Csa1G373510 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G373510
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	CTD small phosphatase-like protein; contains IPR004274 (NLI interacting factor), IPR023214 (HAD-like domain)
Location	Chr1 : 14405034 .. 14405273 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTGTGCCTATATTTCTTCAATGTGTTTGAACGTTCTGAATTGCATGAGTTCTTGATCCAGGCTGCTGCATTTGTTGAACTTGTTTTATTTACTACTGGTTTTGAAGGTATGCCATTGATTTCTAGTATCTTTTGCAACATTTCTCATGTTATTCTATTGTTATATGTGGTTTCTTGTGGACGTACAGGTTATGCTAAACCACTGGTTGATAGAATAGATACAGGGAAGATTTAG

mRNA sequence

ATGTATGTGTGCCTATATTTCTTCAATGTGTTTGAACGTTCTGAATTGCATGAGTTCTTGATCCAGGCTGCTGCATTTGTTGAACTTGTTTTATTTACTACTGGTTTTGAAGGTTATGCTAAACCACTGGTTGATAGAATAGATACAGGGAAGATTTAG

Coding sequence (CDS)

ATGTATGTGTGCCTATATTTCTTCAATGTGTTTGAACGTTCTGAATTGCATGAGTTCTTGATCCAGGCTGCTGCATTTGTTGAACTTGTTTTATTTACTACTGGTTTTGAAGGTTATGCTAAACCACTGGTTGATAGAATAGATACAGGGAAGATTTAG

Protein sequence

MYVCLYFFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI*

Homology

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BLAST of Csa1G373510 vs. TrEMBL
Match: A0A0A0LTV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G373510 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.1e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1


Query: 1  MYVCLYFFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 53
          MYVCLYFFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI
Sbjct: 1  MYVCLYFFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 52

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BLAST of Csa1G373510 vs. TrEMBL
Match: E5GBF3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.0e-09
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDT 50
           +  VFER  LHEFL QAA F EL+LFT G EGYAKPLVDRIDT
Sbjct: 154 YVTVFERPGLHEFLSQAAEFAELILFTAGLEGYAKPLVDRIDT 196

[Close]

BLAST of Csa1G373510 vs. TrEMBL
Match: A0A0A0LDE8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731190 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.3e-08
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDT 50
           +  VFER  LHEFL QAA F +L+LFT G EGYAKPLVDRIDT
Sbjct: 154 YVTVFERPGLHEFLSQAAEFADLILFTAGLEGYAKPLVDRIDT 196

[Close]

BLAST of Csa1G373510 vs. TrEMBL
Match: D7LVA5_ARALL (NLI interacting factor family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_907030 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.1e-08
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 53
           +  VFER  LHEFL Q + F +LVLFT G EGYA+PLVDRIDT K+
Sbjct: 151 YVTVFERPGLHEFLEQLSEFADLVLFTAGLEGYARPLVDRIDTRKV 196

[Close]

BLAST of Csa1G373510 vs. TrEMBL
Match: A0A078C572_BRANA (BnaC08g26880D protein OS=Brassica napus GN=BnaC08g26880D PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.1e-08
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 53
           +  VFER  LHEFL Q + F +LVLFT G EGYA+PLVDRIDT K+
Sbjct: 142 YVTVFERPGLHEFLEQLSQFADLVLFTAGLEGYARPLVDRIDTRKV 187

[Close]

BLAST of Csa1G373510 vs. TAIR10
Match: AT3G55960.1 (AT3G55960.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein)

HSP 1 Score: 63.9 bits (154), Expect = 3.4e-11
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 53
           +  VFER  LHEFL Q + F +L+LFT G EGYA+PLVDRIDT K+
Sbjct: 152 YVTVFERPGLHEFLEQLSEFADLILFTAGLEGYARPLVDRIDTRKV 197

[Close]

BLAST of Csa1G373510 vs. NCBI nr
Match: gi|700210264|gb|KGN65360.1| (hypothetical protein Csa_1G373510 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 4.4e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1


Query: 1  MYVCLYFFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 53
          MYVCLYFFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI
Sbjct: 1  MYVCLYFFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 52

[Close]

BLAST of Csa1G373510 vs. NCBI nr
Match: gi|659083550|ref|XP_008442416.1| (PREDICTED: CTD small phosphatase-like protein 2 [Cucumis melo])

HSP 1 Score: 67.4 bits (163), Expect = 8.6e-09
Identity = 32/43 (74.42%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDT 50
           +  VFER  LHEFL QAA F EL+LFT G EGYAKPLVDRIDT
Sbjct: 154 YVTVFERPGLHEFLSQAAEFAELILFTAGLEGYAKPLVDRIDT 196

[Close]

BLAST of Csa1G373510 vs. NCBI nr
Match: gi|449439892|ref|XP_004137719.1| (PREDICTED: CTD nuclear envelope phosphatase 1 homolog [Cucumis sativus])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-08
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDT 50
           +  VFER  LHEFL QAA F +L+LFT G EGYAKPLVDRIDT
Sbjct: 154 YVTVFERPGLHEFLSQAAEFADLILFTAGLEGYAKPLVDRIDT 196

