Csa1G257900 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G257900
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	CDK-activating kinase assembly factor MAT1; contains IPR004575 (Cdk-activating kinase assembly factor MAT1/Tfb3)
Location	Chr1 : 12652979 .. 12656395 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCTCCAGCAGTAATTCTCATAGTAAGGAAGTATCTATCAGGAAGAGGATTGCCAGCATGTAAGGCAGACTCTACTGCTGTACTTCTTGTTTCCATGCTTCGTGCTTGTTAAATTCTTATGCACGTACTGTGGCATCATGTAATTGCATTTATCATACTAGCCATCGGGTGCAACATTCGTAGTCTTCCGGCTCCCTCTTCTAACCTTAGTTTTCCTCTTGGAAGTAACTCTAAGTTTTTTTTTGTGAGACCCTGTGGTGAATAAAGTTCAAAGTAGGTTAGACTATTAGAAGAAATGTTTTTTTTCTAAAGCTGGAAAACTTACCCTGATTAGATCAGTCTTGAGTGGTATTCCTATTTACTCTCTTTGGGAAGGGCTAGAGGAAGGGAAAGGAAAAGGGTCACACTTAGTTACATGGAGGTTATCTGGAGGTTAGTTTCCATGGGTTTTGAAATTGGGAATCATAAGGTGTGAAAAGAAACTTTGTTAGCTAAATGGCTGTGGCGTTTTTTCTCTGAGCCTGGTTCTTTGTGGCACAGGGTCATTGCTAGTAAATATGGCTATCATCACTTTGAGTGGTTGAATAAAGAGGTTAAAGGTACTCATGGAAATTTGTGGAAAGATATTTTGAAACACCTCCCTTCTCTTGTTCACTTGGTTCGTTGTGTAGTGGGGGAAGGGAGAGTTGTGTACTTTTGGAAGATCACTGGTGTGGGAAAGACCTTTTGTGCATTGTTTCCTCGACTATATCATTTGTCACTCCTAAAAAATCATTTTGTTGTGACTTTCTCTTGTGGTCAGCTGTTGTATATTTTCCTTTGGGTTATGGCCCATTTTTTCCGATAAGGATAGGGAAGCAATGTTTATGACTGCTTTTCTCTCTTTGCCTAAAGGTAACTCCTTTAGACGTGGTAGAAGGATGCAAGATTTTGAAGCCCCAATCCTTCGAAAAAGTTCTTGTGCAAGAATTTCTTTTAATGTTCGGTTGATCCTTCTCCCTTAGGAGTTTTATTCTTTACGATGCTTTGGAGGATTAAGAACCCTAAGAAAGTGAAGTTCGGCTCGTGAGGAAGATGTCTTCGCTTGTTGAGCCTTTTTGATGTGTTCTCTGTTAGAAGGCAAAGGAGTCAATCATATTCTCTGTCGTTATGATGAATTGTGTCTGGGATTCTTTTCTCTAGACGTTTGGTGTGTGAATGCGCATTATAGAGATATTAGTGCTACAGTCAAGGAGTTGCACCTCAATTTTCCTTCTTGGGAAAAAGGTTGTTTTTTATAGTTTGCTACAGTGTGATGTGATCTTACAAGTCTATGGGGTGAGCGGAATTGTAGAGGGTGTTTAGGGGAGTGGAAAGGGATTCTAAGCAAATTTGGTCTCTCATTCACTTTCATGTTTCTCTGGGGCCTTTCATAAAAGTTTCTAAACATTCTATAGGGCATTATTTTGCATAGGTGGAGCCCTTTCTTGAAAGATAACTTTATTTTTGTGGGTTTGTTTTTTGTATGTCGTATTCTTTTGTTTTTTCTCAATGTTTTCATTTTAAAGAAAAGTCCATACTAGTCTTCTCTTAGCTTTCATTATCTTTACGAACGAGATAGAAAAGGGGGAAACGCTAGTGTAATCCTAAGTCACCGGACGAAAATATGATTCACTTAATGCATGTTTCATTGCACCTTCGGACCTAGGCAGTCTTGGAAATCTTCTTTGAACCTCCAGACCGCTCCGACCGAGCAGTGAATTTATAGGGCAGAGGCTAAAAGTTTGGTCTCTCAAACTTTTGTTAAGCAGTTCTGGGTTAAAGAGGTAGAGGCCAATCTGTCATCGCTTTCTGCCCTTTCTTTGTTCCTCATCGGATACCATACCCTTGTTTTTCAGTAGTTAGAGAGGTTAGCGTCTTCTGTTATTCTAGCGTGCCTTTGTGGAGATGCTAAGCTTAACACATGTTTAGATGCTTATAATCATATAGAACTAAGTATGAAGAACCTAGAGACTTTTAATTTTTGATAAAGATGTCAATTTTTTAGAAGGCTTTGGGCCTATTTCCAAGGTCTCAAAACTTTGTGAGTGGATTGAAGATGGATTTCTCTTATATCAGTTCCACGGGGGTAAAATTTTGATTGTAATTTTTCAAATCAGTAATTTGAATTGAATTCATTCCATGTTTAGATGGCAGACATCGAAATTTAGTAAATGTCTGAGACTGAAATGTTTTCGGTGATCCTATTTTATAGATTCAACAAGAGAGAGGAAGATTTCTCATCCCTGAGAGAGTACAATGATTATCTCGAAGAAGTGGAGGACATGAGTACGCTCTTATAGAATGGTTAATATATTTCAATGCTTGGAATCATATTTGACCATGAAAACTCTATTTTGCAGCTTTTAACTTGATTGAAGGCATTGATGTTCAAGCTATTGAAGCAAAAATTGCTAGGTATCAGGAAGAAAATGCGGAACAAATCATGATCAACCGTGCTCGCAAGGTACCTGGTGTATTACTGTTTGTGTACTCCTTGTCTTCACATCTAGCACGAAATTGCGGATTTTGGTGCTTAACCAACTGTTTGTTTTCCTTTTTCTTTTTAACTTCAGACATATCTGCCCCTTGAACTCGTTCCTTATGGTTTACAGAGTCACTGAAAGGTTAATGACAATTGTTAAACTATTGATAGGCTGAAGAATACGCTGCAGCCCTTGCAGCAAGCAAGGGAATTCCTGCACAGGCAGATAATGATGGGGTGAGCTCATTTTCTGTTTATAAATTATAATTGCTCATAGTTAACTGTCACTTCTCTTTTCCCTTTATGATTGCTTAATAACACTGTCGACAATGTCTTCTTCAAGTAGAAATTGTCTTCTGCACTGGATTTAACTTGTCAACACCAATCGTTTGCACCTTATCATCTAGTTTCTCACAAATAATCAAATAATCAACTGCAAGTAGAAATGTCTAATGCATTGGATTTAACTTCTAACACTAATCGAGTGGAGTGGACACCATTTGCTGTACCTTATCATCTAGTTTTTCAGAAATAATCAACTTATTACTACATGATCCATGAATGTTTCTTTAAGAATGAGTTGGGCTAGGAGTGGGACTAGGACAGGTGAAAGTGTTCTCATAATGTACAATTGATTGCTATTGCAGGCTGCAGATCAAAGTTTCCAAGCAGGATTAAGCACAGGCACACAAGGTCAGTACGCACCTACATTTGCTGGAGGGCAGCCACGGCCTACAGGCCAACCAGTGCCCCTAGGTGCCGGTCCTGACATGCAGGGCTATGGGCTTGACGATGAGGAGATGTTAAGGCTCAGAGCAGAGAGAGGTGGAAGGGCTGGTGGATGGAGTGTAGAGTTCAGCAGAAAGCGTGCACTTGAAGAAGCCTTTGGAAGTATTTGGATATGCTAG

