Csa1G306800 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G306800
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pentatricopeptide repeat protein; contains IPR002885 (Pentatricopeptide repeat), IPR011990 (Tetratricopeptide-like helical)
Location	Chr1 : 13648619 .. 13650823 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCTCTCTTCCCCTTCACTCCTACTTTCACCCTCTTTCCATGTCCTTCCCTCTTCCGATCCTCCTTATAGGGTCCTTCAAGAACACCCATCTCTCAAGCTTCTCTCCAAATGCCAAAGCATTCGAACTTTCAAACAAATCCACGCTCACATCATCAAAACTGGCCTCCACAACACCCTCTTCGCCCTCAGCAAGCTCATCGAGTTCTCTGCTGTTTCACGCTCTGGTGATATCTCTTATGCCATCTCCTTGTTTAATTCCATCGAAGAACCTAATTTATTTATTTGGAATTCCATGATTCGAGGGCTTTCCATGAGTCTGTCACCAGCTCTGGCCTTGGTTTTCTTCGTCAGAATGATTTATTCCGGGGTTGAGCCGAACTCTTATACCTTCCCTTTTCTTTTGAAGTCTTGTGCTAAGCTCGCCTCTGCCCATGAAGGGAAACAGATTCATGCCCATGTTTTGAAGCTTGGGTTTGTGTCTGATGTGTTCATTCATACCTCGCTTATCAATATGTATGCCCAAAGTGGTGAAATGAATAATGCCCAATTGGTTTTTGATCAAAGTAATTTCAGGGATGCGATTTCTTTCACTGCATTAATAGCTGGTTATGCGTTGTGGGGTTATATGGATCGTGCTCGGCAACTGTTTGACGAAATGCCTGTGAAAGATGTGGTGTCTTGGAATGCTATGATTGCTGGCTATGCACAAATGGGTCGTTCCAAAGAGGCGTTATTATTGTTTGAAGATATGAGGAAAGCAAATGTCCCCCCAAACGAAAGTACTATTGTGTCTGTTCTTTCTGCTTGTGCGCAGTCAAATGCACTTGACTTAGGAAACTCAATGCGCTCTTGGATTGAAGATCGTGGGCTTTGTTCAAATCTTAAGCTTGTTAATGCCCTTATTGACATGTATTCGAAGTGTGGTGATCTTCAGACTGCTCGTGAATTGTTTGATGATATGCTTGAAAGAGATGTAATCTCATGGAATGTTATGATCGGAGGTTACACTCACATGTGCAGCTATAAAGAAGCTTTAGCGCTCTTCCGCGAGATGCTAGCCTCAGGTGTTGAGCCTACTGAGATTACTTTCCTTAGCATTCTTCCATCTTGTGCTCATTTAGGTGCTATTGACCTTGGCAAGTGGATACATGCTTATATAAACAAAAACTTCAACTCAGTCAGTACCTCTCTTTCGACGAGTCTGATAGATTTGTATGCTAAATGCGGTAATATAGTGGCAGCACGACAGGTCTTTGATGGTATGAAAATCAAAAGCTTGGCTTCTTGGAATGCTATGATATGTGGGTTAGCAATGCATGGACAAGCAGATAAGGCTTTTGAGCTTTTCTCAAAAATGTCTAGTGATGGAATTGAACCAAATGAGATAACCTTTGTTGGTATTTTATCTGCTTGTAAACATGCTGGTTTGGTTGATCTCGGACAACAGTTTTTCAGCTCTATGGTTCAAGACTATAAGATATCTCCTAAATCCCAACATTACGGATGCATGATAGATCTTCTTGGGCGAGCTGGGTTGTTCGAGGAAGCAGAGTCCTTGTTACAAAATATGGAAGTGAAACCAGACGGAGCCATTTGGGGTTCCCTTCTTGGAGCATGTAGAGACCATGGACGAGTCGAGTTGGGAGAATTAGTTGCGGAACGTCTTTTCGAACTCGAGCCAGATAATCCTGGAGCATATGTGCTTTTATCTAACATATATGCAGGAGCTGGTAAATGGGATGATGTAGCAAGAATAAGAACAAGATTGAACGACAGGGGAATGAAAAAGGTTCCTGGTTGTACCACGATTGAAGTCGATAACGTCGTTCATGAGTTCCTAGTAGGGGACAAAGTTCATCCACAAAGTGAAGATATTTACAGGATGTTGGAAGAAGTAGACGAACAATTAAAGGTATTTGGATTTGTGGCAGATACTTCTGAGGTATTGTATGACATGGATGAAGAATGGAAAGAAGGAGCTCTAAGCCACCACAGTGAGAAATTAGCAATTGCTTTTGGATTGATAAGTACAAAACCAGGTACACCAATTAGAATCATTAAAAATCTTCGTGTTTGTCGTAATTGTCATTCTGCTACAAAGCTAATATCTAAGATATTCAATAGGGAGATTATTGCTAGAGATAGAAACCGTTTCCATCACTTCAAAGATGGTTCTTGCTCATGTAATGACTATTGGTGA

mRNA sequence

ATGGCGCTCTCTTCCCCTTCACTCCTACTTTCACCCTCTTTCCATGTCCTTCCCTCTTCCGATCCTCCTTATAGGGTCCTTCAAGAACACCCATCTCTCAAGCTTCTCTCCAAATGCCAAAGCATTCGAACTTTCAAACAAATCCACGCTCACATCATCAAAACTGGCCTCCACAACACCCTCTTCGCCCTCAGCAAGCTCATCGAGTTCTCTGCTGTTTCACGCTCTGGTGATATCTCTTATGCCATCTCCTTGTTTAATTCCATCGAAGAACCTAATTTATTTATTTGGAATTCCATGATTCGAGGGCTTTCCATGAGTCTGTCACCAGCTCTGGCCTTGGTTTTCTTCGTCAGAATGATTTATTCCGGGGTTGAGCCGAACTCTTATACCTTCCCTTTTCTTTTGAAGTCTTGTGCTAAGCTCGCCTCTGCCCATGAAGGGAAACAGATTCATGCCCATGTTTTGAAGCTTGGGTTTGTGTCTGATGTGTTCATTCATACCTCGCTTATCAATATGTATGCCCAAAGTGGTGAAATGAATAATGCCCAATTGGTTTTTGATCAAAGTAATTTCAGGGATGCGATTTCTTTCACTGCATTAATAGCTGGTTATGCGTTGTGGGGTTATATGGATCGTGCTCGGCAACTGTTTGACGAAATGCCTGTGAAAGATGTGGTGTCTTGGAATGCTATGATTGCTGGCTATGCACAAATGGGTCGTTCCAAAGAGGCGTTATTATTGTTTGAAGATATGAGGAAAGCAAATGTCCCCCCAAACGAAAGTACTATTGTGTCTGTTCTTTCTGCTTGTGCGCAGTCAAATGCACTTGACTTAGGAAACTCAATGCGCTCTTGGATTGAAGATCGTGGGCTTTGTTCAAATCTTAAGCTTGTTAATGCCCTTATTGACATGTATTCGAAGTGTGGTGATCTTCAGACTGCTCGTGAATTGTTTGATGATATGCTTGAAAGAGATGTAATCTCATGGAATGTTATGATCGGAGGTTACACTCACATGTGCAGCTATAAAGAAGCTTTAGCGCTCTTCCGCGAGATGCTAGCCTCAGGTGTTGAGCCTACTGAGATTACTTTCCTTAGCATTCTTCCATCTTGTGCTCATTTAGGTGCTATTGACCTTGGCAAGTGGATACATGCTTATATAAACAAAAACTTCAACTCAGTCAGTACCTCTCTTTCGACGAGTCTGATAGATTTGTATGCTAAATGCGGTAATATAGTGGCAGCACGACAGGTCTTTGATGGTATGAAAATCAAAAGCTTGGCTTCTTGGAATGCTATGATATGTGGGTTAGCAATGCATGGACAAGCAGATAAGGCTTTTGAGCTTTTCTCAAAAATGTCTAGTGATGGAATTGAACCAAATGAGATAACCTTTGTTGGTATTTTATCTGCTTGTAAACATGCTGGTTTGGTTGATCTCGGACAACAGTTTTTCAGCTCTATGGTTCAAGACTATAAGATATCTCCTAAATCCCAACATTACGGATGCATGATAGATCTTCTTGGGCGAGCTGGGTTGTTCGAGGAAGCAGAGTCCTTGTTACAAAATATGGAAGTGAAACCAGACGGAGCCATTTGGGGTTCCCTTCTTGGAGCATGTAGAGACCATGGACGAGTCGAGTTGGGAGAATTAGTTGCGGAACGTCTTTTCGAACTCGAGCCAGATAATCCTGGAGCATATGTGCTTTTATCTAACATATATGCAGGAGCTGGTAAATGGGATGATGTAGCAAGAATAAGAACAAGATTGAACGACAGGGGAATGAAAAAGGTTCCTGGTTGTACCACGATTGAAGTCGATAACGTCGTTCATGAGTTCCTAGTAGGGGACAAAGTTCATCCACAAAGTGAAGATATTTACAGGATGTTGGAAGAAGTAGACGAACAATTAAAGGTATTTGGATTTGTGGCAGATACTTCTGAGGTATTGTATGACATGGATGAAGAATGGAAAGAAGGAGCTCTAAGCCACCACAGTGAGAAATTAGCAATTGCTTTTGGATTGATAAGTACAAAACCAGGTACACCAATTAGAATCATTAAAAATCTTCGTGTTTGTCGTAATTGTCATTCTGCTACAAAGCTAATATCTAAGATATTCAATAGGGAGATTATTGCTAGAGATAGAAACCGTTTCCATCACTTCAAAGATGGTTCTTGCTCATGTAATGACTATTGGTGA

Coding sequence (CDS)

