Csa1G294050 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G294050
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Glutamate receptor
Location	Chr1 : 13329224 .. 13329631 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGAGATTGAAAACAAATATTACTTCTCATTGAATGAAGATACTCCAGGAAGTCCAGATTCAGCTCTGACTGTTTACAGATTTGGTGGTTTGTTCATCATTACGGCTGTTGCCACATGGTCTTCCTTATTAATATATTTGACCCAGTTCCTTCACACACATTGGCCTGATTCCAGCAACAACCAGTCTCCATTTGCTTCTAAGATGTTTGAAATGGTCAAGCTTTTCTATCATCTACATTTCCTCCACCCTTCTTCTCTGCAAACCAGTCAATCCAGACTACATTCTGTTTCTAAAATGGCAGAAGATAAGACACTGCAGATTGACAATGACCATCACAATTCCACTGAAGAGCCAAATATTTTGGAGGTAGTAAATGAAGACCAAGCGGAGGATGACGCCTAA

mRNA sequence

ATGAGGGAGATTGAAAACAAATATTACTTCTCATTGAATGAAGATACTCCAGGAAGTCCAGATTCAGCTCTGACTGTTTACAGATTTGGTGGTTTGTTCATCATTACGGCTGTTGCCACATGGTCTTCCTTATTAATATATTTGACCCAGTTCCTTCACACACATTGGCCTGATTCCAGCAACAACCAGTCTCCATTTGCTTCTAAGATGTTTGAAATGGTCAAGCTTTTCTATCATCTACATTTCCTCCACCCTTCTTCTCTGCAAACCAGTCAATCCAGACTACATTCTGTTTCTAAAATGGCAGAAGATAAGACACTGCAGATTGACAATGACCATCACAATTCCACTGAAGAGCCAAATATTTTGGAGGTAGTAAATGAAGACCAAGCGGAGGATGACGCCTAA

Coding sequence (CDS)

ATGAGGGAGATTGAAAACAAATATTACTTCTCATTGAATGAAGATACTCCAGGAAGTCCAGATTCAGCTCTGACTGTTTACAGATTTGGTGGTTTGTTCATCATTACGGCTGTTGCCACATGGTCTTCCTTATTAATATATTTGACCCAGTTCCTTCACACACATTGGCCTGATTCCAGCAACAACCAGTCTCCATTTGCTTCTAAGATGTTTGAAATGGTCAAGCTTTTCTATCATCTACATTTCCTCCACCCTTCTTCTCTGCAAACCAGTCAATCCAGACTACATTCTGTTTCTAAAATGGCAGAAGATAAGACACTGCAGATTGACAATGACCATCACAATTCCACTGAAGAGCCAAATATTTTGGAGGTAGTAAATGAAGACCAAGCGGAGGATGACGCCTAA

Protein sequence

MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSSNNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEPNILEVVNEDQAEDDA*

Homology

[Close]

BLAST of Csa1G294050 vs. TrEMBL
Match: A0A0A0LWA4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294050 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.4e-72
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS 60
           MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS
Sbjct: 1   MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS 60

Query: 61  NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP 120
           NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP
Sbjct: 61  NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP 120

Query: 121 NILEVVNEDQAEDDA 136
           NILEVVNEDQAEDDA
Sbjct: 121 NILEVVNEDQAEDDA 135

[Close]

BLAST of Csa1G294050 vs. TrEMBL
Match: A0A0D2TNM8_GOSRA (Glutamate receptor OS=Gossypium raimondii GN=B456_012G127000 PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-10
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 1


Query: 1   MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWP--D 60
           M  +E+KY+  L         S+L +Y FGGLFIITAVA+ SSL+IY T+FL +HW    
Sbjct: 770 MDAMEHKYFLHLKACQKTISSSSLGLYSFGGLFIITAVASVSSLIIYFTKFLQSHWTTIH 829

Query: 61  SSNNQSPFASKMFEMVKLFYHLHFLHP-----SSLQTSQSRLHSVSKMAEDKTLQIDN 112
           + ++ S F SK+ E+VK FY    L+P     S+LQ+ ++ LH V     D  + + N
Sbjct: 830 TVHHDSSFWSKISELVKHFYD-QSLYPLPATNSTLQSVEA-LHDVENEVVDTVVIVGN 885

[Close]

BLAST of Csa1G294050 vs. TrEMBL
Match: U7DWJ9_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0678s00220g PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-06
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1


Query: 1   MREIENKYY---FSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWP 60
           M EIE + +    + ++     P   L +  FGGLFIIT VA+ S+LLIY+T+FL+ HWP
Sbjct: 220 MDEIERRNFGGETTCSDQPSMEPSGGLGLPSFGGLFIITGVASMSALLIYVTKFLYIHWP 279

