Csa1G269860 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G269860
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 13071873 .. 13075066 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGCTTAGAGCCAATCACAAGTTGAGGAAAAAGGGTGGGGCCCCACAAACCCACTCGATTGACTGTCCTGTCCTCTACCTTTCGTCCTTTTGCCTCTCCTTCCGCTCCCTCCTTAATTTTGCTCTCTCTACATTTTATCATAATAATGCCCCAAACCCCTTCTTCTCTTCTGTCTCTCTCTTCACCGGCGGTGCGGAGATGGCGGCGGTAGGGGTGGTGGAGGAATTATCTAATTGGTGACTTTACCAGACGCGTATTTCAAAAGAAGAAAAAGTGTGGTTAAAAGATGTCAGGATTGGTTTTTTTACTTTTGATGGCGTGTGAAAATGAGTATATCTGTGGGATGTAGTAGCAAAACCCTATTTCTCTTTCCAATTCCCAGTTTCTGCTGCCGTCCACGATGGAAAGAAATTTCTTTTTACTAGAAAACGAAAGGTTGCACAGAAGGTGTTCGATGAAATGTCAGACAAAAGAAAAAAAATGGAAAATTTTTCAGGAGGATTAAAAAAAATGGTTTTTTTTTTTTTGTGGATTCCATAAATGGGTGGGCTTTAAGGTGAGAGATCTGACGACTTAATGGGAAATTGTTGATGGGTTTTGTTTTGTTTTGTTGGGTTCGCAATTTGAATGAATGAATGATGGTGAGTGTGTTAGGAGATGGAGAGGAAGAGAGAGCAAAAGGGCAGGAGAGTGACAGAAGAGAGTGAGCACACGCTGCAGCCAAATGTATGAAAGGCATACCTTTGCGGGTGCGTGCTCACTTCTCTTTCTGTCAGCTTCCCCGTAATTTTCCCTTCTGCTCTCTTCTTCTCTCTCTCTATCCTTCTTTTTTTCTTTCCCTCTGGTTCATGCTGTCAGAAAGGCCAGATGTCCATCGGCTATCGCTCCGTTTCTCTTCCTAGAGTACCCTCTTCTGTTTTTTACTCCTCTAATGGACAAATGAAACAATGAGACTGGTGAAGTTGAAGCGGCCACTTCGAAGTTTCAAGCGGTGCCACTGTAGTGTACAATTTCGCCTTTCACACTCTTAATTTGTCAGTTTGTTCTCATCCTTTCCAATATTTATTAATATATACTATATATTGTTTGGCTATTGCAATTTTCCATAGAAATTCATCCTTTCCAATATTTATTAAAATATTATATACTCTTTGGCTATTGCATTTTTCCATGGAAATTCGAAAACCATTTTCCTTTTCTTTTTCTATTTCTTAACATTGATTTCCATGGAAACTTATTAGCGCGACTTTTGATGGTCCTCTCCTGCTTATATATGGAATTTTTGAAGGTACAAAACCATTTACTGTTCATTATTTAACGGAAAATCCTTCAAAAAATCGTTGTTGTTTAGTGCAAAACCCTGATTACTGTTCCCATCTAAACCGTAAACTCCCGGCTATGTTTTGAGGTTTCTTTTGTTTTAGGCGTATAGGCCACGCTCTGTGTTTTTATTTTATATATTTATTTTGATTTCCTGAGATTTGGGTTATTCTATATCTGACAAAATATTTCTTTCACTCTTGAGAATATTGGAATCCGCGGAAATATTTATGCAGGCATTATTTTTCGTTGCTGAAGAGTTTTACAGATTTTGTTTTGGTATTTACTTTCCTAAAACGAAAAATTTCTTGCCGTTGTGGGGTACTACTTGGAGAAGGGTGTGACTCAAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGTCTGAAAGGCCTGCTATTTTCTAGTCCCAGATATGGAGTTTCCAATCCAGAAAATTTCCCCATTCAGGTTACTGATTTATTCGATAAGAAGATATTCCTGTATTTTTGTTCTCTTGTACATTTTTCCAAAATCATCACCATCTTGTTCTCTCTGGTTATTTATTCAAGTGATAGCTAATTAGGGCTTGAATATTACTTTTCTCAGCACTTGTTTGACGTTGGGAGGCAACAGATTGCTTATGTTTCTCTTCACTTCAGATTAACTATCACCATCGCCACCCCCATTGTCCGCTATAGAGGTAATAACATTTTTCTGTTGTTTTTCTCTCTTTTTTCTATTGATTATAACTTACAGAATTATAAAACTTCATTCTTGTGATTTTTGTTTGTTTTTTTACTTGATTCTCCTTTCCCATTTATACTTGGTCTTGTTCATTGAAATCGCACAATGTTTTTTTCTTTAACATGAGCTTATGTATGGGTTAATTTTACCGTGTGGATGTTGCTTTGATGCTCTTTTAGATCATATGATGGTAGTTAGTTCTTTGTTTAATGCTTCTAAACTTCATTATGATATTTTACGTTTTTATATGTGTGAAATTTTGTGTTACTTTGGGGGTTTCATTTAGACATTTAAGTGCTGAAGTTTCTAAATCAATTTGATTCTGAGTGGTTTAAGAAAATTTGTAGCTAAGAAAGGTTTTCTCCCTTGTGAAGTTTGACTTTCTGATTAAAGCTGCCAACAGCGAAATGATGAAATTATTTTGCTGACAAAGATAATGTGGTTTAGCAAATTGGAAGTTGCAAATATTTTTCATTTGATTAAAGGAAGCCATGGCCGCCTTCTTCATTTTGAAAGTGATAACATTTCCGCATGTGAAATTTTGTTAATCATCATAATCAAATTTGTTAAATTTCTATCAATAGAGTGTACATTTACAGTAGTGTCAACGTATGTAGAGAATAAATTTAAGCAATAGGCGACAACCTACTAAATACATTATATTGATGAACCGATTTTTTTCTCAAGGAAATGGCAAATTTTGAACATTCATGTCTTTAACTTTTTATTTTTATTTTGTGTGTGGTCATGAATAAGATAAAAACCACACCCTACCTTATGTCTTGCTCTTTTTAGATGTTAATGTGTTGCAAGTTCATCAATGCATTCTTTTTATCAACGCATGAGCTGAAATCTGTCAAGAAATAAGTGCTTGCCACTAGACTTAAAGCTCAAGTCCTGACAATGCTTGTTACTATGTAAGATTTAGCAACTTAAGGTTACACATGAAATGACACAAAAAATTCTCCAAGCTTTTGAAGCCTGGAGCTATAGGGATTTTAAACAGTGGTTGAAACATTATTCTCCCCTTTCAGGATTTGTTTCCCTTCAGTACTTTTGCATGAAGTATCGCAAGCATTCATTTCTCTTGTTATCCAGCATTTTTTGCTGTAAGAACAAAGAATTTTGTCATATGATGTGTTGA