ATGGCGCTCTCTTCCCCTTCACTCCTACTTTCACCCTCTTTCCATGTCCTTCCCTCTTCCGATCCTCCTTATAGGGTCCTTCAAGAACACCCATCTCTCAAGCTTCTCTCCAAATGCCAAAGCATTCGAACTTTCAAACAAATCCACGCTCACATCATCAAAACTGGCCTCCACAACACCCTCTTCGCCCTCAGCAAGCTCATCGAGTTCTCTGCTGTTTCACGCTCTGGTGATATCTCTTATGCCATCTCCTTGTTTAATTCCATCGAAGAACCTAATTTATTTATTTGGAATTCCATGATTCGAGGGCTTTCCATGAGTCTGTCACCAGCTCTGGCCTTGGTTTTCTTCGTCAGAATGATTTATTCCGGGGTTGAGCCGAACTCTTATACCTTCCCTTTTCTTTTGAAGTCTTGTGCTAAGCTCGCCTCTGCCCATGAAGGGAAACAGATTCATGCCCATGTTTTGAAGCTTGGGTTTGTGTCTGATGTGTTCATTCATACCTCGCTTATCAATATGTATGCCCAAAGTGGTGAAATGAATAATGCCCAATTGGTTTTTGATCAAAGTAATTTCAGGGATGCGATTTCTTTCACTGCATTAATAGCTGGTTATGCGTTGTGGGGTTATATGGATCGTGCTCGGCAACTGTTTGACGAAATGCCTGTGAAAGATGTGGTGTCTTGGAATGCTATGATTGCTGGCTATGCACAAATGGGTCGTTCCAAAGAGGCGTTATTATTGTTTGAAGATATGAGGAAAGCAAATGTCCCCCCAAACGAAAGTACTATTGTGTCTGTTCTTTCTGCTTGTGCGCAGTCAAATGCACTTGACTTAGGAAACTCAATGCGCTCTTGGATTGAAGATCGTGGGCTTTGTTCAAATCTTAAGCTTGTTAATGCCCTTATTGACATGTATTCGAAGTGTGGTGATCTTCAGACTGCTCGTGAATTGTTTGATGATATGCTTGAAAGAGATGTAATCTCATGGAATGTTATGATCGGAGGTTACACTCACATGTGCAGCTATAAAGAAGCTTTAGCGCTCTTCCGCGAGATGCTAGCCTCAGGTGTTGAGCCTACTGAGATTACTTTCCTTAGCATTCTTCCATCTTGTGCTCATTTAGGTGCTATTGACCTTGGCAAGTGGATACATGCTTATATAAACAAAAACTTCAACTCAGTCAGTACCTCTCTTTCGACGAGTCTGATAGATTTGTATGCTAAATGCGGTAATATAGTGGCAGCACGACAGGTCTTTGATGGTATGAAAATCAAAAGCTTGGCTTCTTGGAATGCTATGATATGTGGGTTAGCAATGCATGGACAAGCAGATAAGGCTTTTGAGCTTTTCTCAAAAATGTCTAGTGATGGAATTGAACCAAATGAGATAACCTTTGTTGGTATTTTATCTGCTTGTAAACATGCTGGTTTGGTTGATCTCGGACAACAGTTTTTCAGCTCTATGGTTCAAGACTATAAGATATCTCCTAAATCCCAACATTACGGATGCATGATAGATCTTCTTGGGCGAGCTGGGTTGTTCGAGGAAGCAGAGTCCTTGTTACAAAATATGGAAGTGAAACCAGACGGAGCCATTTGGGGTTCCCTTCTTGGAGCATGTAGAGACCATGGACGAGTCGAGTTGGGAGAATTAGTTGCGGAACGTCTTTTCGAACTCGAGCCAGATAATCCTGGAGCATATGTGCTTTTATCTAACATATATGCAGGAGCTGGTAAATGGGATGATGTAGCAAGAATAAGAACAAGATTGAACGACAGGGGAATGAAAAAGGTTCCTGGTTGTACCACGATTGAAGTCGATAACGTCGTTCATGAGTTCCTAGTAGGGGACAAAGTTCATCCACAAAGTGAAGATATTTACAGGATGTTGGAAGAAGTAGACGAACAATTAAAGGTATTTGGATTTGTGGCAGATACTTCTGAGGTATTGTATGACATGGATGAAGAATGGAAAGAAGGAGCTCTAAGCCACCACAGTGAGAAATTAGCAATTGCTTTTGGATTGATAAGTACAAAACCAGGTACACCAATTAGAATCATTAAAAATCTTCGTGTTTGTCGTAATTGTCATTCTGCTACAAAGCTAATATCTAAGATATTCAATAGGGAGATTATTGCTAGAGATAGAAACCGTTTCCATCACTTCAAAGATGGTTCTTGCTCATGTAATGACTATTGGTGA

Protein sequence

MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW*

Homology

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BLAST of Csa1G306800 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 961.4 bits (2484), Expect = 5.5e-279
Identity = 466/740 (62.97%), Postives = 588/740 (79.46%), Query Frame = 1


Query: 1   MALSSPSLLLSPS--FHVLPSS-DPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGL 60
           M   SP  + S S  FH LPSS DPPY  ++ HPSL LL  C+++++ + IHA +IK GL
Sbjct: 2   MLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGL 61

Query: 61  HNTLFALSKLIEFSAVSRSGD-ISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVF 120
           HNT +ALSKLIEF  +S   + + YAIS+F +I+EPNL IWN+M RG ++S  P  AL  
Sbjct: 62  HNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKL 121

Query: 121 FVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQ 180
           +V MI  G+ PNSYTFPF+LKSCAK  +  EG+QIH HVLKLG   D+++HTSLI+MY Q
Sbjct: 122 YVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQ 181

Query: 181 SGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGY 240
           +G + +A  VFD+S  RD +S+TALI GYA  GY++ A++LFDE+PVKDVVSWNAMI+GY
Sbjct: 182 NGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGY 241

Query: 241 AQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNL 300
           A+ G  KEAL LF+DM K NV P+EST+V+V+SACAQS +++LG  +  WI+D G  SNL
Sbjct: 242 AETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNL 301

Query: 301 KLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLAS 360
           K+VNALID+YSKCG+L+TA  LF+ +  +DVISWN +IGGYTHM  YKEAL LF+EML S
Sbjct: 302 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361

Query: 361 GVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS--TSLSTSLIDLYAKCGNIV 420
           G  P ++T LSILP+CAHLGAID+G+WIH YI+K    V+  +SL TSLID+YAKCG+I 
Sbjct: 362 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 421

Query: 421 AARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK 480
           AA QVF+ +  KSL+SWNAMI G AMHG+AD +F+LFS+M   GI+P++ITFVG+LSAC 
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481

Query: 481 HAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIW 540
           H+G++DLG+  F +M QDYK++PK +HYGCMIDLLG +GLF+EAE ++  ME++PDG IW
Sbjct: 482 HSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIW 541

Query: 541 GSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDR 600
            SLL AC+ HG VELGE  AE L ++EP+NPG+YVLLSNIYA AG+W++VA+ R  LND+
Sbjct: 542 CSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDK 601

Query: 601 GMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDM 660
           GMKKVPGC++IE+D+VVHEF++GDK HP++ +IY MLEE++  L+  GFV DTSEVL +M
Sbjct: 602 GMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEM 661

Query: 661 DEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIA 720
           +EEWKEGAL HHSEKLAIAFGLISTKPGT + I+KNLRVCRNCH ATKLISKI+ REIIA
Sbjct: 662 EEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIA 721

Query: 721 RDRNRFHHFKDGSCSCNDYW 735
           RDR RFHHF+DG CSCNDYW
Sbjct: 722 RDRTRFHHFRDGVCSCNDYW 741

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BLAST of Csa1G306800 vs. Swiss-Prot
Match: PP224_ARATH (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1)

HSP 1 Score: 564.7 bits (1454), Expect = 1.5e-159
Identity = 299/732 (40.85%), Postives = 439/732 (59.97%), Query Frame = 1


Query: 3   LSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLF 62
           L+SP L  +   H    SD  Y  L +  + K           KQIHA ++  GL  + F
Sbjct: 7   LASPLLYTNSGIH----SDSFYASLIDSATHKA--------QLKQIHARLLVLGLQFSGF 66

Query: 63  ALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIY 122
            ++KLI  S  S  GDI++A  +F+ +  P +F WN++IRG S +     AL+ +  M  
Sbjct: 67  LITKLIHAS--SSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQL 126

Query: 123 SGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNN 182
           + V P+S+TFP LLK+C+ L+    G+ +HA V +LGF +DVF+   LI +YA+   + +
Sbjct: 127 ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS 186

Query: 183 AQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRS 242
           A+ VF+                                +P + +VSW A+++ YAQ G  
Sbjct: 187 ARTVFEGL-----------------------------PLPERTIVSWTAIVSAYAQNGEP 246

Query: 243 KEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNAL 302
            EAL +F  MRK +V P+   +VSVL+A      L  G S+ + +   GL     L+ +L
Sbjct: 247 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 306

Query: 303 IDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTE 362
             MY+KCG + TA+ LFD M   ++I WN MI GY      +EA+ +F EM+   V P  
Sbjct: 307 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 366

Query: 363 ITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDG 422
           I+  S + +CA +G+++  + ++ Y+ ++       +S++LID++AKCG++  AR VFD 
Sbjct: 367 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 426

Query: 423 MKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLG 482
              + +  W+AMI G  +HG+A +A  L+  M   G+ PN++TF+G+L AC H+G+V  G
Sbjct: 427 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 486

Query: 483 QQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACR 542
             FF+ M  D+KI+P+ QHY C+IDLLGRAG  ++A  +++ M V+P   +WG+LL AC+
Sbjct: 487 WWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 546

Query: 543 DHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGC 602
            H  VELGE  A++LF ++P N G YV LSN+YA A  WD VA +R R+ ++G+ K  GC
Sbjct: 547 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 606

Query: 603 TTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGA 662
           + +EV   +  F VGDK HP+ E+I R +E ++ +LK  GFVA+    L+D+++E  E  
Sbjct: 607 SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 666

Query: 663 LSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHH 722
           L  HSE++AIA+GLIST  GTP+RI KNLR C NCH+ATKLISK+ +REI+ RD NRFHH
Sbjct: 667 LCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHH 694

Query: 723 FKDGSCSCNDYW 735
           FKDG CSC DYW
Sbjct: 727 FKDGVCSCGDYW 694

[Close]

BLAST of Csa1G306800 vs. Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 553.1 bits (1424), Expect = 4.5e-156
Identity = 293/699 (41.92%), Postives = 411/699 (58.80%), Query Frame = 1


Query: 71  SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSY 130
           SA S+ GD+      F+ + + +   W +MI G         A+     M+  G+EP  +
Sbjct: 88  SAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQF 147

Query: 131 TFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQS 190
           T   +L S A       GK++H+ ++KLG   +V +  SL+NMYA+ G+   A+ VFD+ 
Sbjct: 148 TLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM 207

Query: 191 NFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE 250
             RD  S+ A+IA +   G MD A   F++M  +D+V+WN+MI+G+ Q G    AL +F 
Sbjct: 208 VVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFS 267

Query: 251 DM-RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC 310
            M R + + P+  T+ SVLSACA    L +G  + S I   G   +  ++NALI MYS+C
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC 327

Query: 311 GDLQTAREL---------------------------------FDDMLERDVISWNVMIGG 370
           G ++TAR L                                 F  + +RDV++W  MI G
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVG 387

Query: 371 YTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS 430
           Y    SY EA+ LFR M+  G  P   T  ++L   + L ++  GK IH    K+    S
Sbjct: 388 YEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS 447

Query: 431 TSLSTSLIDLYAKCGNIVAARQVFDGMKI-KSLASWNAMICGLAMHGQADKAFELFSKMS 490
            S+S +LI +YAK GNI +A + FD ++  +   SW +MI  LA HG A++A ELF  M 
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507

