Csa1G329910 (gene) Cucumber (Chinese Long) v2

NameCsa1G329910
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 13884706 .. 13888453 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTCAATCGCATTAGATAGTCTTTTCATTCGGTAAGTATTCTCTTCACTACTCCCACAGCCTTATTCTACCGCTAACGTTAATATATATATATATATTACATACGGACCAGTTTAGATAATCAACAATTACAAGTGCATTACAAGTGCGCGAGTGGCCAGTGTTGAACCTACTTATATATCATGATTGTTTAGAAGACGAATTCCACACATGCATGTGGTCGATTGATCGAGTATTGACTGAGGCATTTTTTATATTTTTCATCATGGACACGTGGATTATTTTTCGTTTTCAAAATTATTCTATATAGTATAAATATTTTTCGGTTTATTATATTTTTTTAAAAACTAATATAATATCAATTTCAAAAGTTATTCCAATAATAAAATTATCTCCTACCTCCATAGAGGTTCAAGTCTTACTACCCTATAAAAACATCAAAGTTATATCACTCGTAACTTTTTGTACTGCTCATACCTTCAATTTTATCCACTCTAAAACAAGAGAACCTAATTGAAAAAAAAATTAACCTTGGTTAACACAACTAAGCTTCAAATATTTCTAACTATAACAAGTTTAAACTAAAGATATCGACCCCGTTTATAGTTATGGGAGTCTATCATTATTTTTAAAAGCTTTTTTAAGGTAAAATAATTCAACTTCTAATATTCTGCTCCCTAAACACGTTATATGACGACTGGAAGAGAAAAAAAAAAAGGAAGCGTTTTAAAAAGGTAGACAAAAACCTTTTCAGATTTTTAGTCATTTTAATTAAGATCGCAAAGATATTAAAAGCAGAGTAGGAGGTTTTGAGTTTGACGAGTGACGAAAGAATTCTGAAAATCCTTCTAACCACAAAAATATATGAATCAAAAAAAACAAAAACAAATTGGACATATCCCCATAAAACTATATCTCACTTTTAAAAAAGAAAAAGGAACCCAAAACAACATCCATTCTTAGTTGAGTTTTTGGAAAACACACCTTTGCTTCAGGTTCCAAATTCCAATCACACTCACAAATCTGCTTCAGCTTAAATTTTAAGCTTTTACTCCTTTTTTTTTTTTCCTTTCTGTTCTCCATCAACAAGAATCTTACCACAATTTCACGTAATTTAGCATCTTAGAACACTCTTCAACCTATCATCTTTATAAGCACCGTATCCTCCTCTAGTTCATCAACTAAATCGTCCCACCCCCCTTGCCTTGCTGCTCCTACAAATCCGTTGCTGCCCTCGCCCCACCATATTCAAATAGGTTCAGTTAGTTTGATTCATTTGTTTATTTGATTTAGCTGTTTGTCTATTGTTTTGAATGGCGAAAGTTTTGGGATTCTATACCCATGCATGAATTATCAATTAGAGATTTGCTGATTGCTATACAATTGTGTGCAGAAATTATCATTATCGTGGTCATATTTTGGATACCATTGAGCAAAACAAGTAAGTTGGTTTCTCATCTATTGTTGTTGTGTCCTCCTAGATTTTAACGCACTAAATGTACTGAAATACGTACTCTCCTTCAATAATTTTCTTACAATCTAGTTAAGTTAACTAGAGAATTAGTTTTACCGTTCAAGTGAGTTTCAGTTAGTTTAACACTAATGCAATAGTACTAAAAATATAAGTAAATTTGAGGTTAAACATGTTTTTAGTTTCTAAACTTTAATTAAAATAACATAATTTAGTTTTTGAATTTAATTAGTTCATATACTTAAATTTTGTTAGAATTTAGAGTTTAGAAATTTTAGTAATTTAGTCAATGTAATTTAATCTCCAATATTAAAAAAAAAAATGGTCAATTTTTATTATTTTATGATATAGAATTTGTATTTTAAAAAAATATTGAGTCTCTAGCTAATAGTTCATTTGGGGAAGAAATCTAATTAAACCTTAATACTAGTTTCTATTGAAAGGAATTGAATGGTTACAAAATTTAAAGTAGAATGTAGCAACTGTTAGGGTTTAATTGTATCAAAATTAAAAATATATGAACAGAAATCAGAATTGTTATAAAAGTAAAGTCATGGGGGAGTTCTTGTTTAAAGTATTTTTTTAACACTGCTTTTTAAACTTTCATGGGGTTGGTTGTAAAAGGGTCCAATACAGTAGGTGAGGGAGGTTGATTGAGGTTTATTTTACAAATAAATAAGTTTTGAATTAGTTTGAAATCCTAAAATTTGGAATTCTTAGAGAGAGCATCCAAACCATATTTACATATTTGGCTTCTAACAATTTGATGCAGAAAAAGAAAAAAAAATATATATTGGGATTCTGATTACTTTTGTACACTTTTAGTGTCTTCAAAAGATATTTCTTATTTTTTTCACTAAATAAGAAATTCTCTTTCTTTCGTTCTCTCTGTTTCCTGTTATGCAAATATAAAATCATTTTAGTTAAAATATTGTTTTGATGATTTAGTTTTAGTTTTTAAAATAGAAAATTGCATTAAATCACATCAAAAATGTAGAAAAAAACACTTCATGATACTTTTTTTTTTCTACTTTTTTGCAAACTCTTCCTTTATAATTATCTAATTTTATTTGTTTGAATTATAATAGATCTTATATCTAATGCATCAAAGTCAAAATTTAATTAAATAATAGTGATTTCCATGCCATCCAAAAAACATAAACTAAATTGTTTTACATCATAAAACTATTCAAAATACATACAAATATAGCAAAATTTTATAATTTATCCATGATAGACATTTATTAGTATCTATCGACAATAAATAATAGTAATATATCAATATCTATCAACTTATATCAGTAATAACAAAAAAGAAAAAATGTAACTAAGGCATAATAAACAAATTTTGGAAAAAAATTTAGATTTATTAAATATATAGGAGCTAAAATTGAACCAAAATAACGATTTAACGAATATTTTTCAACGAGACTTCAAGTTGTATGATTCCCACGTGATGTTGAATCTATCTTGGATAATGTCAAATCTCTACTTTGCATAACCATTGTATTGGTAGAACCTCTATCGTAAATATAACAAAACTTTAAATCTAATCTTGAAAGTTTATTGGTGATAAACTATATAATAGAAATTTTATATATAGTTTAGTTTATGTATGTTAGTGGATAGATTTTGTTATGTTTTAGTTTCATAAAAGTATGAGTGAATATAATAGGAGGCAGTATTATAGAATCTGACTCGTAAATGTTGCTATAGTTGCATTCTTAAAATTATTATTAGCGTTGAAAATGTTTGTTTATGCAATTGCCTCAATACTTTCTTTGTTTGCATATTCACTTTCTATTTATATATTAGAAAAATAAGTTAAAGACTTTTAAAAACTAAAAATATAAATGTGAAGAACTGTTTTGTTCAATAGACATAATTCAAATGTTTTTGGATGGGGAGATAAAGGAAGAAACAAACATAAATTTCATTGGTTTAGAACTAAAAGAAAATGGTTATTAGCACAAGGGCCAACTTTGTAATTTACTGATATTCATCATCCTTTTCTTGTGGGGGTAACAATCAAACAAACAAATCACAAATCTCCCACTCCTTAAATTTCTTCTCTTTATTCTAAAATCTCATCTAATATTAAACTATTTATATAACTCCAATTTCTGGGTTCTTACGCTTGAAACTACGAATATTGTTTTGATATATAGCTGCTTATTCAAATGAGGAACTCCATCATAGAAGAAGTACACGAAATTGAGACTAATGAAAGTAAAGAAGAAGACAAGACTCAAAATGAAGCAGAGGATGTTAAGA

