Csa1G369490 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G369490
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	PGPS/D10
Location	Chr1 : 14280909 .. 14281509 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTCCCCGATCTGTAATTTAGAAATGGGTTTGCAAAAATGGGATCCCAGGCCAAAATGAGCATCAGAATCCCTTCCACCGCCAAAAGCGCCGGCGAAGGGGACGGCGTGTTGGGGCACTCTCACTCATGTTCATCAAAAGGCCAATGCCTCTGTTCCCCCACCACTCATCCCGGTTCCTTCCGGTGTCGGCTTCACCGTTCCAATTCCTTGCCATGGAGTAGGCAGTCCAAATCCACCGCTGCATCGGCCGACGCCTCTAACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGATTTTTCAGTTACCATCTATCGGCCGAAACAACAAATAAAGAAATCCTCTGTAAATATTTATGTACTCCTCTCGCTCTCTCTCTCTGTTCTCACTCCACTCTTAAAATTTATTACAAATCAAAGTCGGTTTATGTGTGTCTGTTTTGTTATGCTTTCATTTTAGTTTTTACTCAATTTTCTATAATTGAGATTTCAGATTTCCTTTGTTAATGTTAATGCTTCTTCTCTCTGTTTCTGCCGTTTCTCTACTTTTTTAACTCTTTTTTTTTTTAACTTTTAATTTATATATACTTTTATG

mRNA sequence

ATGGGATCCCAGGCCAAAATGAGCATCAGAATCCCTTCCACCGCCAAAAGCGCCGGCGAAGGGGACGGCGTGTTGGGGCACTCTCACTCATGTTCATCAAAAGGCCAATGCCTCTGTTCCCCCACCACTCATCCCGGTTCCTTCCGGTGTCGGCTTCACCGTTCCAATTCCTTGCCATGGAGTAGGCAGTCCAAATCCACCGCTGCATCGGCCGACGCCTCTAACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGA

Coding sequence (CDS)

ATGGGATCCCAGGCCAAAATGAGCATCAGAATCCCTTCCACCGCCAAAAGCGCCGGCGAAGGGGACGGCGTGTTGGGGCACTCTCACTCATGTTCATCAAAAGGCCAATGCCTCTGTTCCCCCACCACTCATCCCGGTTCCTTCCGGTGTCGGCTTCACCGTTCCAATTCCTTGCCATGGAGTAGGCAGTCCAAATCCACCGCTGCATCGGCCGACGCCTCTAACACCTCAGATCTCTCTCCAAAGTCAGTTGAATCTGCTTGA

Protein sequence

MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAASADASNTSDLSPKSVESA*

Homology

[Close]

BLAST of Csa1G369490 vs. TrEMBL
Match: A0A0A0LWJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G369490 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60
          MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW
Sbjct: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60

Query: 61 SRQSKSTAASADASNTSDLSPKSVESA 88
          SRQSKSTAASADASNTSDLSPKSVESA
Sbjct: 61 SRQSKSTAASADASNTSDLSPKSVESA 87

[Close]

BLAST of Csa1G369490 vs. TrEMBL
Match: B9ILL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05860g PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLH---RSNS 60
          M S  K+SI   ST+  +G G+     + S S KGQCLCSPTTH GSFRCRLH   RS++
Sbjct: 1  MASHGKLSI---STSPESGNGERSSAVASS-SPKGQCLCSPTTHQGSFRCRLHRAPRSSA 60

Query: 61 LPWSRQSKSTAASADASNTSDLSPKSVES 87
           P  ++SKS     DA   + LSPKSVES
Sbjct: 61 APMMKRSKSMPPK-DA--PTSLSPKSVES 82

[Close]

BLAST of Csa1G369490 vs. TrEMBL
Match: A0A061GNT6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_037897 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-09
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 35 GQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAASADASNTSDLSPKSVES 87
          GQCLCSPTTH GSFRCR HRS+S  W ++SKS  A+    + + LSPKSVES
Sbjct: 30 GQCLCSPTTHQGSFRCRFHRSSSSAWMKRSKSMPAN---GSLASLSPKSVES 78

