Csa1G269340 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G269340
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPolygalacturonase, putative; contains IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)
LocationChr1 : 13038030 .. 13038561 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCTCACTCTATCTCTGACATGACTTATTGACCACATATCAAATGAGCAGAGTTTAAGATTCGACTTCATTACCAATTCAATTGTGAAGAGAATAACATCACTCGATAGCAAAAACTTCCATGTCAACATCCTAGGGTGCAACAATCTTACATTCCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGGAATACACATTGGTCGATCAATTGGGATCTCAATCTTAAAATCTCGAATAGCAACAGGAGATGATTGCATCTCACTTGGAGATGGAAGCAAACAAGTGAAAGTCGCCAATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAATGAAGAACCTGTTGAAGGTGTCATAGTAAAGAATTGCACAATAATGAACACCACTAATGGTGTTAGGATCAAAACATGGCCTCTCCTAATGCTGGTATTGCCACCGACATGCATTTTTCAGACATTACAATGGTCAACGTTAGCAACCCAATTCTCATAG

mRNA sequence

ATGAGTTTAAGATTCGACTTCATTACCAATTCAATTGTGAAGAGAATAACATCACTCGATAGCAAAAACTTCCATGTCAACATCCTAGGGTGCAACAATCTTACATTCCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGGAATACACATTGGTCGATCAATTGGGATCTCAATCTTAAAATCTCGAATAGCAACAGGAGATGATTGCATCTCACTTGGAGATGGAAGCAAACAAGTGAAAGTCGCCAATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAATGAAGAACCTGTTGAAGGTGTCATAGTAAAGAATTGCACAATAATGAACACCACTAATGGTGTTAGGATCAAAACATGGCCTCTCCTAATGCTGGTATTGCCACCGACATGCATTTTTCAGACATTACAATGGTCAACGTTAGCAACCCAATTCTCATAG

Coding sequence (CDS)

ATGAGTTTAAGATTCGACTTCATTACCAATTCAATTGTGAAGAGAATAACATCACTCGATAGCAAAAACTTCCATGTCAACATCCTAGGGTGCAACAATCTTACATTCCAAGGTGTCAACATAATTGCACCAGAAGATAGTCCCAACACAGATGGAATACACATTGGTCGATCAATTGGGATCTCAATCTTAAAATCTCGAATAGCAACAGGAGATGATTGCATCTCACTTGGAGATGGAAGCAAACAAGTGAAAGTCGCCAATGTGACATGTGGGCCAGGTCATGGAATAAGCATAGGAAGTCTTGGAAAATACACTAATGAAGAACCTGTTGAAGGTGTCATAGTAAAGAATTGCACAATAATGAACACCACTAATGGTGTTAGGATCAAAACATGGCCTCTCCTAATGCTGGTATTGCCACCGACATGCATTTTTCAGACATTACAATGGTCAACGTTAGCAACCCAATTCTCATAG

Protein sequence

MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCTIMNTTNGVRIKTWPLLMLVLPPTCIFQTLQWSTLATQFS*
Homology
[Close]
BLAST of Csa1G269340 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.7e-49
Identity = 86/134 (64.18%), Postives = 103/134 (76.87%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           M+  F+F+ NSIV+ +TS DSKNFHV + GC N+TF G  I AP DSPNTDGIH+G+S  
Sbjct: 148 MNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDGFTITAPGDSPNTDGIHMGKSTD 207

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           + IL + I TGDDC+S+GDGSKQ+ V  V CGPGHG+S+GSLGK+T EE VEG+ VKNCT
Sbjct: 208 VKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLSVGSLGKFTTEENVEGITVKNCT 267

Query: 121 IMNTTNGVRIKTWP 135
           +  T NGVRIKTWP
Sbjct: 268 LTATDNGVRIKTWP 281

[Close]
BLAST of Csa1G269340 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.7e-49
Identity = 88/134 (65.67%), Postives = 106/134 (79.10%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           M+LR   +TNSI++ +T+LDSKNFHVN++GC NLTF+   I A E S NTDGIHIGRS G
Sbjct: 108 MNLRLYAVTNSILRDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDG 167

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ++I+ + I TGDDCISLGDGSK + + N+TCGPGHGIS+GSLG+Y NEE V G+ VKNCT
Sbjct: 168 VNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCT 227