Query: 491 SDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLF 550
            +G+ P+ IT+VG+ SAC HAGLV+ G+Q+F  M    KI P   HY CM+DL GRAGL 
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567

Query: 551 EEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIY 610
           +EA+  ++ M ++PD   WGSLL ACR H  ++LG++ AERL  LEP+N GAY  L+N+Y
Sbjct: 568 QEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLY 627

Query: 611 AGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVD 670
           +  GKW++ A+IR  + D  +KK  G + IEV + VH F V D  HP+  +IY  ++++ 
Sbjct: 628 SACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIW 687

Query: 671 EQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCR 730
           +++K  G+V DT+ VL+D++EE KE  L HHSEKLAIAFGLIST   T +RI+KNLRVC 
Sbjct: 688 DEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCN 747

Query: 731 NCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 735
           +CH+A K ISK+  REII RD  RFHHFKDG CSC DYW
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

HSP 2 Score: 148.3 bits (373), Expect = 3.3e-34
Identity = 73/219 (33.33%), Postives = 126/219 (57.53%), Query Frame = 1


Query: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194
           L KS  K       + +H  V+K G +  V++  +L+N+Y+++G   +A+ +FD+   R 
Sbjct: 20  LQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRT 79

Query: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254
           A S+  +++ Y+  G MD   + FD++P +D VSW  MI GY  +G+  +A+ +  DM K
Sbjct: 80  AFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK 139

Query: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314
             + P + T+ +VL++ A +  ++ G  + S+I   GL  N+ + N+L++MY+KCGD   
Sbjct: 140 EGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM 199

Query: 315 ARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREM 354
           A+ +FD M+ RD+ SWN MI  +  +     A+A F +M
Sbjct: 200 AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238

HSP 3 Score: 141.0 bits (354), Expect = 5.3e-32
Identity = 100/390 (25.64%), Postives = 178/390 (45.64%), Query Frame = 1


Query: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194
           L KS  K       + +H  V+K G +  V++  +L+N+Y+++G   +A+ +FD+   R 
Sbjct: 20  LQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRT 79

Query: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGR------------- 254
           A S+  +++ Y+  G MD   + FD++P +D VSW  MI GY  +G+             
Sbjct: 80  AFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK 139

Query: 255 ---------------SKEALLLFEDMRKAN---VPPNESTIVSVLSACAQSNALDLGNSM 314
                          S  A    E  +K +   V       VSV ++     A      M
Sbjct: 140 EGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM 199

Query: 315 RSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSY 374
             ++ DR +  ++   NA+I ++ + G +  A   F+ M ERD+++WN MI G+      
Sbjct: 200 AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYD 259

Query: 375 KEALALFREMLA-SGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTS 434
             AL +F +ML  S + P   T  S+L +CA+L  + +GK IH++I      +S  +  +
Sbjct: 260 LRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNA 319

Query: 435 LIDLYAKCGNIVAARQVFD--GMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIE 491
           LI +Y++CG +  AR++ +  G K   +  + A++ G    G  ++A  +F  +    + 
Sbjct: 320 LISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDV- 379

HSP 4 Score: 46.6 bits (109), Expect = 1.4e-03
Identity = 29/141 (20.57%), Postives = 63/141 (44.68%), Query Frame = 1


Query: 360 PTEITFLSILPSCAHLGAIDLGK--------WIHAYINKNFNSVSTSLSTSLIDLYAKCG 419
           P  ++  ++L  C +L    + K         +H  + K+    S  L  +L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 420 NIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILS 479
             + AR++FD M +++  SWN ++   +  G  D   E F ++     + + +++  ++ 
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP----QRDSVSWTTMIV 123

Query: 480 ACKHAGLVDLGQQFFSSMVQD 493
             K+ G      +    MV++
Sbjct: 124 GYKNIGQYHKAIRVMGDMVKE 140

[Close]

BLAST of Csa1G306800 vs. Swiss-Prot
Match: PP175_ARATH (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 1.3e-155
Identity = 275/709 (38.79%), Postives = 442/709 (62.34%), Query Frame = 1


Query: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92
           + L+ +C S+R  KQ H H+I+TG  +  ++ SKL   +A+S    + YA  +F+ I +P
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIY-SGVEPNSYTFPFLLKSCAKLASAHEGKQI 152
           N F WN++IR  +    P L++  F+ M+  S   PN YTFPFL+K+ A+++S   G+ +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 153 HAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYM 212
           H   +K    SDVF+  SLI+ Y   G++++A  VF     +D +S+ ++I G+   G  
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 213 DRARQLFDEMPVKDV----VSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSV 272
           D+A +LF +M  +DV    V+   +++  A++   +    +   + +  V  N +   ++
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAM 273

Query: 273 LSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDV 332
           L    +  +++    +   +E++   +       ++D Y+   D + ARE+ + M ++D+
Sbjct: 274 LDMYTKCGSIEDAKRLFDAMEEKDNVT----WTTMLDGYAISEDYEAAREVLNSMPQKDI 333

Query: 333 ISWNVMIGGYTHMCSYKEALALFREM-LASGVEPTEITFLSILPSCAHLGAIDLGKWIHA 392
           ++WN +I  Y       EAL +F E+ L   ++  +IT +S L +CA +GA++LG+WIH+
Sbjct: 334 VAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 393

Query: 393 YINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADK 452
           YI K+   ++  ++++LI +Y+KCG++  +R+VF+ ++ + +  W+AMI GLAMHG  ++
Sbjct: 394 YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNE 453

Query: 453 AFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMI 512
           A ++F KM    ++PN +TF  +  AC H GLVD  +  F  M  +Y I P+ +HY C++
Sbjct: 454 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIV 513

Query: 513 DLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPG 572
           D+LGR+G  E+A   ++ M + P  ++WG+LLGAC+ H  + L E+   RL ELEP N G
Sbjct: 514 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDG 573

Query: 573 AYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSED 632
           A+VLLSNIYA  GKW++V+ +R  +   G+KK PGC++IE+D ++HEFL GD  HP SE 
Sbjct: 574 AHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 633

Query: 633 IYRMLEEVDEQLKVFGFVADTSEVLYDM-DEEWKEGALSHHSEKLAIAFGLISTKPGTPI 692
           +Y  L EV E+LK  G+  + S+VL  + +EE KE +L+ HSEKLAI +GLIST+    I
Sbjct: 634 VYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVI 693

Query: 693 RIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 735
           R+IKNLRVC +CHS  KLIS++++REII RDR RFHHF++G CSCND+W
Sbjct: 694 RVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738

[Close]

BLAST of Csa1G306800 vs. Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 2.2e-155
Identity = 278/724 (38.40%), Postives = 445/724 (61.46%), Query Frame = 1


Query: 22  PPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISY 81
           PP      +  L+ LS C+S+   KQ+HAHI++T +++ L +   L   S  S S ++SY
Sbjct: 5   PPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF--LFNLSVSSSSINLSY 64

Query: 82  AISLFNSIEEP-NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCA 141
           A+++F+SI  P    ++N  +R LS S  P   ++F+ R+ + G   + ++F  +LK+ +
Sbjct: 65  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 124

Query: 142 KLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTA 201
           K+++  EG ++H    K+  + D F+ T  ++MYA  G +N A+ VFD+ + RD +++  
Sbjct: 125 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 184

Query: 202 LIAGYALWGYMDRARQLFDEMPVKDVVSWNAM----IAGYAQMGRSKEALLLFEDMRKAN 261
           +I  Y  +G +D A +LF+EM   +V+    +    ++   + G  +    ++E + + +
Sbjct: 185 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 244

Query: 262 VPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTAR 321
           V  +   + ++++  A +  +D+       +  R    NL +  A++  YSKCG L  A+
Sbjct: 245 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR----NLFVSTAMVSGYSKCGRLDDAQ 304

Query: 322 ELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLG 381
            +FD   ++D++ W  MI  Y      +EAL +F EM  SG++P  ++  S++ +CA+LG
Sbjct: 305 VIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLG 364

Query: 382 AIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMIC 441
            +D  KW+H+ I+ N      S++ +LI++YAKCG + A R VF+ M  +++ SW++MI 
Sbjct: 365 ILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMIN 424

Query: 442 GLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKIS 501
            L+MHG+A  A  LF++M  + +EPNE+TFVG+L  C H+GLV+ G++ F+SM  +Y I+
Sbjct: 425 ALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNIT 484

Query: 502 PKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAER 561
           PK +HYGCM+DL GRA L  EA  ++++M V  +  IWGSL+ ACR HG +ELG+  A+R
Sbjct: 485 PKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKR 544

Query: 562 LFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLV 621
           + ELEPD+ GA VL+SNIYA   +W+DV  IR  + ++ + K  G + I+ +   HEFL+
Sbjct: 545 ILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLI 604

Query: 622 GDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGL 681
           GDK H QS +IY  L+EV  +LK+ G+V D   VL D++EE K+  +  HSEKLA+ FGL
Sbjct: 605 GDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGL 664

Query: 682 ISTKPGTP------IRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSC 735
           ++ +          IRI+KNLRVC +CH   KL+SK++ REII RDR RFH +K+G CSC
Sbjct: 665 MNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSC 722

[Close]

BLAST of Csa1G306800 vs. TrEMBL
Match: A0A0A0LU28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G306800 PE=4 SV=1)

HSP 1 Score: 1473.0 bits (3812), Expect = 0.0e+00
Identity = 734/734 (100.00%), Postives = 734/734 (100.00%), Query Frame = 1


Query: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT 60
           MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT
Sbjct: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT 60

Query: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120
           LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM
Sbjct: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120

Query: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180
           IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180

Query: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240
           NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG
Sbjct: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240

Query: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300
           RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN
Sbjct: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300

Query: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360
           ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP
Sbjct: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360

Query: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420
           TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420

Query: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480
           DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD
Sbjct: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480

Query: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540
           LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA
Sbjct: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540

Query: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600
           CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP
Sbjct: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600

Query: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE 660
           GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE
Sbjct: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE 660

Query: 661 GALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF 720
           GALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF
Sbjct: 661 GALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF 720

Query: 721 HHFKDGSCSCNDYW 735
           HHFKDGSCSCNDYW
Sbjct: 721 HHFKDGSCSCNDYW 734

[Close]

BLAST of Csa1G306800 vs. TrEMBL
Match: F6HF84_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00660 PE=4 SV=1)

HSP 1 Score: 1112.8 bits (2877), Expect = 0.0e+00
Identity = 542/736 (73.64%), Postives = 635/736 (86.28%), Query Frame = 1


Query: 1   MALSSPSLLLSP-SFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHN 60
           +A  SPSL++ P + H  P+SDPPY++LQ HPSL LLS C+S +  KQIH+ IIKTGLHN
Sbjct: 3   LASFSPSLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHN 62