[Close]

BLAST of Csa1G369490 vs. TrEMBL
Match: A0A067KPE6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07230 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-09
Identity = 42/75 (56.00%), Postives = 48/75 (64.00%), Query Frame = 1


Query: 13 STAKSAGEGDGVLGHSHSCSS-KGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAASA 72
          ST+   G G+G  G S   SS KGQCLCSPTTH GSFRCR HRS S   S +   +  + 
Sbjct: 10 STSSPKG-GNGTEGGSAILSSPKGQCLCSPTTHEGSFRCRFHRSRSAAASMKRSKSMPTN 69

Query: 73 DASNTSDLSPKSVES 87
          +A NT  LSPKSVES
Sbjct: 70 NAVNT--LSPKSVES 81

[Close]

BLAST of Csa1G369490 vs. TrEMBL
Match: A0A0A0LKU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004705 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-09
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1


Query: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60
          M S   +S+ + ++ K A      +    S S KGQCLCSPT H GSFRCRLHRS S  W
Sbjct: 1  MASDGSLSVSVSTSPKHANRDAETV---RSNSPKGQCLCSPTMHQGSFRCRLHRSTSSAW 60

Query: 61 SRQSKSTAASADASNTSDLSPK-SVESA 88
           ++SKS   +   +  + LSPK S+ES+
Sbjct: 61 MKRSKSMPTN---NPVASLSPKESLESS 82

[Close]

BLAST of Csa1G369490 vs. TAIR10
Match: AT3G13227.1 (AT3G13227.1 serine-rich protein-related)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-09
Identity = 25/46 (54.35%), Postives = 28/46 (60.87%), Query Frame = 1


Query: 12 PSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNS 58
          P   +  G G G +G S S S +  CLC+PTTHPGSFRCR HR N+
Sbjct: 40 PRVRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHRRNA 85

[Close]

BLAST of Csa1G369490 vs. TAIR10
Match: AT1G67910.1 (AT1G67910.1 unknown protein)

HSP 1 Score: 56.6 bits (135), Expect = 8.9e-09
Identity = 37/81 (45.68%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 7  MSIRIPSTAKSAGEGDGVLGHSHSCS-SKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSK 66
          M + I S   SA E  G  G S   S +K  CLCSPTTHPGSFRCR+HRS SL  ++   
Sbjct: 14 MKVEIHSHFNSAVEV-GSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQRTK--- 73

Query: 67 STAASADASNTSDLSPKSVES 87
              S +A++  D  PK  +S
Sbjct: 74 ----SIEAASLLDSPPKPADS 86

[Close]

BLAST of Csa1G369490 vs. TAIR10
Match: AT1G24577.1 (AT1G24577.1 unknown protein)

HSP 1 Score: 47.8 bits (112), Expect = 4.1e-06
Identity = 24/44 (54.55%), Postives = 27/44 (61.36%), Query Frame = 1


Query: 15 AKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSL 59
          A  A  G G L    S + K  C+CSPTTHPGSF+C+LHR+ SL
Sbjct: 11 ASIAAMGLGGLSRQTSIT-KTICICSPTTHPGSFKCKLHRTPSL 53

[Close]

BLAST of Csa1G369490 vs. TAIR10
Match: AT5G11090.1 (AT5G11090.1 serine-rich protein-related)

HSP 1 Score: 47.4 bits (111), Expect = 5.4e-06
Identity = 20/40 (50.00%), Postives = 26/40 (65.00%), Query Frame = 1


Query: 27  HSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKS 67
           H+H  S +  C+CSPTTHPGSFRC LH++ + P  + + S
Sbjct: 115 HNHKISRR--CMCSPTTHPGSFRCSLHKNVANPHGQGTAS 152

[Close]

BLAST of Csa1G369490 vs. TAIR10
Match: AT5G55980.1 (AT5G55980.1 serine-rich protein-related)

HSP 1 Score: 47.0 bits (110), Expect = 7.0e-06
Identity = 24/49 (48.98%), Postives = 28/49 (57.14%), Query Frame = 1


