYNYRDYTKAWYI+FWLQA+NH
Sbjct: 61  DPLKIIYSKLRIFRVLTPSYWKQGMFVGKRFSQPFKSPSYNYRDYTKAWYIVFWLQAHNH 120

Query: 121 S 122
           S
Sbjct: 121 S 121

[Close]
BLAST of Csa1G385050 vs. TrEMBL
Match: F6GZH2_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VIT_00s2213g00010 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.4e-29
Identity = 63/116 (54.31%), Postives = 79/116 (68.10%), Query Frame = 1 

Query: 6   IEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDPSKI 65
           IEPEF+   +P++   +FP G NF   D  KTR FYEFILVD+ S EITH  DKN+P +I
Sbjct: 4   IEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPQRI 63

Query: 66  IYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNHS 122
            +SK +I +V+T + W Q  F  K FSQPF P SYNY DY  AWY +F+LQ+Y HS
Sbjct: 64  AFSKCQILRVMTIADWNQKPFTCKAFSQPFHPMSYNYMDYMDAWYNMFYLQSYQHS 119

[Close]
BLAST of Csa1G385050 vs. TrEMBL
Match: A5BG67_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010890 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-28
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 1 

Query: 6   IEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDPSKI 65
           IEPEF+   +P++   +FP G NF   D  KTR FYEFILVD+ S EITH  DKN+P  I
Sbjct: 101 IEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPQXI 160

Query: 66  IYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNHS 122
            +SK +I +V+T + W Q  F  K FSQPF P SYNY DY  AWY +F+LQ+Y HS
Sbjct: 161 AFSKCQILRVMTIADWNQKPFTCKAFSQPFHPMSYNYIDYMNAWYNMFYLQSYQHS 216

[Close]
BLAST of Csa1G385050 vs. TrEMBL
Match: F6H9U7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00640 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.4e-28
Identity = 62/116 (53.45%), Postives = 78/116 (67.24%), Query Frame = 1 

Query: 6   IEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDPSKI 65
           IEPEF+   +P++   +FP G NF   D  KTR FYEFIL D+ S EITH  DKN+P +I
Sbjct: 114 IEPEFNFEEIPKILPYIFPPGVNFNSNDPLKTRQFYEFILADTDSVEITHNTDKNNPQRI 173

Query: 66  IYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNHS 122
            +SK +I +V+T + W Q  F  K FSQPF P SYNY DY  AWY +F+LQ+Y HS
Sbjct: 174 AFSKCQILRVMTIADWNQKPFTCKAFSQPFHPMSYNYLDYMDAWYNMFYLQSYQHS 229

[Close]
BLAST of Csa1G385050 vs. NCBI nr
Match: gi|700210273|gb|KGN65369.1| (hypothetical protein Csa_1G385050 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 8.8e-80
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1 

Query: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60
           MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN
Sbjct: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60

Query: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120
           DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH
Sbjct: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120

Query: 121 SCRSSTFIPSLPTKYLLVSSLKDV 145
           SCRSSTFIPSLPTKYLLVSSLKDV
Sbjct: 121 SCRSSTFIPSLPTKYLLVSSLKDV 144

[Close]
BLAST of Csa1G385050 vs. NCBI nr
Match: gi|700210424|gb|KGN65520.1| (hypothetical protein Csa_1G434180 [Cucumis sativus])

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 109/121 (90.08%), Postives = 116/121 (95.87%), Query Frame = 1 

Query: 1   MVDLTIEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKN 60
           MVDLTIEPEFD PSV E+CKQ+FPHGFNFLPEDL+KT+TFYEFILVDSKSAEITHVP KN
Sbjct: 1   MVDLTIEPEFDRPSVFELCKQIFPHGFNFLPEDLAKTKTFYEFILVDSKSAEITHVPYKN 60

Query: 61  DPSKIIYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNH 120
           DP KIIYSKLRIF+VLTPSYWKQGMFVGKRFSQPFK PSYNYRDYTKAWYI+FWLQA+NH
Sbjct: 61  DPLKIIYSKLRIFRVLTPSYWKQGMFVGKRFSQPFKSPSYNYRDYTKAWYIVFWLQAHNH 120

Query: 121 S 122
           S
Sbjct: 121 S 121

[Close]
BLAST of Csa1G385050 vs. NCBI nr
Match: gi|147863969|emb|CAN83211.1| (hypothetical protein VITISV_010890 [Vitis vinifera])