Query: 61  TLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVR 120
           T FALSKLIEF A+S  G++SYA+ LF SIE+PN FIWN+MIRG S+S SP  A+ F+VR
Sbjct: 63  TQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVR 122

Query: 121 MIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 180
           M+  GVEPNSYTFPFLLKSCAK+ +  EGKQIH HVLKLG  SD F+HTSLINMYAQ+GE
Sbjct: 123 MLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGE 182

Query: 181 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 240
           +  A+LVF +S+ RDA+SFTALI GY L G +D AR+LF+E+PV+D VSWNAMIAGYAQ 
Sbjct: 183 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 242

Query: 241 GRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV 300
           GR +EAL  F++M++ANV PNEST+V+VLSACAQS +L+LGN +RSWIED GL SNL+LV
Sbjct: 243 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302

Query: 301 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 360
           NALIDMYSKCGDL  AR+LF+ + E+D+ISWNVMIGGY+HM SYKEALALFR+M  S VE
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362

Query: 361 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS-TSLSTSLIDLYAKCGNIVAARQ 420
           P ++TF+SILP+CA+LGA+DLGKWIHAYI+K F  ++ TSL TSLID+YAKCGNI AA+Q
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422

Query: 421 VFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGL 480
           VF GMK KSL SWNAMI GLAMHG A+ A ELF +M  +G EP++ITFVG+LSAC HAGL
Sbjct: 423 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482

Query: 481 VDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLL 540
           V+LG+Q FSSMV+DY ISPK QHYGCMIDLLGRAGLF+EAE+L++NME+KPDGAIWGSLL
Sbjct: 483 VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542

Query: 541 GACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKK 600
           GACR HG VELGE  A+ LFELEP+NPGAYVLLSNIYA AG+WDDVARIRT+LND+GMKK
Sbjct: 543 GACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602

Query: 601 VPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEW 660
           VPGC++IEVD+VVHEFLVGDKVH QS+DIY+ML+E+D+ L+  G V DTSEVLYDMDEEW
Sbjct: 603 VPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEW 662

Query: 661 KEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRN 720
           KEG+LSHHSEKLAIAFGLISTKP T IRI+KNLRVC NCHSA KLISKIFNREIIARDRN
Sbjct: 663 KEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRN 722

Query: 721 RFHHFKDGSCSCNDYW 735
           RFHHFKDGSCSC DYW
Sbjct: 723 RFHHFKDGSCSCMDYW 738

[Close]

BLAST of Csa1G306800 vs. TrEMBL
Match: A0A061GN82_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma cacao GN=TCM_038026 PE=4 SV=1)

HSP 1 Score: 1101.3 bits (2847), Expect = 0.0e+00
Identity = 539/733 (73.53%), Postives = 629/733 (85.81%), Query Frame = 1


Query: 1   MALSSPSLLLSP-SFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHN 60
           MAL S S+ +SP   H+LPSSDPPY++LQ HPSL LLSKC++I+T KQ+H HIIKTGLH+
Sbjct: 59  MALPSTSVSISPFPLHLLPSSDPPYKLLQNHPSLSLLSKCRTIQTLKQVHCHIIKTGLHH 118

Query: 61  TLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVR 120
           T FALSKLIEF AVS  GD+ YA+ LF SI+EPN  IWN+MIRG S+S SP L L F+V+
Sbjct: 119 TQFALSKLIEFCAVSPFGDLPYALLLFESIDEPNQVIWNTMIRGFSLSSSPGLTLEFYVK 178

Query: 121 MIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 180
           MI+SG+ PNSYTFPF+LKSCAK AS  EGKQIH  VLKLG  SD F+HTSLINMYAQ+GE
Sbjct: 179 MIWSGIVPNSYTFPFVLKSCAKTASTQEGKQIHGQVLKLGLESDAFVHTSLINMYAQNGE 238

Query: 181 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 240
             NA+LVFD+S+ RD +S+TALI GY   GYM+ AR+LFDE+P++DVVSWNAMIAGYAQ 
Sbjct: 239 FGNARLVFDKSHLRDTVSYTALITGYVSIGYMENARKLFDEIPIRDVVSWNAMIAGYAQT 298

Query: 241 GRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV 300
           G+ +EAL  FE+M  ANV PNEST+VSVLSACAQS +L+LG  +RSWI + GL SN+ L 
Sbjct: 299 GQHEEALAFFEEMIGANVVPNESTLVSVLSACAQSGSLELGTWVRSWINEHGLGSNIHLA 358

Query: 301 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 360
           NALIDMYSKCGDL TA +LF+ + +RDVISWNVMIGGYTHM  YKEAL LFR ML S +E
Sbjct: 359 NALIDMYSKCGDLDTAFDLFEGLQQRDVISWNVMIGGYTHMSYYKEALGLFRRMLRSNIE 418

Query: 361 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNF-NSVSTSLSTSLIDLYAKCGNIVAARQ 420
           P+++TFLS+LP+CA+LGA+DLGKWIHAYI+KNF NS + SL TSLID+YAKCG+I AA+Q
Sbjct: 419 PSDVTFLSVLPACANLGALDLGKWIHAYIDKNFQNSTNISLWTSLIDMYAKCGSIEAAQQ 478

Query: 421 VFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGL 480
           VF+GM+ K+LASWNAMI GLAMHG ADKA ELFS+M   G++P++ITFVG+LSAC HAGL
Sbjct: 479 VFNGMEQKNLASWNAMISGLAMHGLADKALELFSQMMGGGLKPDDITFVGVLSACTHAGL 538

Query: 481 VDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLL 540
           +DLG+Q+FSSMVQ+Y ISP  QHYGCM++LLGRAGLF+EAE+L+QNME+KPDGAIWGSLL
Sbjct: 539 LDLGRQYFSSMVQEYAISPDLQHYGCMVNLLGRAGLFDEAEALIQNMEMKPDGAIWGSLL 598

Query: 541 GACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKK 600
           GACR H RVELGE VA+RL ELEPDNPGAYVLLSNIYAGAG+WDDVARIRT LN++GMKK
Sbjct: 599 GACRVHKRVELGESVAQRLLELEPDNPGAYVLLSNIYAGAGRWDDVARIRTLLNNKGMKK 658

Query: 601 VPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEW 660
           VPGC++IEVD+VVHEFLV DKVHP+ ++IY ML EVD  L+  GFV DTSEV+ DMDEEW
Sbjct: 659 VPGCSSIEVDSVVHEFLVSDKVHPRCKEIYDMLNEVDTLLEKAGFVPDTSEVIRDMDEEW 718

Query: 661 KEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRN 720
           KEGALSHHSEKLAIAFGLISTKPGT IRI+KNLRVC NCHSATKLISKIFNREIIARDRN
Sbjct: 719 KEGALSHHSEKLAIAFGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 778

Query: 721 RFHHFKDGSCSCN 732
           RFHHFKDG    N
Sbjct: 779 RFHHFKDGVIGAN 791

[Close]

BLAST of Csa1G306800 vs. TrEMBL
Match: A0A061GN82_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma cacao GN=TCM_038026 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-03
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 1


Query: 300 NALIDMYSKC---GDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREML 355
           + L+ + S C   G L+  ++       RDVISWNV+IGGYTH   YKE L LFR ML
Sbjct: 797 STLVSVLSDCAQSGSLELGKQ-------RDVISWNVVIGGYTHTSHYKETLGLFRRML 847

HSP 2 Score: 40.0 bits (92), Expect = 1.4e+01
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 1


Query: 255 ANVPPNESTIVSVLSACAQSNALDLG 281
           ANV PN ST+VSVLS CAQS +L+LG
Sbjct: 790 ANVVPNASTLVSVLSDCAQSGSLELG 815

HSP 3 Score: 33.1 bits (74), Expect = 1.7e+03
Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 1


Query: 224 KDVVSWNAMIAGYAQMGRSKEALLLFEDM 253
           +DV+SWN +I GY      KE L LF  M
Sbjct: 818 RDVISWNVVIGGYTHTSHYKETLGLFRRM 846

HSP 4 Score: 1091.3 bits (2821), Expect = 0.0e+00
Identity = 530/736 (72.01%), Postives = 628/736 (85.33%), Query Frame = 1


Query: 1   MALSSPSLLLSPSF-HVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHN 60
           MAL   SL LSPS  H  PSSDPPY++LQ  PSL LLSKC +++  KQ+H+ IIKTGLHN
Sbjct: 1   MALPPSSLTLSPSILHFPPSSDPPYKLLQNQPSLALLSKCTNMQNIKQVHSQIIKTGLHN 60

Query: 61  TLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVR 120
           T FALSKLIE  AVS  GD+SYA+ +F +I EPN  IWN++IRG S+S SP +A+ F+VR
Sbjct: 61  TQFALSKLIEICAVSPFGDLSYALLVFETIREPNQVIWNNIIRGHSLSSSPVVAIKFYVR 120

Query: 121 MIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 180
           MI SG  PN+YTFPF+LKSCAK+++  EGKQIHAHVLKLG  SD F+HTSLINMYAQ+GE
Sbjct: 121 MILSGFVPNTYTFPFILKSCAKISAISEGKQIHAHVLKLGLESDPFVHTSLINMYAQNGE 180

Query: 181 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 240
           + +A+LVF++S+ RDA+S+TALI GYA  GY+D ARQLFDEMPV+DVVSWNAMIAGYAQ 
Sbjct: 181 LESARLVFNKSSLRDAVSYTALITGYASRGYLDDARQLFDEMPVRDVVSWNAMIAGYAQS 240

Query: 241 GRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV 300
           GR +EAL +F+ +R+ N  PNEST+V+VLSACA   +L+LGN + S IE  GL SNL + 
Sbjct: 241 GRYEEALAIFQKIREENFVPNESTVVTVLSACAHMGSLELGNWVCSLIEGHGLGSNLHVT 300

Query: 301 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 360
           NALIDMYSKCG L  AR+LF+ + +RDVISWNVMIGGYTH   YKEAL LFR+ML S +E
Sbjct: 301 NALIDMYSKCGGLVKARDLFESIEKRDVISWNVMIGGYTHTSDYKEALMLFRQMLQSNIE 360

Query: 361 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVST-SLSTSLIDLYAKCGNIVAARQ 420
           P ++TFLS+LP+CA+LGA+DLGKWIHAYI+KN   ++  SL TSLID+YAKCGNI AA Q
Sbjct: 361 PNDVTFLSVLPACAYLGALDLGKWIHAYIDKNHQKLNNVSLWTSLIDMYAKCGNIKAAEQ 420

Query: 421 VFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGL 480
           VFDGM  K+LASWNAMI GLAMHG+ADKA  LFS+M  +G++P++ITFVG+LSAC HAGL
Sbjct: 421 VFDGMGYKTLASWNAMISGLAMHGKADKALSLFSRMIGEGLQPDDITFVGVLSACNHAGL 480