mRNA sequence

ATGAGGTCAATCGCATTAGATAGTCTTTTCATTCGTTCATCAACTAAATCGTCCCACCCCCCTTGCCTTGCTGCTCCTACAAATCCGTTGCTGCCCTCGCCCCACCATATTCAAATAGAAATTATCATTATCGTGGTCATATTTTGGATACCATTGAGCAAAACAACTGCTTATTCAAATGAGGAACTCCATCATAGAAGAAGTACACGAAATTGA

Coding sequence (CDS)

ATGAGGTCAATCGCATTAGATAGTCTTTTCATTCGTTCATCAACTAAATCGTCCCACCCCCCTTGCCTTGCTGCTCCTACAAATCCGTTGCTGCCCTCGCCCCACCATATTCAAATAGAAATTATCATTATCGTGGTCATATTTTGGATACCATTGAGCAAAACAACTGCTTATTCAAATGAGGAACTCCATCATAGAAGAAGTACACGAAATTGA

Protein sequence

MRSIALDSLFIRSSTKSSHPPCLAAPTNPLLPSPHHIQIEIIIIVVIFWIPLSKTTAYSNEELHHRRSTRN*
BLAST of Csa1G329910 vs. TrEMBL
Match: A0A0A0LTS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G329910 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1

Query: 1  MRSIALDSLFIRSSTKSSHPPCLAAPTNPLLPSPHHIQIEIIIIVVIFWIPLSKTTAYSN 60
          MRSIALDSLFIRSSTKSSHPPCLAAPTNPLLPSPHHIQIEIIIIVVIFWIPLSKTTAYSN
Sbjct: 1  MRSIALDSLFIRSSTKSSHPPCLAAPTNPLLPSPHHIQIEIIIIVVIFWIPLSKTTAYSN 60

Query: 61 EELHHRRSTRN 72
          EELHHRRSTRN
Sbjct: 61 EELHHRRSTRN 71

BLAST of Csa1G329910 vs. NCBI nr
Match: gi|700210234|gb|KGN65330.1| (hypothetical protein Csa_1G329910 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.5e-32
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1

Query: 1  MRSIALDSLFIRSSTKSSHPPCLAAPTNPLLPSPHHIQIEIIIIVVIFWIPLSKTTAYSN 60
          MRSIALDSLFIRSSTKSSHPPCLAAPTNPLLPSPHHIQIEIIIIVVIFWIPLSKTTAYSN
Sbjct: 1  MRSIALDSLFIRSSTKSSHPPCLAAPTNPLLPSPHHIQIEIIIIVVIFWIPLSKTTAYSN 60

Query: 61 EELHHRRSTRN 72
          EELHHRRSTRN
Sbjct: 61 EELHHRRSTRN 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LTS8_CUCSA1.1e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G329910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|700210234|gb|KGN65330.1|1.5e-32100.00hypothetical protein Csa_1G329910 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU092568cucumber EST collection version 3.0transcribed_cluster
CU126997cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G329910.1Csa1G329910.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU092568CU092568transcribed_cluster
CU126997CU126997transcribed_cluster


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None