HSP 1 Score: 133.3 bits (334), Expect = 3.5e-28
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 1 

Query: 6   IEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDPSKI 65
           IEPEF+   +P++   +FP G NF   D  KTR FYEFILVD+ S EITH  DKN+P  I
Sbjct: 101 IEPEFNFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPQXI 160

Query: 66  IYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNHS 122
            +SK +I +V+T + W Q  F  K FSQPF P SYNY DY  AWY +F+LQ+Y HS
Sbjct: 161 AFSKCQILRVMTIADWNQKPFTCKAFSQPFHPMSYNYIDYMNAWYNMFYLQSYQHS 216

[Close]
BLAST of Csa1G385050 vs. NCBI nr
Match: gi|147806086|emb|CAN63337.1| (hypothetical protein VITISV_033711 [Vitis vinifera])

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27
Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1 

Query: 6   IEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDPSKI 65
           IEPEF    +P++   +FP G NF   D  KTR FYEFILVD+ S EITH  DKN+P +I
Sbjct: 114 IEPEFSFEEIPKILPYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPQRI 173

Query: 66  IYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQAYNHS 122
            +SK +I  V+T + W    F  K FSQPF P SYNY DY  AWY +F+LQ+Y HS
Sbjct: 174 AFSKCQILXVMTIADWNXKPFTCKAFSQPFHPMSYNYIDYIDAWYNMFYLQSYQHS 229

[Close]
BLAST of Csa1G385050 vs. NCBI nr
Match: gi|147767380|emb|CAN66723.1| (hypothetical protein VITISV_022330 [Vitis vinifera])

HSP 1 Score: 125.2 bits (313), Expect = 9.5e-26
Identity = 60/111 (54.05%), Postives = 75/111 (67.57%), Query Frame = 1 

Query: 6   IEPEFDGPSVPEVCKQVFPHGFNFLPEDLSKTRTFYEFILVDSKSAEITHVPDKNDPSKI 65
           IEPEF+   +P++   +FP G NF   D  KTR FYEFILVD+ S EITH  DKN+P +I
Sbjct: 114 IEPEFNFEEIPKILLYIFPQGVNFNSNDPLKTRQFYEFILVDTDSVEITHNTDKNNPHRI 173

Query: 66  IYSKLRIFQVLTPSYWKQGMFVGKRFSQPFKPPSYNYRDYTKAWYIIFWLQ 117
            +SK +I +V+T + W Q  F  K FSQPF P SYNY DY  AWY +F+LQ
Sbjct: 174 AFSKCQILKVMTIADWNQKPFTCKDFSQPFHPMSYNYIDYMDAWYNMFYLQ 224

The following BLAST results are available for this feature:
BLAST of Csa1G385050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWK6_CUCSA6.1e-80100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G385050 PE=4 SV=1[more]
A0A0A0LUE7_CUCSA2.0e-5990.08Uncharacterized protein OS=Cucumis sativus GN=Csa_1G434180 PE=4 SV=1[more]
F6GZH2_VITVI8.4e-2954.31Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VIT_00s2213g000... [more]
A5BG67_VITVI2.4e-2854.31Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010890 PE=4 SV=1[more]
F6H9U7_VITVI5.4e-2853.45Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g00640 PE=4 SV=... [more]
BLAST of Csa1G385050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210273|gb|KGN65369.1|8.8e-80100.00hypothetical protein Csa_1G385050 [Cucumis sativus][more]
gi|700210424|gb|KGN65520.1|2.9e-5990.08hypothetical protein Csa_1G434180 [Cucumis sativus][more]
gi|147863969|emb|CAN83211.1|3.5e-2854.31hypothetical protein VITISV_010890 [Vitis vinifera][more]
gi|147806086|emb|CAN63337.1|2.3e-2753.45hypothetical protein VITISV_033711 [Vitis vinifera][more]
gi|147767380|emb|CAN66723.1|9.5e-2654.05hypothetical protein VITISV_022330 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G385050.1Csa1G385050.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33054FAMILY NOT NAMEDcoord: 6..121
score: 5.3
NoneNo IPR availablePANTHERPTHR33054:SF3SUBFAMILY NOT NAMEDcoord: 6..121
score: 5.3