Query: 121 IMNTTNGVRIKTWP 135
           I  + NGVRIKTWP
Sbjct: 228 ITGSQNGVRIKTWP 241

[Close]
BLAST of Csa1G269340 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-48
Identity = 82/134 (61.19%), Postives = 109/134 (81.34%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +++RFDF+TN++++ ITS DSK FH+N+  C N+T + + I AP++SPNTDGIH+G+S G
Sbjct: 150 VNIRFDFVTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEG 209

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ++I+ S I TGDDCIS+GDG+K + +  +TCGPGHGISIGSLGK+ NEEPVEG+ + NCT
Sbjct: 210 VNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCT 269

Query: 121 IMNTTNGVRIKTWP 135
           I NT+NG RIKTWP
Sbjct: 270 ITNTSNGARIKTWP 283

[Close]
BLAST of Csa1G269340 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.0e-48
Identity = 82/134 (61.19%), Postives = 109/134 (81.34%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +++RFDF+TN++++ ITS DSK FH+N+  C N+T + + I AP++SPNTDGIH+G+S G
Sbjct: 150 VNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEG 209

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ++I+ S I TGDDCIS+GDG+K + +  +TCGPGHGISIGSLGK+ NEEPVEG+ + NCT
Sbjct: 210 VNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISNCT 269

Query: 121 IMNTTNGVRIKTWP 135
           I NT+NG RIKTWP
Sbjct: 270 ITNTSNGARIKTWP 283

[Close]
BLAST of Csa1G269340 vs. Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.9e-45
Identity = 79/134 (58.96%), Postives = 103/134 (76.87%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +S+RFDF+ N+ +K +TSLD+KNFH N++   N+TF  + IIAP +SPNTDGIH+GR  G
Sbjct: 139 ISVRFDFVDNAEIKDVTSLDAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEG 198

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           + IL ++IATGDDCIS+GDG K + +  V CGPGHGIS+GSLG+Y  E+ V  + VKNCT
Sbjct: 199 VKILNTKIATGDDCISVGDGMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKNCT 258

Query: 121 IMNTTNGVRIKTWP 135
           +  T+NG+RIKTWP
Sbjct: 259 LEGTSNGLRIKTWP 272

[Close]
BLAST of Csa1G269340 vs. TrEMBL
Match: A0A0A0LZ30_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G269340 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 6.3e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG
Sbjct: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT
Sbjct: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120

Query: 121 IMNTTNGVRIKTWPLLMLVLPPTCIFQTLQWSTLATQFS 160
           IMNTTNGVRIKTWPLLMLVLPPTCIFQTLQWSTLATQFS
Sbjct: 121 IMNTTNGVRIKTWPLLMLVLPPTCIFQTLQWSTLATQFS 159

[Close]
BLAST of Csa1G269340 vs. TrEMBL
Match: A0A0A0K2U3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024080 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 2.9e-67
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +SLRFDFITNSIV+ ITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG
Sbjct: 12  ISLRFDFITNSIVRGITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 71

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPV+ V VKNCT
Sbjct: 72  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVDDVEVKNCT 131

Query: 121 IMNTTNGVRIKTWP 135
           IMNTTNGVRIKTWP
Sbjct: 132 IMNTTNGVRIKTWP 145

[Close]
BLAST of Csa1G269340 vs. TrEMBL
Match: A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.2e-66
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +SLRFDFITNSIV+RITSLDSKNFHVNILGCNNLTFQGVNIIAPE+SPNTDGIHIGRSIG
Sbjct: 148 ISLRFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIG 207

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ISILKSRIATGDDCISLGDGSK++KV NV CGPGHGISIGSLGKY NEEPVEGVIV NCT
Sbjct: 208 ISILKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCT 267

Query: 121 IMNTTNGVRIKTWP 135
           I+NTTNGVRIKTWP
Sbjct: 268 IINTTNGVRIKTWP 281

[Close]
BLAST of Csa1G269340 vs. TrEMBL
Match: A0A0A0K583_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G033940 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.2e-55
Identity = 108/119 (90.76%), Postives = 113/119 (94.96%), Query Frame = 1 

