Csa1G257330 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G257330
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12590817 .. 12591299 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATTTCCCGGAAAATGTAAGCGATTGTAAAATTCCCCAAAACATATCTCACTCAAACTTTATATAAATCTATACCATCACTCACAAATTTACATCAATTAATTCTCTTTCTCTTAAACCCCTCCAATGGCTGCTGCAATTCACCGCTTCTTACTTCCGATTGCCCTTATTTCTCTTCTCCTTTTCTCTGAATCTCTCCCAGCTATCTCCTCTTCCGATCATATCCAGGATTCCAATCGGCCAGGGGACAAGGATTCCGGCACCTCCTTGACCGAAAAAATCAGTATCAAAAGAGGAGTTCGGTCCGGTGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTCGTTCTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGCTTGCGATGTTCTTGTGATTTTCTTTTACTCATATACGATTCTCCATTCAATTCATTTAATTTTTGTTACACAGA

mRNA sequence

ATGGCTGCTGCAATTCACCGCTTCTTACTTCCGATTGCCCTTATTTCTCTTCTCCTTTTCTCTGAATCTCTCCCAGCTATCTCCTCTTCCGATCATATCCAGGATTCCAATCGGCCAGGGGACAAGGATTCCGGCACCTCCTTGACCGAAAAAATCAGTATCAAAAGAGGAGTTCGGTCCGGTGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTCGTTCTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGCTTGCGATGTTCTTGTGA

Coding sequence (CDS)

ATGGCTGCTGCAATTCACCGCTTCTTACTTCCGATTGCCCTTATTTCTCTTCTCCTTTTCTCTGAATCTCTCCCAGCTATCTCCTCTTCCGATCATATCCAGGATTCCAATCGGCCAGGGGACAAGGATTCCGGCACCTCCTTGACCGAAAAAATCAGTATCAAAAGAGGAGTTCGGTCCGGTGTAATTGCAGGTCGTTCGACTACATCGTCGTCCGCCCGAGTGTCGTCGTCGTCGTTCTTTAATGTGGGCTCTGTGATTTGTTTCAACATAGCGTTTGTGCTTGCGATGTTCTTGTGA

Protein sequence

MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL*
Homology
[Close]
BLAST of Csa1G257330 vs. TrEMBL
Match: A0A0A0LYV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 5.7e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS 60
           MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS
Sbjct: 1   MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS 60

Query: 61  GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 100
           GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL
Sbjct: 61  GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

[Close]
BLAST of Csa1G257330 vs. NCBI nr
Match: gi|700210080|gb|KGN65176.1| (hypothetical protein Csa_1G257330 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 8.2e-45
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

Query: 1   MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS 60
           MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS
Sbjct: 1   MAAAIHRFLLPIALISLLLFSESLPAISSSDHIQDSNRPGDKDSGTSLTEKISIKRGVRS 60

Query: 61  GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 100
           GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL
Sbjct: 61  GVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

The following BLAST results are available for this feature:
BLAST of Csa1G257330 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYV9_CUCSA5.7e-45100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G257330 PE=4 SV=1[more]
BLAST of Csa1G257330 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210080|gb|KGN65176.1|8.2e-45100.00hypothetical protein Csa_1G257330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU172391cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G257330.1Csa1G257330.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU172391CU172391transcribed_cluster