Query: 32  SSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAASADASNTSDLS 81
           S++  CLCSPTTH GSFRCR HR +SL  +    S  A   +S +S  S
Sbjct: 59  STRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVLLSSKSSRFS 107

[Close]

BLAST of Csa1G369490 vs. NCBI nr
Match: gi|700210258|gb|KGN65354.1| (hypothetical protein Csa_1G369490 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 2.6e-42
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60
          MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW
Sbjct: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60

Query: 61 SRQSKSTAASADASNTSDLSPKSVESA 88
          SRQSKSTAASADASNTSDLSPKSVESA
Sbjct: 61 SRQSKSTAASADASNTSDLSPKSVESA 87

[Close]

BLAST of Csa1G369490 vs. NCBI nr
Match: gi|659126818|ref|XP_008463383.1| (PREDICTED: uncharacterized protein LOC103501550 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-36
Identity = 80/87 (91.95%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 1   MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPW 60
           MGSQ KMSI IPSTAKSAG+GDGV GHS  CSSK QCLCSPTTHPGSFRCRLHRSNSLPW
Sbjct: 21  MGSQPKMSISIPSTAKSAGDGDGVAGHS--CSSKAQCLCSPTTHPGSFRCRLHRSNSLPW 80

Query: 61  SRQSKSTAASADASNTSDLSPKSVESA 88
           SRQSKSTAASADASNTSDLSPKSVESA
Sbjct: 81  SRQSKSTAASADASNTSDLSPKSVESA 105

[Close]

BLAST of Csa1G369490 vs. NCBI nr
Match: gi|719980339|ref|XP_010249766.1| (PREDICTED: uncharacterized protein LOC104592232 [Nelumbo nucifera])

HSP 1 Score: 74.7 bits (182), Expect = 8.9e-11
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 8  SIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKST 67
          +I + S+ K  G G+   G + S    GQCLCSPTTH GSFRC+ HRS S  W+R+SKS 
Sbjct: 7  TINVASSLKG-GNGESDSGPASSSKGGGQCLCSPTTHSGSFRCKFHRSLSSTWTRRSKSM 66

Query: 68 AASADASNTSDLSPKSVES 87
          + +   S+   +SPKSVES
Sbjct: 67 SGN---SSPPSISPKSVES 81

[Close]

BLAST of Csa1G369490 vs. NCBI nr
Match: gi|224142137|ref|XP_002324415.1| (hypothetical protein POPTR_0018s05860g [Populus trichocarpa])

HSP 1 Score: 69.7 bits (169), Expect = 2.9e-09
Identity = 46/89 (51.69%), Postives = 56/89 (62.92%), Query Frame = 1


Query: 1  MGSQAKMSIRIPSTAKSAGEGDGVLGHSHSCSSKGQCLCSPTTHPGSFRCRLH---RSNS 60
          M S  K+SI   ST+  +G G+     + S S KGQCLCSPTTH GSFRCRLH   RS++
Sbjct: 1  MASHGKLSI---STSPESGNGERSSAVASS-SPKGQCLCSPTTHQGSFRCRLHRAPRSSA 60

Query: 61 LPWSRQSKSTAASADASNTSDLSPKSVES 87
           P  ++SKS     DA   + LSPKSVES
Sbjct: 61 APMMKRSKSMPPK-DA--PTSLSPKSVES 82

[Close]

BLAST of Csa1G369490 vs. NCBI nr
Match: gi|590577304|ref|XP_007013198.1| (Uncharacterized protein TCM_037897 [Theobroma cacao])

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-09
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 35 GQCLCSPTTHPGSFRCRLHRSNSLPWSRQSKSTAASADASNTSDLSPKSVES 87
          GQCLCSPTTH GSFRCR HRS+S  W ++SKS  A+    + + LSPKSVES
Sbjct: 30 GQCLCSPTTHQGSFRCRFHRSSSSAWMKRSKSMPAN---GSLASLSPKSVES 78

The following BLAST results are available for this feature:

