Csa1G303710 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G303710
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 13528611 .. 13529329 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTAGAAATGATAGATGCTGATATTGATACTAACATTGATCAAGCAGTTGCTTATGCAACTTCTTGCGCAAAAGATAAAGAGGTAACATTATTAAAGCTTCTGGTTCTTTTACTTATATTTTTTCCAAGACTATCACTAGAGTGTGTTTGTGAGTGAACAGTCTATCAATGATAGATCTGTATCAGTGATAGACTATTTTTTCTTTGATTGAATATTAACAGTTTCTATAATTTTTTTCATTGCAATACTAATATTAATTTCTACAAAAGATTGTAGATAACGACGAAACTAAGGAACAAAAGACTGTAGATAACAACGAAATTGAGGAAGATGATGATAATCATCGTGAAAATAAGTCAAAAACGGTGCATGACATATCAAAGAAAGTGAAGGTATTATAATAATCACAATTTTTGTTTTATGATAGACTCAACGTGTCTATATATAAACTCTAATTCAATTATTTTTTTCAGATTGTTCAAGAAAAGGCAAAAGCGAAAACTATGGAAATAGTGAAGAACATTGAAAATGCTAGATCGAAGAGACGACCTAAACCGTCAAAGAAAGTGTTGGAGAATCTGAAAGATCAAAAGAAAGAAAAAGACCAAAAGAATCCAAAATATAAGAAGAAAGAATCTCTAGAAGCAACAAGACAATCTCTTAGAAAAAAGAATTTTGCCCCTAGTTTTGATTTGAAAATCTCTCAATTATGA

mRNA sequence

ATGAGTCTAGAAATGATAGATGCTGATATTGATACTAACATTGATCAAGCAGTTGCTTATGCAACTTCTTGCGCAAAAGATAAAGAGATTGTAGATAACGACGAAACTAAGGAACAAAAGACTGTAGATAACAACGAAATTGAGGAAGATGATGATAATCATCGTGAAAATAAGTCAAAAACGGTGCATGACATATCAAAGAAAGTGAAGATTGTTCAAGAAAAGGCAAAAGCGAAAACTATGGAAATAGTGAAGAACATTGAAAATGCTAGATCGAAGAGACGACCTAAACCGTCAAAGAAAGTGTTGGAGAATCTGAAAGATCAAAAGAAAGAAAAAGACCAAAAGAATCCAAAATATAAGAAGAAAGAATCTCTAGAAGCAACAAGACAATCTCTTAGAAAAAAGAATTTTGCCCCTAGTTTTGATTTGAAAATCTCTCAATTATGA

Coding sequence (CDS)

ATGAGTCTAGAAATGATAGATGCTGATATTGATACTAACATTGATCAAGCAGTTGCTTATGCAACTTCTTGCGCAAAAGATAAAGAGATTGTAGATAACGACGAAACTAAGGAACAAAAGACTGTAGATAACAACGAAATTGAGGAAGATGATGATAATCATCGTGAAAATAAGTCAAAAACGGTGCATGACATATCAAAGAAAGTGAAGATTGTTCAAGAAAAGGCAAAAGCGAAAACTATGGAAATAGTGAAGAACATTGAAAATGCTAGATCGAAGAGACGACCTAAACCGTCAAAGAAAGTGTTGGAGAATCTGAAAGATCAAAAGAAAGAAAAAGACCAAAAGAATCCAAAATATAAGAAGAAAGAATCTCTAGAAGCAACAAGACAATCTCTTAGAAAAAAGAATTTTGCCCCTAGTTTTGATTTGAAAATCTCTCAATTATGA

Protein sequence

MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEQKTVDNNEIEEDDDNHRENKSKTVHDISKKVKIVQEKAKAKTMEIVKNIENARSKRRPKPSKKVLENLKDQKKEKDQKNPKYKKKESLEATRQSLRKKNFAPSFDLKISQL*
Homology
[Close]
BLAST of Csa1G303710 vs. TrEMBL
Match: A0A0A0LZ92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G303710 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEQKTVDNNEIEEDDDNHRENKSK 60
           MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEQKTVDNNEIEEDDDNHRENKSK
Sbjct: 1   MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEQKTVDNNEIEEDDDNHRENKSK 60

Query: 61  TVHDISKKVKIVQEKAKAKTMEIVKNIENARSKRRPKPSKKVLENLKDQKKEKDQKNPKY 120
           TVHDISKKVKIVQEKAKAKTMEIVKNIENARSKRRPKPSKKVLENLKDQKKEKDQKNPKY
Sbjct: 61  TVHDISKKVKIVQEKAKAKTMEIVKNIENARSKRRPKPSKKVLENLKDQKKEKDQKNPKY 120

Query: 121 KKKESLEATRQSLRKKNFAPSFDLKISQL 150
           KKKESLEATRQSLRKKNFAPSFDLKISQL
Sbjct: 121 KKKESLEATRQSLRKKNFAPSFDLKISQL 149

[Close]
BLAST of Csa1G303710 vs. NCBI nr
Match: gi|700210200|gb|KGN65296.1| (hypothetical protein Csa_1G303710 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.1e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1 

Query: 1   MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEQKTVDNNEIEEDDDNHRENKSK 60
           MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEQKTVDNNEIEEDDDNHRENKSK
Sbjct: 1   MSLEMIDADIDTNIDQAVAYATSCAKDKEIVDNDETKEQKTVDNNEIEEDDDNHRENKSK 60

Query: 61  TVHDISKKVKIVQEKAKAKTMEIVKNIENARSKRRPKPSKKVLENLKDQKKEKDQKNPKY 120
           TVHDISKKVKIVQEKAKAKTMEIVKNIENARSKRRPKPSKKVLENLKDQKKEKDQKNPKY
Sbjct: 61  TVHDISKKVKIVQEKAKAKTMEIVKNIENARSKRRPKPSKKVLENLKDQKKEKDQKNPKY 120

Query: 121 KKKESLEATRQSLRKKNFAPSFDLKISQL 150
           KKKESLEATRQSLRKKNFAPSFDLKISQL
Sbjct: 121 KKKESLEATRQSLRKKNFAPSFDLKISQL 149

[Close]
BLAST of Csa1G303710 vs. NCBI nr
Match: gi|659133867|ref|XP_008466931.1| (PREDICTED: uncharacterized protein LOC103504294, partial [Cucumis melo])

HSP 1 Score: 102.1 bits (253), Expect = 8.9e-19
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 42  VDNNEIEEDDDNHRENKSKTVHDISKKVKIVQEKAKAKTMEIVKNIENARSKRRPKPSKK 101
           +++NE  E+DDNHRENKSK VHD S KVK+VQEK K K MEI  NIE  R KR+PKPSKK
Sbjct: 57  IEDNEETEEDDNHRENKSKRVHDTSNKVKVVQEKKKVKIMEIATNIEKTRPKRQPKPSKK 116

Query: 102 VLENLKDQK 111
           VLEN+K+QK
Sbjct: 117 VLENVKEQK 125

The following BLAST results are available for this feature:
BLAST of Csa1G303710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZ92_CUCSA1.5e-76100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G303710 PE=4 SV=1[more]
BLAST of Csa1G303710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210200|gb|KGN65296.1|2.1e-76100.00hypothetical protein Csa_1G303710 [Cucumis sativus][more]
gi|659133867|ref|XP_008466931.1|8.9e-1969.57PREDICTED: uncharacterized protein LOC103504294, partial [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G303710.1Csa1G303710.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 103..123
scor