[Close]

BLAST of Csa1G373510 vs. NCBI nr
Match: gi|729324731|ref|XP_010534600.1| (PREDICTED: CTD small phosphatase-like protein [Tarenaya hassleriana])

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-08
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 53
           +  VFER  LHEFL Q + F  LVLFT G EGYA+PLVDRIDTG +
Sbjct: 158 YVTVFERPGLHEFLEQLSRFANLVLFTAGLEGYARPLVDRIDTGNL 203

[Close]

BLAST of Csa1G373510 vs. NCBI nr
Match: gi|297820342|ref|XP_002878054.1| (NLI interacting factor family protein [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 64.3 bits (155), Expect = 7.3e-08
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1


Query: 7   FFNVFERSELHEFLIQAAAFVELVLFTTGFEGYAKPLVDRIDTGKI 53
           +  VFER  LHEFL Q + F +LVLFT G EGYA+PLVDRIDT K+
Sbjct: 151 YVTVFERPGLHEFLEQLSEFADLVLFTAGLEGYARPLVDRIDTRKV 196

The following BLAST results are available for this feature:

BLAST of Csa1G373510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTV9_CUCSA	3.1e-21	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G373510 PE=4 SV=1	[more]
E5GBF3_CUCME	6.0e-09	74.42	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LDE8_CUCSA	1.3e-08	72.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731190 PE=4 SV=1	[more]
D7LVA5_ARALL	5.1e-08	65.22	NLI interacting factor family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARA...	[more]
A0A078C572_BRANA	5.1e-08	65.22	BnaC08g26880D protein OS=Brassica napus GN=BnaC08g26880D PE=4 SV=1	[more]

BLAST of Csa1G373510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55960.1	3.4e-11	63.04	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	[more]

BLAST of Csa1G373510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210264\|gb\|KGN65360.1\|	4.4e-21	100.00	hypothetical protein Csa_1G373510 [Cucumis sativus]	[more]
gi\|659083550\|ref\|XP_008442416.1\|	8.6e-09	74.42	PREDICTED: CTD small phosphatase-like protein 2 [Cucumis melo]	[more]
gi\|449439892\|ref\|XP_004137719.1\|	1.9e-08	72.09	PREDICTED: CTD nuclear envelope phosphatase 1 homolog [Cucumis sativus]	[more]
gi\|729324731\|ref\|XP_010534600.1\|	7.3e-08	65.22	PREDICTED: CTD small phosphatase-like protein [Tarenaya hassleriana]	[more]
gi\|297820342\|ref\|XP_002878054.1\|	7.3e-08	65.22	NLI interacting factor family protein [Arabidopsis lyrata subsp. lyrata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004274	FCP1_dom
IPR023214	HAD_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016791	phosphatase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G373510.1	Csa1G373510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004274	FCP1 homology domain	PFAM	PF03031	NIF	coord: 8..51 score: 4.
IPR004274	FCP1 homology domain	PROFILE	PS50969	FCP1	coord: 1..52 score: 11
IPR023214	HAD-like domain	GENE3D	G3DSA:3.40.50.1000		coord: 7..50 score: 4.
IPR023214	HAD-like domain	unknown	SSF56784	HAD-like	coord: 8..50 score: 5.0
None	No IPR available	PANTHER	PTHR12210	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	coord: 10..49 score: 9.6
None	No IPR available	PANTHER	PTHR12210:SF57	HALOACID DEHALOGENASE-LIKE HYDROLASE (HAD) SUPERFAMILY PROTEIN	coord: 10..49 score: 9.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G373510	CsGy1G019200	Cucumber (Gy14) v2	cgybcuB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G373510	Cucurbita pepo (Zucchini)	cpecuB355
Csa1G373510	Cucurbita pepo (Zucchini)	cpecuB640
Csa1G373510	Bottle gourd (USVL1VR-Ls)	culsiB062
Csa1G373510	Melon (DHL92) v3.6.1	cumedB050
Csa1G373510	Silver-seed gourd	carcuB0039
Csa1G373510	Silver-seed gourd	carcuB0134
Csa1G373510	Silver-seed gourd	carcuB0596
Csa1G373510	Watermelon (97103) v2	cuwmbB069
Csa1G373510	Wax gourd	cuwgoB004
Csa1G373510	Wax gourd	cuwgoB098
Csa1G373510	Cucumber (Gy14) v1	cgycuB149
Csa1G373510	Cucumber (Gy14) v1	cgycuB333
Csa1G373510	Cucurbita maxima (Rimu)	cmacuB063
Csa1G373510	Cucurbita maxima (Rimu)	cmacuB103
Csa1G373510	Cucurbita maxima (Rimu)	cmacuB783
Csa1G373510	Cucurbita moschata (Rifu)	cmocuB053
Csa1G373510	Cucurbita moschata (Rifu)	cmocuB090
Csa1G373510	Melon (DHL92) v3.5.1	cumeB003
Csa1G373510	Watermelon (Charleston Gray)	cuwcgB071
Csa1G373510	Watermelon (97103) v1	cuwmB084