mRNA sequence

ATGGTGATCTCCAGCAGTAATTCTCATAGTAAGGAAGTATCTATCAGGAAGAGGATTGCCAGCATATTCAACAAGAGAGAGGAAGATTTCTCATCCCTGAGAGAGTACAATGATTATCTCGAAGAAGTGGAGGACATGACTTTTAACTTGATTGAAGGCATTGATGTTCAAGCTATTGAAGCAAAAATTGCTAGGTATCAGGAAGAAAATGCGGAACAAATCATGATCAACCGTGCTCGCAAGGCTGAAGAATACGCTGCAGCCCTTGCAGCAAGCAAGGGAATTCCTGCACAGGCAGATAATGATGGGGCTGCAGATCAAAGTTTCCAAGCAGGATTAAGCACAGGCACACAAGGTCAGTACGCACCTACATTTGCTGGAGGGCAGCCACGGCCTACAGGCCAACCAGTGCCCCTAGGTGCCGGTCCTGACATGCAGGGCTATGGGCTTGACGATGAGGAGATGTTAAGGCTCAGAGCAGAGAGAGGTGGAAGGGCTGGTGGATGGAGTGTAGAGTTCAGCAGAAAGCGTGCACTTGAAGAAGCCTTTGGAAGTATTTGGATATGCTAG

Coding sequence (CDS)

ATGGTGATCTCCAGCAGTAATTCTCATAGTAAGGAAGTATCTATCAGGAAGAGGATTGCCAGCATATTCAACAAGAGAGAGGAAGATTTCTCATCCCTGAGAGAGTACAATGATTATCTCGAAGAAGTGGAGGACATGACTTTTAACTTGATTGAAGGCATTGATGTTCAAGCTATTGAAGCAAAAATTGCTAGGTATCAGGAAGAAAATGCGGAACAAATCATGATCAACCGTGCTCGCAAGGCTGAAGAATACGCTGCAGCCCTTGCAGCAAGCAAGGGAATTCCTGCACAGGCAGATAATGATGGGGCTGCAGATCAAAGTTTCCAAGCAGGATTAAGCACAGGCACACAAGGTCAGTACGCACCTACATTTGCTGGAGGGCAGCCACGGCCTACAGGCCAACCAGTGCCCCTAGGTGCCGGTCCTGACATGCAGGGCTATGGGCTTGACGATGAGGAGATGTTAAGGCTCAGAGCAGAGAGAGGTGGAAGGGCTGGTGGATGGAGTGTAGAGTTCAGCAGAAAGCGTGCACTTGAAGAAGCCTTTGGAAGTATTTGGATATGCTAG

Protein sequence

MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQYAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALEEAFGSIWIC*

Homology

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BLAST of Csa1G257900 vs. Swiss-Prot
Match: TFB3_SCHPO (RNA polymerase II transcription factor B subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmh1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 8.9e-16
Identity = 40/74 (54.05%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 11  KEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           +EV +RKRI+ IFNK +++F SL+ YNDYLEEVE +TFNLI  IDV+  E K+ +Y+++N
Sbjct: 80  REVDVRKRISRIFNKGQQEFDSLQAYNDYLEEVEILTFNLIYKIDVEETEEKVKQYEKQN 139

Query: 71  AEQIMINRARKAEE 85
            + I  N AR A E
Sbjct: 140 RDSIAANSARAAAE 153

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BLAST of Csa1G257900 vs. Swiss-Prot
Match: MAT1_MOUSE (CDK-activating kinase assembly factor MAT1 OS=Mus musculus GN=Mnat1 PE=1 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 1.5e-15
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1


Query: 11  KEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           KEV IRK++  I+NKREEDF SLREYND+LEEVE++ FNL   +D++  + K+  YQ+EN
Sbjct: 70  KEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLENTKKKMEIYQKEN 129

Query: 71  AEQIMINR---ARKAEEYAAALAASK 94
            + I  N+    R+ EE   AL   +
Sbjct: 130 KDVIQKNKLKLTREQEELEEALEVER 155

[Close]

BLAST of Csa1G257900 vs. Swiss-Prot
Match: MAT1_MARGL (CDK-activating kinase assembly factor MAT1 OS=Marthasterias glacialis PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 11  KEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           KEV IRKRI   FNK+EE+F +L++YNDYLEE+E + FNL  G +++A + K+ +Y++ N
Sbjct: 71  KEVDIRKRILKDFNKQEEEFPALKDYNDYLEEIETIIFNLANGTELEATKRKVDQYRKNN 130