Query: 481 VDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLL 540
           +D+G+Q+F++M+QDYKISPK QHYGCM+DLLGRAGLF+EAE+LL+ ME+KPD AIW SLL
Sbjct: 481 LDIGRQYFNAMIQDYKISPKLQHYGCMVDLLGRAGLFDEAEALLKTMEMKPDAAIWTSLL 540

Query: 541 GACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKK 600
           GACR HGR+ELGE VA+ L ELEP+NPGAYVLLSN+YAGAG+WDDVA IRTRLND+GMKK
Sbjct: 541 GACRVHGRLELGESVAKHLLELEPENPGAYVLLSNMYAGAGRWDDVATIRTRLNDKGMKK 600

Query: 601 VPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEW 660
           VPGC++IEV +VVHEFLVGDKVHPQS+ IY ML+E+D  L+  GFV DTSEVLYDMDEEW
Sbjct: 601 VPGCSSIEVGSVVHEFLVGDKVHPQSKHIYEMLDEIDALLEKSGFVPDTSEVLYDMDEEW 660

Query: 661 KEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRN 720
           KEGALSHHSEKLAIA+GLISTKPGT IRI+KNLRVC NCHSATKLISKIFNREIIARDRN
Sbjct: 661 KEGALSHHSEKLAIAYGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 720

Query: 721 RFHHFKDGSCSCNDYW 735
           RFHHFKDG+CSCNDYW
Sbjct: 721 RFHHFKDGNCSCNDYW 736

[Close]

BLAST of Csa1G306800 vs. TrEMBL
Match: W9RPK7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005950 PE=4 SV=1)

HSP 1 Score: 1088.2 bits (2813), Expect = 0.0e+00
Identity = 527/737 (71.51%), Postives = 630/737 (85.48%), Query Frame = 1


Query: 1   MALSSPSLL--LSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLH 60
           MA S PS L  L  +FHV PSSDPPY++LQ HPSL LLSKC+S++T KQIH HIIKTGLH
Sbjct: 1   MAFSPPSPLPILPSTFHVPPSSDPPYKLLQSHPSLNLLSKCKSLQTLKQIHTHIIKTGLH 60

Query: 61  NTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFV 120
            T FALSKL+EF ++S  GD+SYA+++ ++IEEPN FIWN+++RG S+   PA A+ F+V
Sbjct: 61  KTQFALSKLVEFCSLSPFGDLSYALAILDTIEEPNRFIWNTVLRGHSLRSDPAKAIDFYV 120

Query: 121 RMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSG 180
           RM+ SGVEPNS+TFP +LK C K  +AHEGKQ+HA +L+LG  +DVFI TSLINMYAQ+G
Sbjct: 121 RMVVSGVEPNSHTFPVILKCCTKFGAAHEGKQLHAQILRLGLDADVFISTSLINMYAQNG 180

Query: 181 EMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQ 240
            ++NA+LVFD+S  R+A+SFTALI GYAL G M+ AR +FDEMP +DVV+WNA+I+GY Q
Sbjct: 181 MLDNARLVFDKSPVRNAVSFTALITGYALRGRMEEARGIFDEMPTRDVVAWNAIISGYTQ 240

Query: 241 MGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKL 300
             +  EAL  F++M KANV PNES+ V +LSACAQS  L+ GN +RSWI DRGL S+L++
Sbjct: 241 SAQFDEALAFFKEMVKANVKPNESSFVVILSACAQSGNLESGNWVRSWIGDRGLGSSLRI 300

Query: 301 VNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGV 360
           VNAL+DMYSKCG+L TAR+LFD + ER+V+SWN+MIGGYTHM  YKEALALFR ML S V
Sbjct: 301 VNALVDMYSKCGNLDTARDLFDGLRERNVVSWNIMIGGYTHMSDYKEALALFRLMLRSDV 360

Query: 361 EPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNS-VSTSLSTSLIDLYAKCGNIVAAR 420
           EP ++T L++LP+CAHLGA+DLGKWIHAYI+K F++  + SL TSLID+YAK GNI AA+
Sbjct: 361 EPNDVTLLAVLPACAHLGALDLGKWIHAYIDKKFHTFTNNSLWTSLIDMYAKSGNIDAAK 420

Query: 421 QVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAG 480
           QVFDGM+I+SLASWNAMI GLA+HG A  AFELFSKM+ +G +P++I+FV +LSAC +AG
Sbjct: 421 QVFDGMEIRSLASWNAMISGLAVHGHASLAFELFSKMTDEGFKPDDISFVAVLSACNYAG 480

Query: 481 LVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSL 540
           L+ +G+Q+FSSMVQDY +SPK QHYG MIDLLGRAGLF+EAESL++NME+KPDGAIWGSL
Sbjct: 481 LLGIGRQYFSSMVQDYNVSPKLQHYGIMIDLLGRAGLFDEAESLIKNMEMKPDGAIWGSL 540

Query: 541 LGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMK 600
           LGACR H RVELGE VAERL ELEP NPG YVLLSNIYAGA +WDDVARIRT+L+D+GMK
Sbjct: 541 LGACRAHRRVELGEFVAERLSELEPGNPGPYVLLSNIYAGASRWDDVARIRTKLHDKGMK 600

Query: 601 KVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEE 660
           KVPGCT+IEVDNVVHEFLVGDKVHP SEDIY+ML E+D  L + GFV DTSEVLYDMDE+
Sbjct: 601 KVPGCTSIEVDNVVHEFLVGDKVHPLSEDIYKMLNEIDRLLDISGFVPDTSEVLYDMDED 660

Query: 661 WKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDR 720
            KEG+LSHHSEKLAIAFGLISTKPGT IRI+KNLRVC NCHSATKLISKIFNREIIARDR
Sbjct: 661 LKEGSLSHHSEKLAIAFGLISTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDR 720

Query: 721 NRFHHFKDGSCSCNDYW 735
           NRFHHFK+GSCSCNDYW
Sbjct: 721 NRFHHFKNGSCSCNDYW 737

[Close]

BLAST of Csa1G306800 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 961.4 bits (2484), Expect = 3.1e-280
Identity = 466/740 (62.97%), Postives = 588/740 (79.46%), Query Frame = 1


Query: 1   MALSSPSLLLSPS--FHVLPSS-DPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGL 60
           M   SP  + S S  FH LPSS DPPY  ++ HPSL LL  C+++++ + IHA +IK GL
Sbjct: 2   MLSCSPLTVPSSSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGL 61

Query: 61  HNTLFALSKLIEFSAVSRSGD-ISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVF 120
           HNT +ALSKLIEF  +S   + + YAIS+F +I+EPNL IWN+M RG ++S  P  AL  
Sbjct: 62  HNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKL 121

Query: 121 FVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQ 180
           +V MI  G+ PNSYTFPF+LKSCAK  +  EG+QIH HVLKLG   D+++HTSLI+MY Q
Sbjct: 122 YVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQ 181

Query: 181 SGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGY 240
           +G + +A  VFD+S  RD +S+TALI GYA  GY++ A++LFDE+PVKDVVSWNAMI+GY
Sbjct: 182 NGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGY 241

Query: 241 AQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNL 300
           A+ G  KEAL LF+DM K NV P+EST+V+V+SACAQS +++LG  +  WI+D G  SNL
Sbjct: 242 AETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNL 301

Query: 301 KLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLAS 360
           K+VNALID+YSKCG+L+TA  LF+ +  +DVISWN +IGGYTHM  YKEAL LF+EML S
Sbjct: 302 KIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRS 361

Query: 361 GVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS--TSLSTSLIDLYAKCGNIV 420
           G  P ++T LSILP+CAHLGAID+G+WIH YI+K    V+  +SL TSLID+YAKCG+I 
Sbjct: 362 GETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIE 421

Query: 421 AARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACK 480
           AA QVF+ +  KSL+SWNAMI G AMHG+AD +F+LFS+M   GI+P++ITFVG+LSAC 
Sbjct: 422 AAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACS 481

Query: 481 HAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIW 540
           H+G++DLG+  F +M QDYK++PK +HYGCMIDLLG +GLF+EAE ++  ME++PDG IW
Sbjct: 482 HSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIW 541

Query: 541 GSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDR 600
            SLL AC+ HG VELGE  AE L ++EP+NPG+YVLLSNIYA AG+W++VA+ R  LND+
Sbjct: 542 CSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDK 601

Query: 601 GMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDM 660
           GMKKVPGC++IE+D+VVHEF++GDK HP++ +IY MLEE++  L+  GFV DTSEVL +M
Sbjct: 602 GMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEM 661

Query: 661 DEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIA 720
           +EEWKEGAL HHSEKLAIAFGLISTKPGT + I+KNLRVCRNCH ATKLISKI+ REIIA
Sbjct: 662 EEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIA 721

Query: 721 RDRNRFHHFKDGSCSCNDYW 735
           RDR RFHHF+DG CSCNDYW
Sbjct: 722 RDRTRFHHFRDGVCSCNDYW 741

[Close]

BLAST of Csa1G306800 vs. TAIR10
Match: AT3G12770.1 (AT3G12770.1 mitochondrial editing factor 22)

HSP 1 Score: 564.7 bits (1454), Expect = 8.4e-161
Identity = 299/732 (40.85%), Postives = 439/732 (59.97%), Query Frame = 1


Query: 3   LSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLF 62
           L+SP L  +   H    SD  Y  L +  + K           KQIHA ++  GL  + F
Sbjct: 7   LASPLLYTNSGIH----SDSFYASLIDSATHKA--------QLKQIHARLLVLGLQFSGF 66

Query: 63  ALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIY 122
            ++KLI  S  S  GDI++A  +F+ +  P +F WN++IRG S +     AL+ +  M  
Sbjct: 67  LITKLIHAS--SSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQL 126

Query: 123 SGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNN 182
           + V P+S+TFP LLK+C+ L+    G+ +HA V +LGF +DVF+   LI +YA+   + +
Sbjct: 127 ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS 186

Query: 183 AQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRS 242
           A+ VF+                                +P + +VSW A+++ YAQ G  
Sbjct: 187 ARTVFEGL-----------------------------PLPERTIVSWTAIVSAYAQNGEP 246

Query: 243 KEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNAL 302
            EAL +F  MRK +V P+   +VSVL+A      L  G S+ + +   GL     L+ +L
Sbjct: 247 MEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISL 306

Query: 303 IDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTE 362
             MY+KCG + TA+ LFD M   ++I WN MI GY      +EA+ +F EM+   V P  
Sbjct: 307 NTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDT 366

Query: 363 ITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDG 422
           I+  S + +CA +G+++  + ++ Y+ ++       +S++LID++AKCG++  AR VFD 
Sbjct: 367 ISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDR 426

Query: 423 MKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLG 482
              + +  W+AMI G  +HG+A +A  L+  M   G+ PN++TF+G+L AC H+G+V  G
Sbjct: 427 TLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG 486

