Csa1G189180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G189180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 11363794 .. 11364216 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

mRNA sequence

ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

Coding sequence (CDS)

ATGAAGATAAAGTGTAGGGATGGTTTTCAGGAACGTATTAGTAAATTAGTGCAAGGTAGGCCATTTTTCATTTGGGCCAGGCCATCTGTAGAAATCATCCGGGAGATATCTATTCGCGACTCTTGGGCTCGTAATTTTCAGTATCATCCTCCTCCCCTCTCGATTCCAATTACTGTTGGCAGTCTAGCTGTAGGATTGGGCTGTAAGTCTGTTATTTGTGCTTCCGTGATAAGTATATCACGACCTGCTTTGTTTCTTTCCTTGATCACCAAAAATTTACATGAACTATCCACATTTCTATCAAATGCAGTGTCAATCGTTCTCTCACTCTTTCATTGTCTTAGATGCCATACCAAATTAGATGGTGTTGTTGCAAATGTGAAATCAATTCTTTTGAAGATATTTGTGTACCATCAAAGCTGA

Protein sequence

MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVGSLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKLDGVVANVKSILLKIFVYHQS*

Homology

[Close]

BLAST of Csa1G189180 vs. TrEMBL
Match: A0A0A0LW77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G189180 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 7.0e-73
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60
           MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG
Sbjct: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60

Query: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120
           SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL
Sbjct: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120

Query: 121 DGVVANVKSILLKIFVYHQS 141
           DGVVANVKSILLKIFVYHQS
Sbjct: 121 DGVVANVKSILLKIFVYHQS 140

[Close]

BLAST of Csa1G189180 vs. NCBI nr
Match: gi|700209971|gb|KGN65067.1| (hypothetical protein Csa_1G189180 [Cucumis sativus])

HSP 1 Score: 281.2 bits (718), Expect = 1.0e-72
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1


Query: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60
           MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG
Sbjct: 1   MKIKCRDGFQERISKLVQGRPFFIWARPSVEIIREISIRDSWARNFQYHPPPLSIPITVG 60

Query: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120
           SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL
Sbjct: 61  SLAVGLGCKSVICASVISISRPALFLSLITKNLHELSTFLSNAVSIVLSLFHCLRCHTKL 120

Query: 121 DGVVANVKSILLKIFVYHQS 141
           DGVVANVKSILLKIFVYHQS
Sbjct: 121 DGVVANVKSILLKIFVYHQS 140

The following BLAST results are available for this feature:

BLAST of Csa1G189180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW77_CUCSA	7.0e-73	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G189180 PE=4 SV=1	[more]

BLAST of Csa1G189180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209971\|gb\|KGN65067.1\|	1.0e-72	100.00	hypothetical protein Csa_1G189180 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G189180.1	Csa1G189180.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G189180	Cucumber (Gy14) v1	cgycuB016
Csa1G189180	Cucurbita maxima (Rimu)	cmacuB210
Csa1G189180	Cucurbita moschata (Rifu)	cmocuB196
Csa1G189180	Melon (DHL92) v3.5.1	cumeB020
Csa1G189180	Watermelon (Charleston Gray)	cuwcgB019
Csa1G189180	Watermelon (Charleston Gray)	cuwcgB022
Csa1G189180	Watermelon (97103) v1	cuwmB048
Csa1G189180	Watermelon (97103) v1	cuwmB051
Csa1G189180	Cucurbita pepo (Zucchini)	cpecuB020
Csa1G189180	Cucurbita pepo (Zucchini)	cpecuB056
Csa1G189180	Cucurbita pepo (Zucchini)	cpecuB521
Csa1G189180	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G189180	Bottle gourd (USVL1VR-Ls)	culsiB020
Csa1G189180	Cucumber (Gy14) v2	cgybcuB001
Csa1G189180	Cucumber (Gy14) v2	cgybcuB240
Csa1G189180	Melon (DHL92) v3.6.1	cumedB015
Csa1G189180	Silver-seed gourd	carcuB1051
Csa1G189180	Watermelon (97103) v2	cuwmbB005
Csa1G189180	Watermelon (97103) v2	cuwmbB009
Csa1G189180	Wax gourd	cuwgoB036
Csa1G189180	Wax gourd	cuwgoB058