Query: 71  AEQIMINRARKAEEYA 87
            E IM NR++++ + A
Sbjct: 131 RESIMKNRSKQSSDQA 146

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BLAST of Csa1G257900 vs. Swiss-Prot
Match: MAT1_HUMAN (CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 11  KEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           KEV IRK++  I+NKREEDF SLREYND+LEEVE++ FNL   +D+   + K+  YQ+EN
Sbjct: 70  KEVEIRKKVLKIYNKREEDFPSLREYNDFLEEVEEIVFNLTNNVDLDNTKKKMEIYQKEN 129

Query: 71  AEQIMINR---ARKAEEYAAALAASK 94
            + I  N+    R+ EE   AL   +
Sbjct: 130 KDVIQKNKLKLTREQEELEEALEVER 155

[Close]

BLAST of Csa1G257900 vs. Swiss-Prot
Match: MAT1_XENLA (CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis GN=mnat1 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.6e-15
Identity = 43/86 (50.00%), Postives = 53/86 (61.63%), Query Frame = 1


Query: 11  KEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIEAKIARYQEEN 70
           KEV IRK+I  I+NKREEDF SLREYND+LEE+E++  NL   +D+     KI  YQ+EN
Sbjct: 70  KEVEIRKKILKIYNKREEDFPSLREYNDFLEEIEEIVLNLTNNVDLDNTRRKIDMYQKEN 129

Query: 71  AEQIMINR---ARKAEEYAAALAASK 94
            + I  N+    R+ EE   AL   K
Sbjct: 130 KDTIQRNKIKMTREQEELEEALEMEK 155

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BLAST of Csa1G257900 vs. TrEMBL
Match: A0A0A0LW26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257900 PE=4 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.8e-101
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE
Sbjct: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
           AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ
Sbjct: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120

Query: 121 YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE 180
           YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE
Sbjct: 121 YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE 180

Query: 181 EAFGSIWIC 190
           EAFGSIWIC
Sbjct: 181 EAFGSIWIC 189

[Close]

BLAST of Csa1G257900 vs. TrEMBL
Match: M5W3I2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011901mg PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 4.4e-78
Identity = 152/191 (79.58%), Postives = 165/191 (86.39%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MV++SSN H+KE+ +RKRIASIFNKREEDF SL+EYNDYLEEVEDMTFNLI+GIDV AIE
Sbjct: 1   MVVTSSNPHNKEIVVRKRIASIFNKREEDFPSLKEYNDYLEEVEDMTFNLIDGIDVPAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
           AKIA+YQEENAEQIMINRARKAEE AAALAASKG PAQ D D A  Q  QAG  TGTQGQ
Sbjct: 61  AKIAKYQEENAEQIMINRARKAEELAAALAASKGHPAQNDTDAALSQGSQAGFGTGTQGQ 120

Query: 121 YAPTFAGGQPRPTG---QPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
           YAPT A GQPRPTG   QP+PLG G DM GY +DDEEM++LRAERGGRAGGWSVE SRKR
Sbjct: 121 YAPTVA-GQPRPTGMGPQPLPLGGGHDMHGYAVDDEEMIKLRAERGGRAGGWSVEISRKR 180

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIW+
Sbjct: 181 ALEEAFSSIWV 190

[Close]

BLAST of Csa1G257900 vs. TrEMBL
Match: A0A0D2TZW1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G090500 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.7e-77
Identity = 148/191 (77.49%), Postives = 163/191 (85.34%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MV++SSN H+KE+ IR+RI++IFNKREEDF SLREYNDYLEEVEDM F LIEGIDVQAIE
Sbjct: 1   MVVASSNPHNKEMQIRRRISNIFNKREEDFPSLREYNDYLEEVEDMIFKLIEGIDVQAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
            KI  YQ+ENAEQIMIN+ARKAE+ AAA+AASKGIP QAD DGA  Q+ QAG   GTQGQ
Sbjct: 61  EKITNYQQENAEQIMINQARKAEDLAAAMAASKGIPVQADTDGALSQNSQAGFVAGTQGQ 120