mRNA sequence

ATGTGGCTTAGAGCCAATCACAAGTTGAGGAAAAAGGGTGGGGCCCCACAAACCCACTCGATTGACTGTCCTGTCCTCTACCTTTCGTCCTTTTGCCTCTCCTTCCGCTCCCTCCTTAATTTTGCTCTCTCTACATTTTATCATAATAATGCCCCAAACCCCTTCTTCTCTTCTGTCTCTCTCTTCACCGGCGGTGCGGAGATGGCGGCGGAGATGGAGAGGAAGAGAGAGCAAAAGGGCAGGAGAGTGACAGAAGAGAGTGAGCACACGCTGCAGCCAAATAAAGGCCAGATGTCCATCGGCTATCGCTCCGTTTCTCTTCCTAGAGTACCCTCTTCTAAGGGTGTGACTCAAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGTCTGAAAGGCCTGCTATTTTCTAGTCCCAGATATGGAGTTTCCAATCCAGAAAATTTCCCCATTCAGCACTTGTTTGACGTTGGGAGGCAACAGATTGCTTATGTTTCTCTTCACTTCAGATTAACTATCACCATCGCCACCCCCATTGTCCGCTATAGAGGATTTGTTTCCCTTCAGTACTTTTGCATGAAGTATCGCAAGCATTCATTTCTCTTGTTATCCAGCATTTTTTGCTGTAAGAACAAAGAATTTTGTCATATGATGTGTTGA

Coding sequence (CDS)

ATGTGGCTTAGAGCCAATCACAAGTTGAGGAAAAAGGGTGGGGCCCCACAAACCCACTCGATTGACTGTCCTGTCCTCTACCTTTCGTCCTTTTGCCTCTCCTTCCGCTCCCTCCTTAATTTTGCTCTCTCTACATTTTATCATAATAATGCCCCAAACCCCTTCTTCTCTTCTGTCTCTCTCTTCACCGGCGGTGCGGAGATGGCGGCGGAGATGGAGAGGAAGAGAGAGCAAAAGGGCAGGAGAGTGACAGAAGAGAGTGAGCACACGCTGCAGCCAAATAAAGGCCAGATGTCCATCGGCTATCGCTCCGTTTCTCTTCCTAGAGTACCCTCTTCTAAGGGTGTGACTCAAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGTCTGAAAGGCCTGCTATTTTCTAGTCCCAGATATGGAGTTTCCAATCCAGAAAATTTCCCCATTCAGCACTTGTTTGACGTTGGGAGGCAACAGATTGCTTATGTTTCTCTTCACTTCAGATTAACTATCACCATCGCCACCCCCATTGTCCGCTATAGAGGATTTGTTTCCCTTCAGTACTTTTGCATGAAGTATCGCAAGCATTCATTTCTCTTGTTATCCAGCATTTTTTGCTGTAAGAACAAAGAATTTTGTCATATGATGTGTTGA

Protein sequence

MWLRANHKLRKKGGAPQTHSIDCPVLYLSSFCLSFRSLLNFALSTFYHNNAPNPFFSSVSLFTGGAEMAAEMERKREQKGRRVTEESEHTLQPNKGQMSIGYRSVSLPRVPSSKGVTQVLNMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIATPIVRYRGFVSLQYFCMKYRKHSFLLLSSIFCCKNKEFCHMMC*
Homology
[Close]
BLAST of Csa1G269860 vs. TrEMBL
Match: A0A0A0LW76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G269860 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 6.1e-124
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 

Query: 1   MWLRANHKLRKKGGAPQTHSIDCPVLYLSSFCLSFRSLLNFALSTFYHNNAPNPFFSSVS 60
           MWLRANHKLRKKGGAPQTHSIDCPVLYLSSFCLSFRSLLNFALSTFYHNNAPNPFFSSVS
Sbjct: 1   MWLRANHKLRKKGGAPQTHSIDCPVLYLSSFCLSFRSLLNFALSTFYHNNAPNPFFSSVS 60

Query: 61  LFTGGAEMAAEMERKREQKGRRVTEESEHTLQPNKGQMSIGYRSVSLPRVPSSKGVTQVL 120
           LFTGGAEMAAEMERKREQKGRRVTEESEHTLQPNKGQMSIGYRSVSLPRVPSSKGVTQVL
Sbjct: 61  LFTGGAEMAAEMERKREQKGRRVTEESEHTLQPNKGQMSIGYRSVSLPRVPSSKGVTQVL 120

Query: 121 NMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIATPIV 180
           NMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIATPIV
Sbjct: 121 NMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIATPIV 180