Query: 15  RITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDC 74
           +ITSLDSKN HVNILGCNNLTFQGVNIIAPEDSPNTD IHIGRSI ISILKSRIA GDDC
Sbjct: 3   KITSLDSKNSHVNILGCNNLTFQGVNIIAPEDSPNTDEIHIGRSIRISILKSRIAIGDDC 62

Query: 75  ISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCTIMNTTNGVRIKTW 134
           ISLG+GSK+VKV +VTCGPGHGISIG LGKYTNEEPVEGV+VKNCTIMNTTNGVRIKTW
Sbjct: 63  ISLGNGSKRVKVTDVTCGPGHGISIGGLGKYTNEEPVEGVVVKNCTIMNTTNGVRIKTW 121

[Close]
BLAST of Csa1G269340 vs. TrEMBL
Match: A0A0S3SNS0_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G110900 PE=3 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 4.5e-52
Identity = 97/134 (72.39%), Postives = 113/134 (84.33%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           M+L F+FI NSIV+ IT+ DSK+FHVN+LGCNN TF G  + AP DS NTDGIHIGRS G
Sbjct: 143 MNLGFNFINNSIVRGITTKDSKHFHVNVLGCNNFTFDGFKVTAPGDSANTDGIHIGRSTG 202

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           +++L ++IATGDDC+SLGDGS+QV V NVTCGPGHGISIGSLGKY  EEPVEG+ VK CT
Sbjct: 203 VNVLNTQIATGDDCVSLGDGSRQVLVQNVTCGPGHGISIGSLGKYKEEEPVEGITVKGCT 262

Query: 121 IMNTTNGVRIKTWP 135
           +  TTNGVRIKTWP
Sbjct: 263 LKGTTNGVRIKTWP 276

[Close]
BLAST of Csa1G269340 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 193.4 bits (490), Expect = 1.1e-49
Identity = 83/134 (61.94%), Postives = 107/134 (79.85%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +S+RFDF+ N+ ++ I+S+D+KNFH+N+LG  N+TF  V +IAP +SPNTDGIH+GRS G
Sbjct: 140 ISIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEG 199

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           + IL S+IATGDDCIS+GDG K + V NV CGPGHGIS+GSLG+Y +E+ V G+ V NCT
Sbjct: 200 VKILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVNCT 259

Query: 121 IMNTTNGVRIKTWP 135
           +  T NG+RIKTWP
Sbjct: 260 LQGTDNGLRIKTWP 273

[Close]
BLAST of Csa1G269340 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 192.6 bits (488), Expect = 1.9e-49
Identity = 81/134 (60.45%), Postives = 109/134 (81.34%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +S+RFDF+TN+ ++ I+S+D+KNFH+N++G  N+TF  V I+AP +SPNTDGIH+GRS+G
Sbjct: 140 ISIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVG 199

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           +SI+ SRI+TGDDC+S+GDG   + V NV CGPGHGIS+GSLG+Y +E+ V G+ V NCT
Sbjct: 200 VSIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVINCT 259

Query: 121 IMNTTNGVRIKTWP 135
           +  T NG+RIKTWP
Sbjct: 260 LQETDNGLRIKTWP 273

[Close]
BLAST of Csa1G269340 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 191.4 bits (485), Expect = 4.2e-49
Identity = 84/134 (62.69%), Postives = 106/134 (79.10%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +S+RFDFI NS ++ I+S+D+KNFH+N+LG  N+T   + I+APEDSPNTDGIH+GRS G
Sbjct: 139 ISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDG 198

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           + IL S I+TGDDCIS+GDG K + V  VTCGPGHGIS+GSLG+Y +E+ V G+ V NCT
Sbjct: 199 VKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVINCT 258

Query: 121 IMNTTNGVRIKTWP 135
           +  T NG+RIKTWP
Sbjct: 259 LQETDNGLRIKTWP 272

[Close]
BLAST of Csa1G269340 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 190.3 bits (482), Expect = 9.4e-49
Identity = 83/134 (61.94%), Postives = 109/134 (81.34%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +S+RFDF+T++ ++ ITSLD+K+FH+N++G  N+TF+ V IIAP +SPNTDGIH+GRS G
Sbjct: 139 ISIRFDFVTDAKIRGITSLDAKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDG 198