Query: 121 YAPTFAGGQPRPTG---QPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
           YAPT AGGQPRPTG   QPVPL  G DM GY LDDEEM+RLRAERGGRAGGWS+E S+KR
Sbjct: 121 YAPTVAGGQPRPTGMAPQPVPLAGGLDMHGYALDDEEMMRLRAERGGRAGGWSIELSKKR 180

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIWI
Sbjct: 181 ALEEAFASIWI 191

[Close]

BLAST of Csa1G257900 vs. TrEMBL
Match: A0A0B0NBW9_GOSAR (CDK-activating kinase assembly factor MAT1 OS=Gossypium arboreum GN=F383_03230 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 2.0e-75
Identity = 147/191 (76.96%), Postives = 162/191 (84.82%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MV++SSN H++E+ IR+RI++IFNKREEDF SLREYNDYLEEVEDM F LIEGIDVQAIE
Sbjct: 1   MVVASSNPHNREMQIRRRISNIFNKREEDFPSLREYNDYLEEVEDMIFKLIEGIDVQAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
            KI +YQ+ENAEQIMIN+ARKAEE AAA+AASKGIP QAD DG    S QAG   GTQGQ
Sbjct: 61  EKITKYQQENAEQIMINQARKAEELAAAMAASKGIPVQADTDG----SSQAGFVAGTQGQ 120

Query: 121 YAPTFAGGQPRPTG---QPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
           YAPT AGGQPRPTG   QPVPL  G DM GY LDDEEM+RLRAERGGRAGGWS+E S+KR
Sbjct: 121 YAPTVAGGQPRPTGMAPQPVPLAGGLDMHGYALDDEEMMRLRAERGGRAGGWSIELSKKR 180

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIWI
Sbjct: 181 ALEEAFASIWI 187

[Close]

BLAST of Csa1G257900 vs. TrEMBL
Match: A0A059CT66_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02513 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 7.7e-75
Identity = 144/191 (75.39%), Postives = 166/191 (86.91%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MV+ SSN H++E++IR+R+AS FNKRE+DF SLREYNDYLEEVE+MTFNLIEG+DV  IE
Sbjct: 1   MVVPSSNPHNREMAIRRRMASTFNKREDDFPSLREYNDYLEEVEEMTFNLIEGVDVPTIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
           AKIA+YQEENAEQIMINRA+KAEE+AAALAASKG+P Q D DGA +   QAGLS GTQGQ
Sbjct: 61  AKIAKYQEENAEQIMINRAKKAEEFAAALAASKGLPPQTDPDGALNS--QAGLSVGTQGQ 120

Query: 121 YAPTFAGGQPRPTG---QPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
           YAP  AGGQPRPTG   QPVPLG G D+ GY  DDEEM++LRAERGGRAGGWS+E S+KR
Sbjct: 121 YAPAIAGGQPRPTGMAPQPVPLGTGLDIHGY--DDEEMIKLRAERGGRAGGWSIELSKKR 180

Query: 181 ALEEAFGSIWI 189
           ALEEAFGS+W+
Sbjct: 181 ALEEAFGSLWL 187

[Close]

BLAST of Csa1G257900 vs. TAIR10
Match: AT4G30820.1 (AT4G30820.1 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related)

HSP 1 Score: 188.7 bits (478), Expect = 3.2e-48
Identity = 101/191 (52.88%), Postives = 132/191 (69.11%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           +++S+S   +KE+ +R+RI+ I+N+REE+F SL++YNDYLEEVE M F+LI+GI+V+AIE
Sbjct: 2   VMVSNSTHQNKEIHVRRRISEIYNRREEEFPSLKDYNDYLEEVECMVFDLIDGINVEAIE 61

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
            KI RY +ENAEQIMINRARKAEE  AALAA K  P Q D D +++    AG        
Sbjct: 62  QKIKRYSKENAEQIMINRARKAEELTAALAACKAKPPQTDADTSSNHGVTAG-------- 121