Query: 483 QQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACR 542
             FF+ M  D+KI+P+ QHY C+IDLLGRAG  ++A  +++ M V+P   +WG+LL AC+
Sbjct: 487 WWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACK 546

Query: 543 DHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGC 602
            H  VELGE  A++LF ++P N G YV LSN+YA A  WD VA +R R+ ++G+ K  GC
Sbjct: 547 KHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGC 606

Query: 603 TTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGA 662
           + +EV   +  F VGDK HP+ E+I R +E ++ +LK  GFVA+    L+D+++E  E  
Sbjct: 607 SWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEET 666

Query: 663 LSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHH 722
           L  HSE++AIA+GLIST  GTP+RI KNLR C NCH+ATKLISK+ +REI+ RD NRFHH
Sbjct: 667 LCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHH 694

Query: 723 FKDGSCSCNDYW 735
           FKDG CSC DYW
Sbjct: 727 FKDGVCSCGDYW 694

[Close]

BLAST of Csa1G306800 vs. TAIR10
Match: AT2G22070.1 (AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein)

HSP 1 Score: 553.1 bits (1424), Expect = 2.5e-157
Identity = 293/699 (41.92%), Postives = 411/699 (58.80%), Query Frame = 1


Query: 71  SAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSY 130
           SA S+ GD+      F+ + + +   W +MI G         A+     M+  G+EP  +
Sbjct: 88  SAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQF 147

Query: 131 TFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQS 190
           T   +L S A       GK++H+ ++KLG   +V +  SL+NMYA+ G+   A+ VFD+ 
Sbjct: 148 TLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRM 207

Query: 191 NFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFE 250
             RD  S+ A+IA +   G MD A   F++M  +D+V+WN+MI+G+ Q G    AL +F 
Sbjct: 208 VVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFS 267

Query: 251 DM-RKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKC 310
            M R + + P+  T+ SVLSACA    L +G  + S I   G   +  ++NALI MYS+C
Sbjct: 268 KMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRC 327

Query: 311 GDLQTAREL---------------------------------FDDMLERDVISWNVMIGG 370
           G ++TAR L                                 F  + +RDV++W  MI G
Sbjct: 328 GGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVG 387

Query: 371 YTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS 430
           Y    SY EA+ LFR M+  G  P   T  ++L   + L ++  GK IH    K+    S
Sbjct: 388 YEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYS 447

Query: 431 TSLSTSLIDLYAKCGNIVAARQVFDGMKI-KSLASWNAMICGLAMHGQADKAFELFSKMS 490
            S+S +LI +YAK GNI +A + FD ++  +   SW +MI  LA HG A++A ELF  M 
Sbjct: 448 VSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETML 507

Query: 491 SDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLF 550
            +G+ P+ IT+VG+ SAC HAGLV+ G+Q+F  M    KI P   HY CM+DL GRAGL 
Sbjct: 508 MEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLL 567

Query: 551 EEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIY 610
           +EA+  ++ M ++PD   WGSLL ACR H  ++LG++ AERL  LEP+N GAY  L+N+Y
Sbjct: 568 QEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLY 627

Query: 611 AGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVD 670
           +  GKW++ A+IR  + D  +KK  G + IEV + VH F V D  HP+  +IY  ++++ 
Sbjct: 628 SACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIW 687

Query: 671 EQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCR 730
           +++K  G+V DT+ VL+D++EE KE  L HHSEKLAIAFGLIST   T +RI+KNLRVC 
Sbjct: 688 DEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCN 747

Query: 731 NCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 735
           +CH+A K ISK+  REII RD  RFHHFKDG CSC DYW
Sbjct: 748 DCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786

HSP 2 Score: 148.3 bits (373), Expect = 1.9e-35
Identity = 73/219 (33.33%), Postives = 126/219 (57.53%), Query Frame = 1


Query: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194
           L KS  K       + +H  V+K G +  V++  +L+N+Y+++G   +A+ +FD+   R 
Sbjct: 20  LQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRT 79

Query: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254
           A S+  +++ Y+  G MD   + FD++P +D VSW  MI GY  +G+  +A+ +  DM K
Sbjct: 80  AFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK 139

Query: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314
             + P + T+ +VL++ A +  ++ G  + S+I   GL  N+ + N+L++MY+KCGD   
Sbjct: 140 EGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM 199

Query: 315 ARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREM 354
           A+ +FD M+ RD+ SWN MI  +  +     A+A F +M
Sbjct: 200 AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM 238

HSP 3 Score: 141.0 bits (354), Expect = 3.0e-33
Identity = 100/390 (25.64%), Postives = 178/390 (45.64%), Query Frame = 1


Query: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194
           L KS  K       + +H  V+K G +  V++  +L+N+Y+++G   +A+ +FD+   R 
Sbjct: 20  LQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRT 79

Query: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGR------------- 254
           A S+  +++ Y+  G MD   + FD++P +D VSW  MI GY  +G+             
Sbjct: 80  AFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVK 139

Query: 255 ---------------SKEALLLFEDMRKAN---VPPNESTIVSVLSACAQSNALDLGNSM 314
                          S  A    E  +K +   V       VSV ++     A      M
Sbjct: 140 EGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMM 199

Query: 315 RSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSY 374
             ++ DR +  ++   NA+I ++ + G +  A   F+ M ERD+++WN MI G+      
Sbjct: 200 AKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYD 259

Query: 375 KEALALFREMLA-SGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTS 434
             AL +F +ML  S + P   T  S+L +CA+L  + +GK IH++I      +S  +  +
Sbjct: 260 LRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNA 319

Query: 435 LIDLYAKCGNIVAARQVFD--GMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIE 491
           LI +Y++CG +  AR++ +  G K   +  + A++ G    G  ++A  +F  +    + 
Sbjct: 320 LISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDV- 379

HSP 4 Score: 46.6 bits (109), Expect = 7.7e-05
Identity = 29/141 (20.57%), Postives = 63/141 (44.68%), Query Frame = 1


Query: 360 PTEITFLSILPSCAHLGAIDLGK--------WIHAYINKNFNSVSTSLSTSLIDLYAKCG 419
           P  ++  ++L  C +L    + K         +H  + K+    S  L  +L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63

Query: 420 NIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILS 479
             + AR++FD M +++  SWN ++   +  G  D   E F ++     + + +++  ++ 
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP----QRDSVSWTTMIV 123

Query: 480 ACKHAGLVDLGQQFFSSMVQD 493
             K+ G      +    MV++
Sbjct: 124 GYKNIGQYHKAIRVMGDMVKE 140

[Close]

BLAST of Csa1G306800 vs. TAIR10
Match: AT2G29760.1 (AT2G29760.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 551.6 bits (1420), Expect = 7.3e-157
Identity = 275/709 (38.79%), Postives = 442/709 (62.34%), Query Frame = 1


Query: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92
           + L+ +C S+R  KQ H H+I+TG  +  ++ SKL   +A+S    + YA  +F+ I +P
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIY-SGVEPNSYTFPFLLKSCAKLASAHEGKQI 152
           N F WN++IR  +    P L++  F+ M+  S   PN YTFPFL+K+ A+++S   G+ +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 153 HAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYM 212
           H   +K    SDVF+  SLI+ Y   G++++A  VF     +D +S+ ++I G+   G  
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 213 DRARQLFDEMPVKDV----VSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSV 272
           D+A +LF +M  +DV    V+   +++  A++   +    +   + +  V  N +   ++
Sbjct: 214 DKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAM 273

Query: 273 LSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDV 332
           L    +  +++    +   +E++   +       ++D Y+   D + ARE+ + M ++D+
Sbjct: 274 LDMYTKCGSIEDAKRLFDAMEEKDNVT----WTTMLDGYAISEDYEAAREVLNSMPQKDI 333

Query: 333 ISWNVMIGGYTHMCSYKEALALFREM-LASGVEPTEITFLSILPSCAHLGAIDLGKWIHA 392
           ++WN +I  Y       EAL +F E+ L   ++  +IT +S L +CA +GA++LG+WIH+
Sbjct: 334 VAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 393

Query: 393 YINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADK 452
           YI K+   ++  ++++LI +Y+KCG++  +R+VF+ ++ + +  W+AMI GLAMHG  ++
Sbjct: 394 YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNE 453

Query: 453 AFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMI 512
           A ++F KM    ++PN +TF  +  AC H GLVD  +  F  M  +Y I P+ +HY C++
Sbjct: 454 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIV 513

Query: 513 DLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPG 572
           D+LGR+G  E+A   ++ M + P  ++WG+LLGAC+ H  + L E+   RL ELEP N G
Sbjct: 514 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDG 573

Query: 573 AYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSED 632
           A+VLLSNIYA  GKW++V+ +R  +   G+KK PGC++IE+D ++HEFL GD  HP SE 
Sbjct: 574 AHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 633

Query: 633 IYRMLEEVDEQLKVFGFVADTSEVLYDM-DEEWKEGALSHHSEKLAIAFGLISTKPGTPI 692
           +Y  L EV E+LK  G+  + S+VL  + +EE KE +L+ HSEKLAI +GLIST+    I
Sbjct: 634 VYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVI 693

Query: 693 RIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 735
           R+IKNLRVC +CHS  KLIS++++REII RDR RFHHF++G CSCND+W
Sbjct: 694 RVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738

[Close]

BLAST of Csa1G306800 vs. TAIR10
Match: AT4G14820.1 (AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 550.8 bits (1418), Expect = 1.3e-156
Identity = 278/724 (38.40%), Postives = 445/724 (61.46%), Query Frame = 1


Query: 22  PPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISY 81
           PP      +  L+ LS C+S+   KQ+HAHI++T +++ L +   L   S  S S ++SY
Sbjct: 5   PPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSF--LFNLSVSSSSINLSY 64

Query: 82  AISLFNSIEEP-NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCA 141
           A+++F+SI  P    ++N  +R LS S  P   ++F+ R+ + G   + ++F  +LK+ +
Sbjct: 65  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 124

Query: 142 KLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTA 201
           K+++  EG ++H    K+  + D F+ T  ++MYA  G +N A+ VFD+ + RD +++  
Sbjct: 125 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 184

Query: 202 LIAGYALWGYMDRARQLFDEMPVKDVVSWNAM----IAGYAQMGRSKEALLLFEDMRKAN 261
           +I  Y  +G +D A +LF+EM   +V+    +    ++   + G  +    ++E + + +
Sbjct: 185 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 244

Query: 262 VPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTAR 321
           V  +   + ++++  A +  +D+       +  R    NL +  A++  YSKCG L  A+
Sbjct: 245 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR----NLFVSTAMVSGYSKCGRLDDAQ 304

Query: 322 ELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLG 381
            +FD   ++D++ W  MI  Y      +EAL +F EM  SG++P  ++  S++ +CA+LG
Sbjct: 305 VIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLG 364