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           I I+ S I+TGDDC+S+GDG K + V  VTCGPGHGISIGSLG+Y++EE V G+ + NCT
Sbjct: 199 IKIINSFISTGDDCVSVGDGMKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIINCT 258

Query: 121 IMNTTNGVRIKTWP 135
           +  T NG+RIKTWP
Sbjct: 259 LQETDNGLRIKTWP 272

[Close]
BLAST of Csa1G269340 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 177.6 bits (449), Expect = 6.3e-45
Identity = 80/134 (59.70%), Postives = 103/134 (76.87%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +++RF  +TNS +  ITS +SK FH+NIL C N+T   + I AP +S NTDGIHIGRS G
Sbjct: 190 INIRFTGLTNSKINSITSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNG 249

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ++++ ++I TGDDC+S+GDG++ + V NV CGPGHGISIGSLG+Y NE+PV+GV V+ C 
Sbjct: 250 VNLIGAKIKTGDDCVSIGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTVRKCL 309

Query: 121 IMNTTNGVRIKTWP 135
           I NT NGVRIKTWP
Sbjct: 310 IKNTDNGVRIKTWP 323

[Close]
BLAST of Csa1G269340 vs. NCBI nr
Match: gi|700210145|gb|KGN65241.1| (hypothetical protein Csa_1G269340 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 9.0e-86
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG
Sbjct: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT
Sbjct: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120

Query: 121 IMNTTNGVRIKTWPLLMLVLPPTCIFQTLQWSTLATQFS 160
           IMNTTNGVRIKTWPLLMLVLPPTCIFQTLQWSTLATQFS
Sbjct: 121 IMNTTNGVRIKTWPLLMLVLPPTCIFQTLQWSTLATQFS 159

[Close]
BLAST of Csa1G269340 vs. NCBI nr
Match: gi|659111053|ref|XP_008455553.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 1.1e-67
Identity = 127/134 (94.78%), Postives = 132/134 (98.51%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +SLRF+FITNSIV+RITSLDSKNFHVNILGCNNLTF GVNIIAPEDSPNTDGIHIGRSIG
Sbjct: 149 ISLRFNFITNSIVRRITSLDSKNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIGRSIG 208

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ISILKSRIATGDDCISLGDGSK+VK+ NVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT
Sbjct: 209 ISILKSRIATGDDCISLGDGSKRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 268

Query: 121 IMNTTNGVRIKTWP 135
           IMNTTNGVRIKTWP
Sbjct: 269 IMNTTNGVRIKTWP 282

[Close]
BLAST of Csa1G269340 vs. NCBI nr
Match: gi|778730075|ref|XP_011659692.1| (PREDICTED: polygalacturonase-like [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 4.2e-67
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +SLRFDFITNSIV+ ITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG
Sbjct: 141 ISLRFDFITNSIVRGITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 200

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPV+ V VKNCT
Sbjct: 201 ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVDDVEVKNCT 260

Query: 121 IMNTTNGVRIKTWP 135
           IMNTTNGVRIKTWP
Sbjct: 261 IMNTTNGVRIKTWP 274

[Close]
BLAST of Csa1G269340 vs. NCBI nr
Match: gi|700188101|gb|KGN43334.1| (hypothetical protein Csa_7G024080 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 4.2e-67
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +SLRFDFITNSIV+ ITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG
Sbjct: 12  ISLRFDFITNSIVRGITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 71

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPV+ V VKNCT
Sbjct: 72  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVDDVEVKNCT 131

Query: 121 IMNTTNGVRIKTWP 135
           IMNTTNGVRIKTWP
Sbjct: 132 IMNTTNGVRIKTWP 145

[Close]
BLAST of Csa1G269340 vs. NCBI nr
Match: gi|778730103|ref|XP_011659699.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 1.0e-65
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 1 

Query: 1   MSLRFDFITNSIVKRITSLDSKNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIG 60
           +SLRFDFITNSIV+RITSLDSKNFHVNILGCNNLTFQGVNIIAPE+SPNTDGIHIGRSIG
Sbjct: 133 ISLRFDFITNSIVRRITSLDSKNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIG 192