Query: 121 YAPTFAGGQPRPTG---QPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
              T  G   RPTG   QPVP+  G + Q Y ++DE   R++AE   RAGG+S+E S++R
Sbjct: 122 ---TTYGQASRPTGMGPQPVPIVGGAERQHYAMEDEATRRMKAE---RAGGFSLEISKRR 178

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIW+
Sbjct: 182 ALEEAFASIWV 178

[Close]

BLAST of Csa1G257900 vs. NCBI nr
Match: gi|449457867|ref|XP_004146669.1| (PREDICTED: uncharacterized protein LOC101207027 [Cucumis sativus])

HSP 1 Score: 375.9 bits (964), Expect = 4.1e-101
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE
Sbjct: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
           AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ
Sbjct: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120

Query: 121 YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE 180
           YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE
Sbjct: 121 YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE 180

Query: 181 EAFGSIWIC 190
           EAFGSIWIC
Sbjct: 181 EAFGSIWIC 189

[Close]

BLAST of Csa1G257900 vs. NCBI nr
Match: gi|659086237|ref|XP_008443828.1| (PREDICTED: uncharacterized protein LOC103487330 [Cucumis melo])

HSP 1 Score: 373.6 bits (958), Expect = 2.0e-100
Identity = 187/189 (98.94%), Postives = 188/189 (99.47%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MVISSSNSHSKE+SIRKRIASIFNKREEDF SLREYNDYLEEVEDMTFNLIEGIDVQAIE
Sbjct: 1   MVISSSNSHSKEISIRKRIASIFNKREEDFPSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
           AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ
Sbjct: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120

Query: 121 YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE 180
           YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE
Sbjct: 121 YAPTFAGGQPRPTGQPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKRALE 180

Query: 181 EAFGSIWIC 190
           EAFGSIWIC
Sbjct: 181 EAFGSIWIC 189

[Close]

BLAST of Csa1G257900 vs. NCBI nr
Match: gi|1009109736|ref|XP_015891816.1| (PREDICTED: uncharacterized protein LOC107426208 [Ziziphus jujuba])

HSP 1 Score: 305.1 bits (780), Expect = 8.8e-80
Identity = 155/191 (81.15%), Postives = 168/191 (87.96%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MV+SSSN H+KE++IR+RIASIFNKRE+DF SLREYNDYLEEVEDMTFNLIEGIDV AIE
Sbjct: 1   MVVSSSNPHNKEIAIRRRIASIFNKREDDFPSLREYNDYLEEVEDMTFNLIEGIDVPAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
           AKIA+YQEENAEQIMINRARKAEE AAALAA KG  AQ+DNDG   QS QAG S G QGQ
Sbjct: 61  AKIAKYQEENAEQIMINRARKAEELAAALAACKGHTAQSDNDGVLGQSSQAGFSMGVQGQ 120

Query: 121 YAPTFAGGQPRPTG---QPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
           YAPT AGGQPRPTG   QP+PLG GPDMQGY  D+EEM++LRAERGGRAGGWSVE SRKR
Sbjct: 121 YAPTVAGGQPRPTGMAPQPIPLGGGPDMQGY--DEEEMMKLRAERGGRAGGWSVELSRKR 180

Query: 181 ALEEAFGSIWI 189
           A+EEAF SIWI
Sbjct: 181 AIEEAFSSIWI 189

[Close]

BLAST of Csa1G257900 vs. NCBI nr
Match: gi|595807504|ref|XP_007202619.1| (hypothetical protein PRUPE_ppa011901mg [Prunus persica])

HSP 1 Score: 298.9 bits (764), Expect = 6.3e-78
Identity = 152/191 (79.58%), Postives = 165/191 (86.39%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MV++SSN H+KE+ +RKRIASIFNKREEDF SL+EYNDYLEEVEDMTFNLI+GIDV AIE
Sbjct: 1   MVVTSSNPHNKEIVVRKRIASIFNKREEDFPSLKEYNDYLEEVEDMTFNLIDGIDVPAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
           AKIA+YQEENAEQIMINRARKAEE AAALAASKG PAQ D D A  Q  QAG  TGTQGQ
Sbjct: 61  AKIAKYQEENAEQIMINRARKAEELAAALAASKGHPAQNDTDAALSQGSQAGFGTGTQGQ 120