Query: 382 AIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMIC 441
            +D  KW+H+ I+ N      S++ +LI++YAKCG + A R VF+ M  +++ SW++MI 
Sbjct: 365 ILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMIN 424

Query: 442 GLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKIS 501
            L+MHG+A  A  LF++M  + +EPNE+TFVG+L  C H+GLV+ G++ F+SM  +Y I+
Sbjct: 425 ALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNIT 484

Query: 502 PKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAER 561
           PK +HYGCM+DL GRA L  EA  ++++M V  +  IWGSL+ ACR HG +ELG+  A+R
Sbjct: 485 PKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKR 544

Query: 562 LFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLV 621
           + ELEPD+ GA VL+SNIYA   +W+DV  IR  + ++ + K  G + I+ +   HEFL+
Sbjct: 545 ILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLI 604

Query: 622 GDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGL 681
           GDK H QS +IY  L+EV  +LK+ G+V D   VL D++EE K+  +  HSEKLA+ FGL
Sbjct: 605 GDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGL 664

Query: 682 ISTKPGTP------IRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSC 735
           ++ +          IRI+KNLRVC +CH   KL+SK++ REII RDR RFH +K+G CSC
Sbjct: 665 MNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSC 722

[Close]

BLAST of Csa1G306800 vs. NCBI nr
Match: gi|449464596|ref|XP_004150015.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Cucumis sativus])

HSP 1 Score: 1473.0 bits (3812), Expect = 0.0e+00
Identity = 734/734 (100.00%), Postives = 734/734 (100.00%), Query Frame = 1


Query: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT 60
           MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT
Sbjct: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT 60

Query: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120
           LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM
Sbjct: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120

Query: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180
           IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180

Query: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240
           NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG
Sbjct: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240

Query: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300
           RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN
Sbjct: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300

Query: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360
           ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP
Sbjct: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360

Query: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420
           TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420

Query: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480
           DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD
Sbjct: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480

Query: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540
           LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA
Sbjct: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540

Query: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600
           CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP
Sbjct: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600

Query: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE 660
           GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE
Sbjct: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE 660

Query: 661 GALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF 720
           GALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF
Sbjct: 661 GALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF 720

Query: 721 HHFKDGSCSCNDYW 735
           HHFKDGSCSCNDYW
Sbjct: 721 HHFKDGSCSCNDYW 734

[Close]

BLAST of Csa1G306800 vs. NCBI nr
Match: gi|659130137|ref|XP_008465018.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070 isoform X2 [Cucumis melo])

HSP 1 Score: 1435.2 bits (3714), Expect = 0.0e+00
Identity = 713/734 (97.14%), Postives = 723/734 (98.50%), Query Frame = 1


Query: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT 60
           MALSSPSLLLSPSFHVLPSSDPPYRVLQEHP+LKLLSKCQ+IRTFKQIHAHIIKTGLHNT
Sbjct: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPALKLLSKCQNIRTFKQIHAHIIKTGLHNT 60

Query: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120
            FALSKLIEFSAVSRSGDISYAISLF+SIE+PNLFIWNSMIRGLSMSLSP LALVFFVRM
Sbjct: 61  HFALSKLIEFSAVSRSGDISYAISLFSSIEDPNLFIWNSMIRGLSMSLSPVLALVFFVRM 120

Query: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180
           IYSGVEPNSYTFPFLLKSCAKLASA EGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180

Query: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240
           NNAQL+FDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG
Sbjct: 181 NNAQLIFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240

Query: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300
           RSKEALLLFEDMRK NVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGL SNLKLVN
Sbjct: 241 RSKEALLLFEDMRKENVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLRSNLKLVN 300

Query: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360
           ALIDMYSKCGDL TARELFDDM ERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP
Sbjct: 301 ALIDMYSKCGDLPTARELFDDMPERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360

Query: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420
           TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420

Query: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480
           DGM IKSLASWNAMICGLAMHGQAD+AFELFSKMSSDGIEPNEITFVG+LSACKHAGLVD
Sbjct: 421 DGMNIKSLASWNAMICGLAMHGQADEAFELFSKMSSDGIEPNEITFVGVLSACKHAGLVD 480

Query: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540
           LG Q FSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESL+QNMEVKPDGAIWGSLLGA
Sbjct: 481 LGHQIFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLIQNMEVKPDGAIWGSLLGA 540

Query: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600
           CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP
Sbjct: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600

Query: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE 660
           GCTTIEVDNVVHEFLVGDKVHPQSEDIY+MLEEVD+QLKVFGFVADTSEVLYDMDEEWKE
Sbjct: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYKMLEEVDKQLKVFGFVADTSEVLYDMDEEWKE 660

Query: 661 GALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF 720
           G LSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF
Sbjct: 661 GTLSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF 720

Query: 721 HHFKDGSCSCNDYW 735
           HHFKDGSCSCNDYW
Sbjct: 721 HHFKDGSCSCNDYW 734

[Close]

BLAST of Csa1G306800 vs. NCBI nr
Match: gi|659130135|ref|XP_008465017.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070 isoform X1 [Cucumis melo])

HSP 1 Score: 1320.8 bits (3417), Expect = 0.0e+00
Identity = 660/681 (96.92%), Postives = 670/681 (98.38%), Query Frame = 1


Query: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNT 60
           MALSSPSLLLSPSFHVLPSSDPPYRVLQEHP+LKLLSKCQ+IRTFKQIHAHIIKTGLHNT
Sbjct: 1   MALSSPSLLLSPSFHVLPSSDPPYRVLQEHPALKLLSKCQNIRTFKQIHAHIIKTGLHNT 60

Query: 61  LFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRM 120
            FALSKLIEFSAVSRSGDISYAISLF+SIE+PNLFIWNSMIRGLSMSLSP LALVFFVRM
Sbjct: 61  HFALSKLIEFSAVSRSGDISYAISLFSSIEDPNLFIWNSMIRGLSMSLSPVLALVFFVRM 120

Query: 121 IYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180
           IYSGVEPNSYTFPFLLKSCAKLASA EGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM
Sbjct: 121 IYSGVEPNSYTFPFLLKSCAKLASAREGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEM 180

Query: 181 NNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240
           NNAQL+FDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG
Sbjct: 181 NNAQLIFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMG 240

Query: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300
           RSKEALLLFEDMRK NVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGL SNLKLVN
Sbjct: 241 RSKEALLLFEDMRKENVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLRSNLKLVN 300

Query: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360
           ALIDMYSKCGDL TARELFDDM ERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP
Sbjct: 301 ALIDMYSKCGDLPTARELFDDMPERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360

Query: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420
           TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420

Query: 421 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480
           DGM IKSLASWNAMICGLAMHGQAD+AFELFSKMSSDGIEPNEITFVG+LSACKHAGLVD
Sbjct: 421 DGMNIKSLASWNAMICGLAMHGQADEAFELFSKMSSDGIEPNEITFVGVLSACKHAGLVD 480

Query: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540
           LG Q FSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESL+QNMEVKPDGAIWGSLLGA
Sbjct: 481 LGHQIFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLIQNMEVKPDGAIWGSLLGA 540

Query: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600
           CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP
Sbjct: 541 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 600

Query: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE 660
           GCTTIEVDNVVHEFLVGDKVHPQSEDIY+MLEEVD+QLKVFGFVADTSEVLYDMDEEWKE
Sbjct: 601 GCTTIEVDNVVHEFLVGDKVHPQSEDIYKMLEEVDKQLKVFGFVADTSEVLYDMDEEWKE 660

Query: 661 GALSHHSEKLAIAFGLISTKP 682
           G LSHHSEKLAIAFGLISTKP
Sbjct: 661 GTLSHHSEKLAIAFGLISTKP 681

[Close]

BLAST of Csa1G306800 vs. NCBI nr
Match: gi|1009110349|ref|XP_015895115.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 1122.1 bits (2901), Expect = 0.0e+00
Identity = 544/734 (74.11%), Postives = 641/734 (87.33%), Query Frame = 1


Query: 4   SSPSLLLSPS-FHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLF 63
           SS SL +S S FHVLP SDPPY++LQ HPSL+LLS C+S +  KQ+H+HIIKTGLHNT F
Sbjct: 5   SSFSLPISASTFHVLPDSDPPYKLLQGHPSLELLSNCKSTQGLKQVHSHIIKTGLHNTQF 64

Query: 64  ALSKLIEFSAVSRSG-DISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMI 123
           ALSKL+EF  VS  G D+SYA+ +F +IEEPN FIWN++IRG S+S SP LA++F+VRM+
Sbjct: 65  ALSKLVEFCVVSPLGSDLSYALLVFETIEEPNQFIWNTIIRGHSLSSSPLLAILFYVRML 124

Query: 124 YSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMN 183
            SGVEPNSYTFPFLLKSCAK+A+ HEGKQ+HA +LKLGF SD FIHTSLINMYAQ+ +++
Sbjct: 125 LSGVEPNSYTFPFLLKSCAKVAATHEGKQLHAQILKLGFESDPFIHTSLINMYAQNDQLD 184

Query: 184 NAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGR 243
           NA+LVFD+S FRDA+SFTALI GYA  G MD AR+LFDE+P++DVVSWNAMI+GY Q GR
Sbjct: 185 NARLVFDKSVFRDAVSFTALITGYASRGSMDDARRLFDEIPIRDVVSWNAMISGYTQCGR 244

Query: 244 SKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNA 303
            +EAL +F +M +ANVPPN+ST++++LSACAQS +L+LGN +RSW+ED G  SNL+LVNA
Sbjct: 245 FEEALTMFHEMSEANVPPNDSTMLTLLSACAQSGSLELGNWVRSWVEDYGRGSNLRLVNA 304

Query: 304 LIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPT 363
           LIDMY+KCG L  AR+LFD + +RDVISWNVMIGGY+HM  YKEALALFR ML S +EP 
Sbjct: 305 LIDMYAKCGALDIARDLFDGINQRDVISWNVMIGGYSHMSHYKEALALFRLMLRSNIEPN 364

Query: 364 EITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVST-SLSTSLIDLYAKCGNIVAARQVF 423
           ++TFL +LP+CAHLGA+DLGKWIHAYI+KNF S++  S  TSLID+YAKCGNI AA+QVF
Sbjct: 365 DVTFLGVLPACAHLGALDLGKWIHAYIDKNFKSLTNISFWTSLIDMYAKCGNIEAAKQVF 424

Query: 424 DGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 483
           D MK ++LASWNAMI G A+HG A  A E FSKM ++G +P++ITFVGILSAC HAGL+D
Sbjct: 425 DSMKSRNLASWNAMISGFAVHGHAYMALEFFSKMINEGFKPDDITFVGILSACNHAGLLD 484

Query: 484 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 543
           LG ++F+SMV+DY ISPK QHYGC+IDLLGRAG F+EAE+L++NME+KPDGAIWGSLLGA
Sbjct: 485 LGWKYFNSMVRDYNISPKLQHYGCLIDLLGRAGKFDEAETLMKNMEMKPDGAIWGSLLGA 544