Query: 61  ISILKSRIATGDDCISLGDGSKQVKVANVTCGPGHGISIGSLGKYTNEEPVEGVIVKNCT 120
           ISILKSRIATGDDCISLGDGSK++KV NV CGPGHGISIGSLGKY NEEPVEGVIV NCT
Sbjct: 193 ISILKSRIATGDDCISLGDGSKRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNNCT 252

Query: 121 IMNTTNGVRIKTWP 135
           I+NTTNGVRIKTWP
Sbjct: 253 IINTTNGVRIKTWP 266

The following BLAST results are available for this feature:
BLAST of Csa1G269340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_MEDSA6.7e-4964.18Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR_OENOR6.7e-4965.67Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR_GOSBA1.5e-4861.19Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
PGLR_GOSHI2.0e-4861.19Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
PGLR_BRANA5.9e-4558.96Polygalacturonase OS=Brassica napus PE=2 SV=1[more]
BLAST of Csa1G269340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZ30_CUCSA6.3e-86100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G269340 PE=3 SV=1[more]
A0A0A0K2U3_CUCSA2.9e-6795.52Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024080 PE=3 SV=1[more]
A0A0A0K3B7_CUCSA7.2e-6692.54Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1[more]
A0A0A0K583_CUCSA1.2e-5590.76Uncharacterized protein OS=Cucumis sativus GN=Csa_7G033940 PE=3 SV=1[more]
A0A0S3SNS0_PHAAN4.5e-5272.39Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G110900 PE=... [more]
BLAST of Csa1G269340 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07840.11.1e-4961.94 Pectin lyase-like superfamily protein[more]
AT3G07830.11.9e-4960.45 Pectin lyase-like superfamily protein[more]
AT3G07820.14.2e-4962.69 Pectin lyase-like superfamily protein[more]
AT5G48140.19.4e-4961.94 Pectin lyase-like superfamily protein[more]
AT3G07850.16.3e-4559.70 Pectin lyase-like superfamily protein[more]
BLAST of Csa1G269340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210145|gb|KGN65241.1|9.0e-86100.00hypothetical protein Csa_1G269340 [Cucumis sativus][more]
gi|659111053|ref|XP_008455553.1|1.1e-6794.78PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|778730075|ref|XP_011659692.1|4.2e-6795.52PREDICTED: polygalacturonase-like [Cucumis sativus][more]
gi|700188101|gb|KGN43334.1|4.2e-6795.52hypothetical protein Csa_7G024080 [Cucumis sativus][more]
gi|778730103|ref|XP_011659699.1|1.0e-6592.54PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR006626PbH1
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004106 chorismate mutase activity
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G269340.1Csa1G269340.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 2..134
score: 4.6
IPR000743Glycoside hydrolase, family 28PROSITEPS00502POLYGALACTURONASEcoord: 88..101
scor
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 81..101
score: 7600.0coord: 111..132
score: 0.32coord: 58..79
score: 2100.0coord: 31..57
score:
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 2..133
score: 9.9
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 2..134
score: 2.5
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..134
score: 4.1
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..134
score: 4.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G269340CSPI01G17530Wild cucumber (PI 183967)cpicuB002
Csa1G269340CsGy1G017710Cucumber (Gy14) v2cgybcuB003
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G269340Cucurbita moschata (Rifu)cmocuB048
Csa1G269340Cucurbita moschata (Rifu)cmocuB088
Csa1G269340Melon (DHL92) v3.5.1cumeB057
Csa1G269340Watermelon (Charleston Gray)cuwcgB067
Csa1G269340Watermelon (97103) v1cuwmB080
Csa1G269340Cucurbita pepo (Zucchini)cpecuB350
Csa1G269340Cucurbita pepo (Zucchini)cpecuB636
Csa1G269340Bottle gourd (USVL1VR-Ls)culsiB078
Csa1G269340Melon (DHL92) v3.6.1cumedB049
Csa1G269340Silver-seed gourdcarcuB0133
Csa1G269340Silver-seed gourdcarcuB0531
Csa1G269340Watermelon (97103) v2cuwmbB066
Csa1G269340Wax gourdcuwgoB099
Csa1G269340Cucumber (Gy14) v1cgycuB491
Csa1G269340Cucurbita maxima (Rimu)cmacuB060
Csa1G269340Cucurbita maxima (Rimu)cmacuB100