Query: 121 YAPTFAGGQPRPTG---QPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
           YAPT A GQPRPTG   QP+PLG G DM GY +DDEEM++LRAERGGRAGGWSVE SRKR
Sbjct: 121 YAPTVA-GQPRPTGMGPQPLPLGGGHDMHGYAVDDEEMIKLRAERGGRAGGWSVEISRKR 180

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIW+
Sbjct: 181 ALEEAFSSIWV 190

[Close]

BLAST of Csa1G257900 vs. NCBI nr
Match: gi|645275897|ref|XP_008243033.1| (PREDICTED: uncharacterized protein LOC103341305 [Prunus mume])

HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77
Identity = 152/191 (79.58%), Postives = 165/191 (86.39%), Query Frame = 1


Query: 1   MVISSSNSHSKEVSIRKRIASIFNKREEDFSSLREYNDYLEEVEDMTFNLIEGIDVQAIE 60
           MV++SSN H+KE+ +RKRIASIFNKREEDF SL+EYNDYLEEVEDMTFNLI+GIDV AIE
Sbjct: 1   MVVTSSNPHNKEIVVRKRIASIFNKREEDFPSLKEYNDYLEEVEDMTFNLIDGIDVPAIE 60

Query: 61  AKIARYQEENAEQIMINRARKAEEYAAALAASKGIPAQADNDGAADQSFQAGLSTGTQGQ 120
           AKIA+YQEENAEQIMINRARKAEE AAALAASKG PAQ D D A  Q  QAG  TGTQGQ
Sbjct: 61  AKIAKYQEENAEQIMINRARKAEELAAALAASKGHPAQNDTDVALSQGSQAGFGTGTQGQ 120

Query: 121 YAPTFAGGQPRPTG---QPVPLGAGPDMQGYGLDDEEMLRLRAERGGRAGGWSVEFSRKR 180
           YAPT A GQPRPTG   QP+PLG G DM GY +DDEEM++LRAERGGRAGGWSVE SRKR
Sbjct: 121 YAPTVA-GQPRPTGMGPQPLPLGGGHDMHGYAVDDEEMIKLRAERGGRAGGWSVEISRKR 180

Query: 181 ALEEAFGSIWI 189
           ALEEAF SIW+
Sbjct: 181 ALEEAFNSIWV 190

The following BLAST results are available for this feature:

BLAST of Csa1G257900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TFB3_SCHPO	8.9e-16	54.05	RNA polymerase II transcription factor B subunit 3 OS=Schizosaccharomyces pombe ...	[more]
MAT1_MOUSE	1.5e-15	48.84	CDK-activating kinase assembly factor MAT1 OS=Mus musculus GN=Mnat1 PE=1 SV=2	[more]
MAT1_MARGL	2.6e-15	48.68	CDK-activating kinase assembly factor MAT1 OS=Marthasterias glacialis PE=1 SV=1	[more]
MAT1_HUMAN	2.6e-15	48.84	CDK-activating kinase assembly factor MAT1 OS=Homo sapiens GN=MNAT1 PE=1 SV=1	[more]
MAT1_XENLA	2.6e-15	50.00	CDK-activating kinase assembly factor MAT1 OS=Xenopus laevis GN=mnat1 PE=2 SV=1	[more]

BLAST of Csa1G257900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW26_CUCSA	2.8e-101	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257900 PE=4 SV=1	[more]
M5W3I2_PRUPE	4.4e-78	79.58	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011901mg PE=4 SV=1	[more]
A0A0D2TZW1_GOSRA	1.7e-77	77.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G090500 PE=4 SV=1	[more]
A0A0B0NBW9_GOSAR	2.0e-75	76.96	CDK-activating kinase assembly factor MAT1 OS=Gossypium arboreum GN=F383_03230 P...	[more]
A0A059CT66_EUCGR	7.7e-75	75.39	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02513 PE=4 SV=1	[more]