Query: 544 CRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVP 603
           CR HGRVELG+ VAE LFELEP+N GAYVLLSNIYAGAG+WDDVAR+RTRLND+GMKKVP
Sbjct: 545 CRVHGRVELGKYVAEHLFELEPENAGAYVLLSNIYAGAGRWDDVARVRTRLNDQGMKKVP 604

Query: 604 GCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKE 663
           GCT+IEVD+VVHEFLVGDKVHP+S DIY ML E+D  L + GFV DTSEVLYDMDEEWKE
Sbjct: 605 GCTSIEVDSVVHEFLVGDKVHPKSRDIYNMLNEIDRLLGMAGFVPDTSEVLYDMDEEWKE 664

Query: 664 GALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRF 723
           GALSHHSEKLAIAFGLISTKPG+ IRI+KNLRVC NCHSATKLISKIFNREIIARDRNRF
Sbjct: 665 GALSHHSEKLAIAFGLISTKPGSTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRF 724

Query: 724 HHFKDGSCSCNDYW 735
           HHFKDGSCSCNDYW
Sbjct: 725 HHFKDGSCSCNDYW 738

[Close]

BLAST of Csa1G306800 vs. NCBI nr
Match: gi|731371940|ref|XP_002274432.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera])

HSP 1 Score: 1112.8 bits (2877), Expect = 0.0e+00
Identity = 542/736 (73.64%), Postives = 635/736 (86.28%), Query Frame = 1


Query: 1   MALSSPSLLLSP-SFHVLPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHN 60
           +A  SPSL++ P + H  P+SDPPY++LQ HPSL LLS C+S +  KQIH+ IIKTGLHN
Sbjct: 8   LASFSPSLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHN 67

Query: 61  TLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVR 120
           T FALSKLIEF A+S  G++SYA+ LF SIE+PN FIWN+MIRG S+S SP  A+ F+VR
Sbjct: 68  TQFALSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVR 127

Query: 121 MIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGE 180
           M+  GVEPNSYTFPFLLKSCAK+ +  EGKQIH HVLKLG  SD F+HTSLINMYAQ+GE
Sbjct: 128 MLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGE 187

Query: 181 MNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQM 240
           +  A+LVF +S+ RDA+SFTALI GY L G +D AR+LF+E+PV+D VSWNAMIAGYAQ 
Sbjct: 188 LGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQS 247

Query: 241 GRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV 300
           GR +EAL  F++M++ANV PNEST+V+VLSACAQS +L+LGN +RSWIED GL SNL+LV
Sbjct: 248 GRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 307

Query: 301 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 360
           NALIDMYSKCGDL  AR+LF+ + E+D+ISWNVMIGGY+HM SYKEALALFR+M  S VE
Sbjct: 308 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 367

Query: 361 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVS-TSLSTSLIDLYAKCGNIVAARQ 420
           P ++TF+SILP+CA+LGA+DLGKWIHAYI+K F  ++ TSL TSLID+YAKCGNI AA+Q
Sbjct: 368 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 427

Query: 421 VFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGL 480
           VF GMK KSL SWNAMI GLAMHG A+ A ELF +M  +G EP++ITFVG+LSAC HAGL
Sbjct: 428 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 487

Query: 481 VDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLL 540
           V+LG+Q FSSMV+DY ISPK QHYGCMIDLLGRAGLF+EAE+L++NME+KPDGAIWGSLL
Sbjct: 488 VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 547

Query: 541 GACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKK 600
           GACR HG VELGE  A+ LFELEP+NPGAYVLLSNIYA AG+WDDVARIRT+LND+GMKK
Sbjct: 548 GACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 607

Query: 601 VPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEW 660
           VPGC++IEVD+VVHEFLVGDKVH QS+DIY+ML+E+D+ L+  G V DTSEVLYDMDEEW
Sbjct: 608 VPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEW 667

Query: 661 KEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRN 720
           KEG+LSHHSEKLAIAFGLISTKP T IRI+KNLRVC NCHSA KLISKIFNREIIARDRN
Sbjct: 668 KEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRN 727

Query: 721 RFHHFKDGSCSCNDYW 735
           RFHHFKDGSCSC DYW
Sbjct: 728 RFHHFKDGSCSCMDYW 743

The following BLAST results are available for this feature:

BLAST of Csa1G306800 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR21_ARATH	5.5e-279	62.97	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
PP224_ARATH	1.5e-159	40.85	Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN...	[more]
PP168_ARATH	4.5e-156	41.92	Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN...	[more]
PP175_ARATH	1.3e-155	38.79	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
PP311_ARATH	2.2e-155	38.40	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN...	[more]

BLAST of Csa1G306800 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LU28_CUCSA	0.0e+00	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G306800 PE=4 SV=1	[more]
F6HF84_VITVI	0.0e+00	73.64	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00660 PE=4 SV=...	[more]
A0A061GN82_THECC	0.0e+00	73.53	Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma c...	[more]
A0A061GN82_THECC	1.6e-03	48.28	Tetratricopeptide repeat (TPR)-like superfamily protein, putative OS=Theobroma c...	[more]
W9RPK7_9ROSA	0.0e+00	71.51	Uncharacterized protein OS=Morus notabilis GN=L484_005950 PE=4 SV=1	[more]

BLAST of Csa1G306800 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08070.1	3.1e-280	62.97	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G12770.1	8.4e-161	40.85	mitochondrial editing factor 22	[more]
AT2G22070.1	2.5e-157	41.92	pentatricopeptide (PPR) repeat-containing protein	[more]
AT2G29760.1	7.3e-157	38.79	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G14820.1	1.3e-156	38.40	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of Csa1G306800 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464596\|ref\|XP_004150015.1\|	0.0e+00	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Cucumis sativu...	[more]
gi\|659130137\|ref\|XP_008465018.1\|	0.0e+00	97.14	PREDICTED: pentatricopeptide repeat-containing protein At1g08070 isoform X2 [Cuc...	[more]
gi\|659130135\|ref\|XP_008465017.1\|	0.0e+00	96.92	PREDICTED: pentatricopeptide repeat-containing protein At1g08070 isoform X1 [Cuc...	[more]
gi\|1009110349\|ref\|XP_015895115.1\|	0.0e+00	74.11	PREDICTED: pentatricopeptide repeat-containing protein At1g08070, chloroplastic ...	[more]
gi\|731371940\|ref\|XP_002274432.2\|	0.0e+00	73.64	PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Vitis vinifera...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031425	chloroplast RNA processing
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G306800.1	Csa1G306800.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 502..527 score: 2.3E-4coord: 401..425 score: 0.007coord: 167..188 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 326..373 score: 2.8E-10coord: 92..141 score: 1.2E-7coord: 428..473 score: 5.0E-12coord: 224..272 score: 2.7
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 300..327 score: 1.6E-5coord: 328..362 score: 3.1E-8coord: 430..463 score: 1.0E-9coord: 196..226 score: 6.9E-5coord: 502..526 score: 3.2E-4coord: 227..261 score: 7.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 128..162 score: 7.114coord: 498..528 score: 8.046coord: 530..560 score: 5.656coord: 93..127 score: 9.339coord: 260..294 score: 6.149coord: 396..426 score: 7.278coord: 462..497 score: 7.059coord: 564..598 score: 7.432coord: 194..224 score: 8.89coord: 163..193 score: 6.895coord: 427..461 score: 12.342coord: 295..325 score: 9.635coord: 326..360 score: 12.386coord: 225..259 score: 13
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 170..357 score: 7.5E-12coord: 505..584 score: 7.5
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 310..355 score: 5.69E-7coord: 526..590 score: 5.69E-7coord: 167..275 score: 5.69E-7coord: 390..565 score: 3.7
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 209..605 score: 0.0coord: 1..177 score:
None	No IPR available	PANTHER	PTHR24015:SF527	SUBFAMILY NOT NAMED	coord: 209..605 score: 0.0coord: 1..177 score:

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G306800	MELO3C026641	Melon (DHL92) v3.5.1	cumeB048
Csa1G306800	ClCG06G010880	Watermelon (Charleston Gray)	cuwcgB069
Csa1G306800	Lsi06G009450	Bottle gourd (USVL1VR-Ls)	culsiB060
Csa1G306800	MELO3C026641.2	Melon (DHL92) v3.6.1	cumedB051
Csa1G306800	Cla97C06G120110	Watermelon (97103) v2	cuwmbB067
Csa1G306800	Bhi02G000867	Wax gourd	cuwgoB100
Csa1G306800	CSPI01G18600	Wild cucumber (PI 183967)	cpicuB001
Csa1G306800	Cucsa.063220	Cucumber (Gy14) v1	cgycuB050
Csa1G306800	CmaCh10G005650	Cucurbita maxima (Rimu)	cmacuB062
Csa1G306800	CmoCh10G006080	Cucurbita moschata (Rifu)	cmocuB051
Csa1G306800	CsGy1G018630	Cucumber (Gy14) v2	cgybcuB002
Csa1G306800	Carg09899	Silver-seed gourd	carcuB0135

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G306800	Bottle gourd (USVL1VR-Ls)	culsiB008
Csa1G306800	Cucumber (Gy14) v2	cgybcuB051
Csa1G306800	Melon (DHL92) v3.6.1	cumedB069
Csa1G306800	Silver-seed gourd	carcuB0034
Csa1G306800	Silver-seed gourd	carcuB0040
Csa1G306800	Silver-seed gourd	carcuB0595
Csa1G306800	Watermelon (97103) v2	cuwmbB019
Csa1G306800	Wax gourd	cuwgoB001
Csa1G306800	Cucumber (Chinese Long) v2	cucuB005
Csa1G306800	Cucumber (Gy14) v1	cgycuB182
Csa1G306800	Cucurbita maxima (Rimu)	cmacuB089
Csa1G306800	Cucurbita maxima (Rimu)	cmacuB111
Csa1G306800	Cucurbita maxima (Rimu)	cmacuB782
Csa1G306800	Cucurbita moschata (Rifu)	cmocuB079
Csa1G306800	Cucurbita moschata (Rifu)	cmocuB097
Csa1G306800	Cucurbita moschata (Rifu)	cmocuB776
Csa1G306800	Melon (DHL92) v3.5.1	cumeB061
Csa1G306800	Melon (DHL92) v3.5.1	cumeB076
Csa1G306800	Watermelon (Charleston Gray)	cuwcgB007
Csa1G306800	Watermelon (97103) v1	cuwmB077
Csa1G306800	Watermelon (97103) v1	cuwmB081
Csa1G306800	Cucurbita pepo (Zucchini)	cpecuB095
Csa1G306800	Cucurbita pepo (Zucchini)	cpecuB354
Csa1G306800	Cucurbita pepo (Zucchini)	cpecuB644
Csa1G306800	Cucurbita pepo (Zucchini)	cpecuB658