BLAST of Csa1G369490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWJ0_CUCSA	1.8e-42	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G369490 PE=4 SV=1	[more]
B9ILL5_POPTR	2.0e-09	51.69	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s05860g PE=4 SV=1	[more]
A0A061GNT6_THECC	2.6e-09	63.46	Uncharacterized protein OS=Theobroma cacao GN=TCM_037897 PE=4 SV=1	[more]
A0A067KPE6_JATCU	3.4e-09	56.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07230 PE=4 SV=1	[more]
A0A0A0LKU3_CUCSA	5.8e-09	44.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004705 PE=4 SV=1	[more]

BLAST of Csa1G369490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13227.1	1.8e-09	54.35	serine-rich protein-related	[more]
AT1G67910.1	8.9e-09	45.68	unknown protein	[more]
AT1G24577.1	4.1e-06	54.55	unknown protein	[more]
AT5G11090.1	5.4e-06	50.00	serine-rich protein-related	[more]
AT5G55980.1	7.0e-06	48.98	serine-rich protein-related	[more]

BLAST of Csa1G369490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210258\|gb\|KGN65354.1\|	2.6e-42	100.00	hypothetical protein Csa_1G369490 [Cucumis sativus]	[more]
gi\|659126818\|ref\|XP_008463383.1\|	1.6e-36	91.95	PREDICTED: uncharacterized protein LOC103501550 [Cucumis melo]	[more]
gi\|719980339\|ref\|XP_010249766.1\|	8.9e-11	49.37	PREDICTED: uncharacterized protein LOC104592232 [Nelumbo nucifera]	[more]
gi\|224142137\|ref\|XP_002324415.1\|	2.9e-09	51.69	hypothetical protein POPTR_0018s05860g [Populus trichocarpa]	[more]
gi\|590577304\|ref\|XP_007013198.1\|	3.8e-09	63.46	Uncharacterized protein TCM_037897 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU095452	cucumber EST collection version 3.0	transcribed_cluster
CU176787	cucumber EST collection version 3.0	transcribed_cluster
CU177479	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G369490.1	Csa1G369490.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU095452	CU095452	transcribed_cluster
CU176787	CU176787	transcribed_cluster
CU177479	CU177479	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33132	FAMILY NOT NAMED	coord: 32..81 score: 4.4
None	No IPR available	PANTHER	PTHR33132:SF13	SERINE-RICH PROTEIN-LIKE PROTEIN	coord: 32..81 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G369490	Cla010626	Watermelon (97103) v1	cuwmB098
Csa1G369490	MELO3C025332	Melon (DHL92) v3.5.1	cumeB003
Csa1G369490	Lsi06G008840	Bottle gourd (USVL1VR-Ls)	culsiB062
Csa1G369490	Cla97C06G118210	Watermelon (97103) v2	cuwmbB083
Csa1G369490	CSPI01G19280	Wild cucumber (PI 183967)	cpicuB001
Csa1G369490	Cucsa.235570	Cucumber (Gy14) v1	cgycuB333
Csa1G369490	CmoCh10G006460	Cucurbita moschata (Rifu)	cmocuB053
Csa1G369490	Cp4.1LG18g04320	Cucurbita pepo (Zucchini)	cpecuB355
Csa1G369490	Carg09862	Silver-seed gourd	carcuB0134
Csa1G369490	Carg10867	Silver-seed gourd	carcuB0596

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G369490	Wax gourd	cuwgoB004
Csa1G369490	Wax gourd	cuwgoB098
Csa1G369490	Cucumber (Gy14) v1	cgycuB149
Csa1G369490	Cucurbita maxima (Rimu)	cmacuB063
Csa1G369490	Cucurbita maxima (Rimu)	cmacuB103
Csa1G369490	Cucurbita maxima (Rimu)	cmacuB783
Csa1G369490	Cucurbita moschata (Rifu)	cmocuB090
Csa1G369490	Cucurbita pepo (Zucchini)	cpecuB640
Csa1G369490	Cucumber (Gy14) v2	cgybcuB002
Csa1G369490	Melon (DHL92) v3.6.1	cumedB050
Csa1G369490	Silver-seed gourd	carcuB0039