BLAST of Csa1G257900 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30820.1	3.2e-48	52.88	cyclin-dependent kinase-activating kinase assembly factor-related / ...	[more]

BLAST of Csa1G257900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457867\|ref\|XP_004146669.1\|	4.1e-101	100.00	PREDICTED: uncharacterized protein LOC101207027 [Cucumis sativus]	[more]
gi\|659086237\|ref\|XP_008443828.1\|	2.0e-100	98.94	PREDICTED: uncharacterized protein LOC103487330 [Cucumis melo]	[more]
gi\|1009109736\|ref\|XP_015891816.1\|	8.8e-80	81.15	PREDICTED: uncharacterized protein LOC107426208 [Ziziphus jujuba]	[more]
gi\|595807504\|ref\|XP_007202619.1\|	6.3e-78	79.58	hypothetical protein PRUPE_ppa011901mg [Prunus persica]	[more]
gi\|645275897\|ref\|XP_008243033.1\|	1.4e-77	79.58	PREDICTED: uncharacterized protein LOC103341305 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004575	MAT1/Tfb3
IPR015877	Cdk-activating_kinase_MAT1_cen

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0007049	cell cycle

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006412	translation
biological_process	GO:0006289	nucleotide-excision repair
biological_process	GO:0045737	positive regulation of cyclin-dependent protein serine/threonine kinase activity
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005675	holo TFIIH complex
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0061575	cyclin-dependent protein serine/threonine kinase activator activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU086589	cucumber EST collection version 3.0	transcribed_cluster
CU104606	cucumber EST collection version 3.0	transcribed_cluster
CU105008	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G257900.1	Csa1G257900.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU086589	CU086589	transcribed_cluster
CU105008	CU105008	transcribed_cluster
CU104606	CU104606	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004575	Cdk-activating kinase assembly factor MAT1/Tfb3	PANTHER	PTHR12683	FAMILY NOT NAMED	coord: 11..188 score: 4.3
IPR015877	Cdk-activating kinase assembly factor MAT1, centre	PFAM	PF06391	MAT1	coord: 11..87 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G257900	Cla018753	Watermelon (97103) v1	cuwmB085
Csa1G257900	MELO3C010201	Melon (DHL92) v3.5.1	cumeB060
Csa1G257900	ClCG06G012630	Watermelon (Charleston Gray)	cuwcgB072
Csa1G257900	Lsi06G010790	Bottle gourd (USVL1VR-Ls)	culsiB066
Csa1G257900	MELO3C010201.2	Melon (DHL92) v3.6.1	cumedB053
Csa1G257900	Cla97C06G121840	Watermelon (97103) v2	cuwmbB071
Csa1G257900	Bhi02G000661	Wax gourd	cuwgoB103
Csa1G257900	CSPI01G17960	Wild cucumber (PI 183967)	cpicuB004
Csa1G257900	Cucsa.170730	Cucumber (Gy14) v1	cgycuB260
Csa1G257900	CmaCh11G004430	Cucurbita maxima (Rimu)	cmacuB102
Csa1G257900	CmoCh11G004440	Cucurbita moschata (Rifu)	cmocuB091
Csa1G257900	Cp4.1LG04g12620	Cucurbita pepo (Zucchini)	cpecuB641
Csa1G257900	CsGy1G018030	Cucumber (Gy14) v2	cgybcuB006
Csa1G257900	Carg14074	Silver-seed gourd	carcuB0532

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G257900	Silver-seed gourd	carcuB0136
Csa1G257900	Cucumber (Chinese Long) v2	cucuB009
Csa1G257900	Cucumber (Gy14) v1	cgycuB095
Csa1G257900	Cucurbita maxima (Rimu)	cmacuB067
Csa1G257900	Cucurbita moschata (Rifu)	cmocuB056
Csa1G257900	Cucurbita pepo (Zucchini)	cpecuB356
Csa1G257900	Bottle gourd (USVL1VR-Ls)	culsiB011
Csa1G257900	Cucumber (Gy14) v2	cgybcuB008