Csa1G230010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G230010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 12048356 .. 12048777 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCCTACAAAAGATTGCAGAGTGTAAGGAATTACATTCAGTCCAAGGTAAAAAGTCTTCAAAATCAAAAGAAGAAAAAAGAGAGTATGTACCAAGAAATTTGAAATAGACAAAGAATTTGGGTTTGATTTTGCGATGATCATGTGTAGAGGTGAAGTTGAATGATGAAAGTGAAGTGGAAAATTTAGGACAAAGAAGATGAGGGAATGGATGAAAATGGAGGCACTGCTAGTTTGAAAGTTGCCAAACTGAAACAAAGCAGTGGCGTGATCGAGGATACTGAAGATACGGTCAAGAGATAGAAGGAGGAAGAGAGCCACACCATGAAAATTAGGGCAAAGAAGAAGAATAATTTGTTGACAGTTCCGACACTACCAATAATGTGTTGACAGTTCCACGAACAACTCCTGACGCTCTC

mRNA sequence

ATGCCATCCTACAAAAGATTGCAGAGTGTAAGGAATTACATTCAGTCCAAGGACAAAGAAGATGAGGGAATGGATGAAAATGGAGGCACTGCTAGTTTGAAAGTTGCCAAACTGAAACAAAGCAGTGGCGTGATCGAGGATACTGAAGATACGGTCAAGAGATAG

Coding sequence (CDS)

ATGCCATCCTACAAAAGATTGCAGAGTGTAAGGAATTACATTCAGTCCAAGGACAAAGAAGATGAGGGAATGGATGAAAATGGAGGCACTGCTAGTTTGAAAGTTGCCAAACTGAAACAAAGCAGTGGCGTGATCGAGGATACTGAAGATACGGTCAAGAGATAG

Protein sequence

MPSYKRLQSVRNYIQSKDKEDEGMDENGGTASLKVAKLKQSSGVIEDTEDTVKR*
Homology
[Close]
BLAST of Csa1G230010 vs. TrEMBL
Match: A0A0A0LWC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G230010 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.4e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MPSYKRLQSVRNYIQSKDKEDEGMDENGGTASLKVAKLKQSSGVIEDTEDTVKR 55
          MPSYKRLQSVRNYIQSKDKEDEGMDENGGTASLKVAKLKQSSGVIEDTEDTVKR
Sbjct: 1  MPSYKRLQSVRNYIQSKDKEDEGMDENGGTASLKVAKLKQSSGVIEDTEDTVKR 54

[Close]
BLAST of Csa1G230010 vs. NCBI nr
Match: gi|700210031|gb|KGN65127.1| (hypothetical protein Csa_1G230010 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 3.5e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 

Query: 1  MPSYKRLQSVRNYIQSKDKEDEGMDENGGTASLKVAKLKQSSGVIEDTEDTVKR 55
          MPSYKRLQSVRNYIQSKDKEDEGMDENGGTASLKVAKLKQSSGVIEDTEDTVKR
Sbjct: 1  MPSYKRLQSVRNYIQSKDKEDEGMDENGGTASLKVAKLKQSSGVIEDTEDTVKR 54

The following BLAST results are available for this feature:
BLAST of Csa1G230010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LWC2_CUCSA2.4e-21100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G230010 PE=4 SV=1[more]
BLAST of Csa1G230010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700210031|gb|KGN65127.1|3.5e-21100.00hypothetical protein Csa_1G230010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G230010.1Csa1G230010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G230010Watermelon (97103) v1cuwmB097
Csa1G230010Cucurbita pepo (Zucchini)cpecuB365
Csa1G230010Cucurbita pepo (Zucchini)cpecuB657
Csa1G230010Bottle gourd (USVL1VR-Ls)culsiB074
Csa1G230010Cucumber (Gy14) v2cgybcuB009
Csa1G230010Melon (DHL92) v3.6.1cumedB038
Csa1G230010Silver-seed gourdcarcuB0035
Csa1G230010Silver-seed gourdcarcuB0137
Csa1G230010Watermelon (97103) v2cuwmbB081
Csa1G230010Wax gourdcuwgoB084
Csa1G230010Cucumber (Gy14) v1cgycuB008
Csa1G230010Cucurbita maxima (Rimu)cmacuB052
Csa1G230010Cucurbita maxima (Rimu)cmacuB090
Csa1G230010Cucurbita moschata (Rifu)cmocuB041
Csa1G230010Cucurbita moschata (Rifu)cmocuB078
Csa1G230010Melon (DHL92) v3.5.1cumeB047
Csa1G230010Watermelon (Charleston Gray)cuwcgB084