Query: 61  DSSNNQSPFASKMFEMVKLFYHLHFLHPSS--LQTSQSRLHSV 99
            +SN      S    +++L  H     PS+  L  + SR+H+V
Sbjct: 280 -ASNTMDQERSFYLRVLELAKHFDKEDPSAHHLNGAGSRVHAV 321

[Close]

BLAST of Csa1G294050 vs. TrEMBL
Match: B9IM39_POPTR (Glutamate receptor OS=Populus trichocarpa GN=POPTR_0018s10550g PE=3 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-06
Identity = 39/103 (37.86%), Postives = 58/103 (56.31%), Query Frame = 1


Query: 1   MREIENKYY---FSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWP 60
           M EIE + +    + ++     P   L +  FGGLFIIT VA+ S+LLIY+T+FL+ HWP
Sbjct: 792 MDEIERRNFGGETTCSDQAAMVPSGGLGLPSFGGLFIITGVASMSALLIYVTKFLYIHWP 851

Query: 61  DSSNNQSPFASKMFEMVKLFYHLHFLHPSS--LQTSQSRLHSV 99
            +SN      S    +++L  H     PS+  L  + SR+H+V
Sbjct: 852 -ASNTMDQERSFYLRVLELAKHFDKEDPSAHHLNGAGSRVHAV 893

[Close]

BLAST of Csa1G294050 vs. NCBI nr
Match: gi|700210178|gb|KGN65274.1| (hypothetical protein Csa_1G294050 [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 4.8e-72
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS 60
           MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS
Sbjct: 1   MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS 60

Query: 61  NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP 120
           NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP
Sbjct: 61  NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP 120

Query: 121 NILEVVNEDQAEDDA 136
           NILEVVNEDQAEDDA
Sbjct: 121 NILEVVNEDQAEDDA 135

[Close]

BLAST of Csa1G294050 vs. NCBI nr
Match: gi|778665073|ref|XP_004149894.2| (PREDICTED: glutamate receptor 2.7-like [Cucumis sativus])

HSP 1 Score: 278.9 bits (712), Expect = 4.8e-72
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 1


Query: 1   MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS 60
           MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS
Sbjct: 756 MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS 815

Query: 61  NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP 120
           NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP
Sbjct: 816 NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP 875

Query: 121 NILEVVNEDQAEDDA 136
           NILEVVNEDQAEDDA
Sbjct: 876 NILEVVNEDQAEDDA 890

[Close]

BLAST of Csa1G294050 vs. NCBI nr
Match: gi|659086192|ref|XP_008443805.1| (PREDICTED: glutamate receptor 2.7-like [Cucumis melo])

HSP 1 Score: 223.4 bits (568), Expect = 2.4e-55
Identity = 110/135 (81.48%), Postives = 123/135 (91.11%), Query Frame = 1


Query: 1   MREIENKYYFSLNEDTPGSPDSALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWPDSS 60
           MR IE+KY+ S +EDTP +PDSAL VYRFGGLFIITAVATWS+LLIYLTQFL THWPDSS
Sbjct: 749 MRAIESKYFSSDSEDTPRTPDSALNVYRFGGLFIITAVATWSALLIYLTQFLLTHWPDSS 808

Query: 61  NNQSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNSTEEP 120
           N+QSPFASKMFEMVKLFY  HF+HPSSLQ+SQSR++SVS+MAEDKT+QI+ND  NSTEE 
Sbjct: 809 NDQSPFASKMFEMVKLFYRKHFVHPSSLQSSQSRVYSVSEMAEDKTMQIENDDDNSTEEA 868

Query: 121 NILEVVNEDQAEDDA 136
           NIL VVNEDQAEDDA
Sbjct: 869 NILGVVNEDQAEDDA 883

[Close]

BLAST of Csa1G294050 vs. NCBI nr
Match: gi|659107402|ref|XP_008453655.1| (PREDICTED: glutamate receptor 2.7-like [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.1e-18
Identity = 68/127 (53.54%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 1   MREIENKYYFSLNEDTPGSPDS---ALTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWP 60
           M++IEN+Y+  LNED P  PDS    L V  FGGLFIIT VA   SLLIYL QF  TH  
Sbjct: 486 MKKIENRYF--LNEDDPPIPDSNDSPLDVRGFGGLFIITIVANSLSLLIYLIQFFLTHEL 545

Query: 61  DSSNN-QSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNS 120
           DS+   +S F SK+ E VKLFY +HF H SSLQT+QSR+HSV          I +DH N 
Sbjct: 546 DSTGYVESTFTSKLVEKVKLFYRMHF-HSSSLQTAQSRVHSVPATPP----LITDDHVNL 603

Query: 121 TEEPNIL 124
           T  PN++
Sbjct: 606 T--PNLV 603

[Close]

BLAST of Csa1G294050 vs. NCBI nr
Match: gi|659107398|ref|XP_008453654.1| (PREDICTED: glutamate receptor 2.7-like [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-18
Identity = 67/121 (55.37%), Postives = 76/121 (62.81%), Query Frame = 1


Query: 1   MREIENKYYFSLNEDTPGSPDSA---LTVYRFGGLFIITAVATWSSLLIYLTQFLHTHWP 60
           M  IENKY   LNE+ P  PDS    L V RFGGLFIIT VA   SLLIYL QF  TH  
Sbjct: 486 MNGIENKYL--LNENAPPIPDSTDSPLDVRRFGGLFIITIVANSLSLLIYLIQFFLTHEL 545

Query: 61  DSSNN-QSPFASKMFEMVKLFYHLHFLHPSSLQTSQSRLHSVSKMAEDKTLQIDNDHHNS 118
           DS+   +S FAS++ EMVKLFY +HF H SSLQT+QSR+ SV          I +DH N 
Sbjct: 546 DSTGYVESTFASRLVEMVKLFYRMHF-HSSSLQTAQSRVRSVPATPP----LITHDHVNL 599

The following BLAST results are available for this feature:

BLAST of Csa1G294050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWA4_CUCSA	3.4e-72	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G294050 PE=4 SV=1	[more]
A0A0D2TNM8_GOSRA	3.7e-10	40.68	Glutamate receptor OS=Gossypium raimondii GN=B456_012G127000 PE=3 SV=1	[more]
U7DWJ9_POPTR	1.9e-06	37.86	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0678s00220g P...	[more]
B9IM39_POPTR	2.5e-06	37.86	Glutamate receptor OS=Populus trichocarpa GN=POPTR_0018s10550g PE=3 SV=2	[more]

BLAST of Csa1G294050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700210178\|gb\|KGN65274.1\|	4.8e-72	100.00	hypothetical protein Csa_1G294050 [Cucumis sativus]	[more]
gi\|778665073\|ref\|XP_004149894.2\|	4.8e-72	100.00	PREDICTED: glutamate receptor 2.7-like [Cucumis sativus]	[more]
gi\|659086192\|ref\|XP_008443805.1\|	2.4e-55	81.48	PREDICTED: glutamate receptor 2.7-like [Cucumis melo]	[more]
gi\|659107402\|ref\|XP_008453655.1\|	1.1e-18	53.54	PREDICTED: glutamate receptor 2.7-like [Cucumis melo]	[more]
gi\|659107398\|ref\|XP_008453654.1\|	5.2e-18	55.37	PREDICTED: glutamate receptor 2.7-like [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G294050.1	Csa1G294050.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G294050	Silver-seed gourd	carcuB0133
Csa1G294050	Silver-seed gourd	carcuB0531
Csa1G294050	Watermelon (97103) v2	cuwmbB024
Csa1G294050	Watermelon (97103) v2	cuwmbB070
Csa1G294050	Wax gourd	cuwgoB008
Csa1G294050	Wax gourd	cuwgoB101
Csa1G294050	Cucumber (Chinese Long) v2	cucuB006
Csa1G294050	Cucumber (Gy14) v1	cgycuB052
Csa1G294050	Cucumber (Gy14) v1	cgycuB094
Csa1G294050	Cucurbita maxima (Rimu)	cmacuB065
Csa1G294050	Cucurbita maxima (Rimu)	cmacuB104
Csa1G294050	Cucurbita moschata (Rifu)	cmocuB048
Csa1G294050	Cucurbita moschata (Rifu)	cmocuB092
Csa1G294050	Melon (DHL92) v3.5.1	cumeB059
Csa1G294050	Watermelon (Charleston Gray)	cuwcgB011
Csa1G294050	Watermelon (Charleston Gray)	cuwcgB070
Csa1G294050	Watermelon (97103) v1	cuwmB078
Csa1G294050	Watermelon (97103) v1	cuwmB083
Csa1G294050	Cucurbita pepo (Zucchini)	cpecuB350
Csa1G294050	Cucurbita pepo (Zucchini)	cpecuB636
Csa1G294050	Bottle gourd (USVL1VR-Ls)	culsiB000
Csa1G294050	Bottle gourd (USVL1VR-Ls)	culsiB009
Csa1G294050	Bottle gourd (USVL1VR-Ls)	culsiB065
Csa1G294050	Cucumber (Gy14) v2	cgybcuB002
Csa1G294050	Cucumber (Gy14) v2	cgybcuB052
Csa1G294050	Melon (DHL92) v3.6.1	cumedB054
Csa1G294050	Melon (DHL92) v3.6.1	cumedB070