Query: 181 RYRGFVSLQYFCMKYRKHSFLLLSSIFCCKNKEFCHMMC 220
           RYRGFVSLQYFCMKYRKHSFLLLSSIFCCKNKEFCHMMC
Sbjct: 181 RYRGFVSLQYFCMKYRKHSFLLLSSIFCCKNKEFCHMMC 219

[Close]
BLAST of Csa1G269860 vs. NCBI nr
Match: gi|700210148|gb|KGN65244.1| (hypothetical protein Csa_1G269860 [Cucumis sativus])

HSP 1 Score: 451.4 bits (1160), Expect = 8.8e-124
Identity = 219/219 (100.00%), Postives = 219/219 (100.00%), Query Frame = 1 

Query: 1   MWLRANHKLRKKGGAPQTHSIDCPVLYLSSFCLSFRSLLNFALSTFYHNNAPNPFFSSVS 60
           MWLRANHKLRKKGGAPQTHSIDCPVLYLSSFCLSFRSLLNFALSTFYHNNAPNPFFSSVS
Sbjct: 1   MWLRANHKLRKKGGAPQTHSIDCPVLYLSSFCLSFRSLLNFALSTFYHNNAPNPFFSSVS 60

Query: 61  LFTGGAEMAAEMERKREQKGRRVTEESEHTLQPNKGQMSIGYRSVSLPRVPSSKGVTQVL 120
           LFTGGAEMAAEMERKREQKGRRVTEESEHTLQPNKGQMSIGYRSVSLPRVPSSKGVTQVL
Sbjct: 61  LFTGGAEMAAEMERKREQKGRRVTEESEHTLQPNKGQMSIGYRSVSLPRVPSSKGVTQVL 120

Query: 121 NMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIATPIV 180
           NMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIATPIV
Sbjct: 121 NMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIATPIV 180

Query: 181 RYRGFVSLQYFCMKYRKHSFLLLSSIFCCKNKEFCHMMC 220
           RYRGFVSLQYFCMKYRKHSFLLLSSIFCCKNKEFCHMMC
Sbjct: 181 RYRGFVSLQYFCMKYRKHSFLLLSSIFCCKNKEFCHMMC 219

The following BLAST results are available for this feature:
BLAST of Csa1G269860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW76_CUCSA6.1e-124100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G269860 PE=4 SV=1[more]
BLAST of Csa1G269860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210148|gb|KGN65244.1|8.8e-124100.00hypothetical protein Csa_1G269860 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU122600cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G269860.1Csa1G269860.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU122600CU122600transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G269860Lsi06G011670Bottle gourd (USVL1VR-Ls)culsiB078
Csa1G269860CmaCh11G004710Cucurbita maxima (Rimu)cmacuB100
Csa1G269860CmoCh11G004680Cucurbita moschata (Rifu)cmocuB088
Csa1G269860Cp4.1LG18g05620Cucurbita pepo (Zucchini)cpecuB350
Csa1G269860Cp4.1LG04g08810Cucurbita pepo (Zucchini)cpecuB636
Csa1G269860Carg14094Silver-seed gourdcarcuB0531
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G269860Watermelon (97103) v1cuwmB080
Csa1G269860Cucumber (Gy14) v2cgybcuB003
Csa1G269860Melon (DHL92) v3.6.1cumedB049
Csa1G269860Silver-seed gourdcarcuB0133
Csa1G269860Watermelon (97103) v2cuwmbB066
Csa1G269860Wax gourdcuwgoB099
Csa1G269860Cucumber (Gy14) v1cgycuB491
Csa1G269860Cucurbita maxima (Rimu)cmacuB060
Csa1G269860Cucurbita moschata (Rifu)cmocuB048
Csa1G269860Melon (DHL92) v3.5.1cumeB057
Csa1G269860Watermelon (Charleston Gray)cuwcgB067