Csa1G256180 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G256180
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12519381 .. 12519817 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTTGAGAGAGAGAGTCAACTTTTTGAAATCCAACCGCTCCATACTCTTTATTAATTCATCTTCTTCACCAAATCCAATAAATTTAAAATCCCATCTTCTTTTTCCGCCATTCTTCATTACCCAAATCATAGTTTTTCTCAGAAAAGTAAGGGAAAAAAAGAAAAGAAAAGGTATTTACAGATTATCAATTTCGTCTTTTTTCTTTTGTTTTCCTCTGTTTTTCAGCTCGAGAGTCGTGTAATTTTATATTTCAATTTGTTTTTTCTTTTATATTTGGAGCTTCTTGATCCTGTTGTTGGTTGTGTGTTCTCTTCTTATTTGATTATCTTTGGGTTGGTTTCTTTTCTAATTTTAGCTTGTTTCTGTTCTTTGTGTTTCTACGATTTTGCAGGAGAGATTATTCCTCTGTTTAGCGATATCTTGAGAAATTGA

mRNA sequence

ATGAAGTTGAGAGAGAGAGTCAACTTTTTGAAATCCAACCGCTCCATACTCTTTATTAATTCATCTTCTTCACCAAATCCAATAAATTTAAAATCCCATCTTCTTTTTCCGCCATTCTTCATTACCCAAATCATAGTTTTTCTCAGAAAAGTAAGGGAAAAAAAGAAAAGAAAAGGAGAGATTATTCCTCTGTTTAGCGATATCTTGAGAAATTGA

Coding sequence (CDS)

ATGAAGTTGAGAGAGAGAGTCAACTTTTTGAAATCCAACCGCTCCATACTCTTTATTAATTCATCTTCTTCACCAAATCCAATAAATTTAAAATCCCATCTTCTTTTTCCGCCATTCTTCATTACCCAAATCATAGTTTTTCTCAGAAAAGTAAGGGAAAAAAAGAAAAGAAAAGGAGAGATTATTCCTCTGTTTAGCGATATCTTGAGAAATTGA

Protein sequence

MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGEIIPLFSDILRN*
Homology
[Close]
BLAST of Csa1G256180 vs. TrEMBL
Match: A0A0A0LTQ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256180 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 5.8e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE 60
          MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE
Sbjct: 1  MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE 60

Query: 61 IIPLFSDILRN 72
          IIPLFSDILRN
Sbjct: 61 IIPLFSDILRN 71

[Close]
BLAST of Csa1G256180 vs. NCBI nr
Match: gi|700210062|gb|KGN65158.1| (hypothetical protein Csa_1G256180 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 8.3e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

Query: 1  MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE 60
          MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE
Sbjct: 1  MKLRERVNFLKSNRSILFINSSSSPNPINLKSHLLFPPFFITQIIVFLRKVREKKKRKGE 60

Query: 61 IIPLFSDILRN 72
          IIPLFSDILRN
Sbjct: 61 IIPLFSDILRN 71

The following BLAST results are available for this feature:
BLAST of Csa1G256180 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTQ0_CUCSA5.8e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G256180 PE=4 SV=1[more]
BLAST of Csa1G256180 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210062|gb|KGN65158.1|8.3e-31100.00hypothetical protein Csa_1G256180 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU146399cucumber EST collection version 3.0transcribed_cluster
CU159341cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G256180.1Csa1G256180.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU159341CU159341transcribed_cluster
CU146399CU146399transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G256180CsGy1G017850Cucumber (Gy14) v2cgybcuB006
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G256180Melon (DHL92) v3.6.1cumedB044
Csa1G256180Melon (DHL92) v3.6.1cumedB053
Csa1G256180Silver-seed gourdcarcuB0136
Csa1G256180Silver-seed gourdcarcuB0532
Csa1G256180Watermelon (97103) v2cuwmbB071
Csa1G256180Wax gourdcuwgoB103
Csa1G256180Cucumber (Gy14) v1cgycuB099
Csa1G256180Cucurbita maxima (Rimu)cmacuB067
Csa1G256180Cucurbita maxima (Rimu)cmacuB102
Csa1G256180Cucurbita moschata (Rifu)cmocuB056
Csa1G256180Cucurbita moschata (Rifu)cmocuB091
Csa1G256180Melon (DHL92) v3.5.1cumeB052
Csa1G256180Melon (DHL92) v3.5.1cumeB060
Csa1G256180Watermelon (Charleston Gray)cuwcgB072
Csa1G256180Watermelon (97103) v1cuwmB085
Csa1G256180Cucurbita pepo (Zucchini)cpecuB356
Csa1G256180Cucurbita pepo (Zucchini)cpecuB641
Csa1G256180Bottle gourd (USVL1VR-Ls)culsiB066
Csa1G256180Bottle gourd (USVL1VR-Ls)culsiB076