Csa1G181490 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G181490
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 11096622 .. 11097007 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACGTAAATATTGATAGTTCTTTATCTCTGTTTATCTAAGAAAAATAAATAACTATCCTAGTCTACCCTTCATTGTTCTTCTTATAAACTCCAATATTTTCTTGCAGCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCAGTGATAGCGAAGAAGATGCAGAAGAAGAAATATGA

mRNA sequence

ATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCAGTGATAGCGAAGAAGATGCAGAAGAAGAAATATGA

Coding sequence (CDS)

ATGAAACATTATATGAAAGTGATGAAGAAGGAAAATATGAGAAGGAAAACCAAAAGAAAACAAAGCCAAGAGCAAAACCAAATCATTGAAGAAAAGAAACTAGAAAAAGAGGATGAGGAAGTGAAAGAAGAGCAAAATCAAGAAGATATAGATAATGAGAGTGAAGAAATTTTGTTTACAATAAGAAGAAGACAAAAGGGAAAACTAGTTGTTGATGATGACGATGAAACAGAAGAAGAGATTGCCAGTGATAGCGAAGAAGATGCAGAAGAAGAAATATGA

Protein sequence

MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFTIRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI*
Homology
[Close]
BLAST of Csa1G181490 vs. Swiss-Prot
Match: GARP_PLAFF (Glutamic acid-rich protein OS=Plasmodium falciparum (isolate FC27 / Papua New Guinea) GN=GARP PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.1e-06
Identity = 25/86 (29.07%), Postives = 52/86 (60.47%), Query Frame = 1 

Query: 7   VMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFTIRRRQK 66
           V K+E+ + ++K  Q + +    +E+++E+++EE +EE+ +E+ + E EE        ++
Sbjct: 545 VDKEEDKKEESKEVQEESKEVQEDEEEVEEDEEEEEEEEEEEEEEEEEEE-----EEEEE 604

Query: 67  GKLVVDDDDETEEEIASDSEEDAEEE 93
            +   +D+DE +E+ A + E+DAEE+
Sbjct: 605 EEEEEEDEDEEDEDDAEEDEDDAEED 625

[Close]
BLAST of Csa1G181490 vs. TrEMBL
Match: A0A0A0LW59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181490 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60
          MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT
Sbjct: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60

Query: 61 IRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI 94
          IRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI
Sbjct: 61 IRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI 93

[Close]
BLAST of Csa1G181490 vs. NCBI nr
Match: gi|700209941|gb|KGN65037.1| (hypothetical protein Csa_1G181490 [Cucumis sativus])

HSP 1 Score: 183.7 bits (465), Expect = 1.5e-43
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1 

Query: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60
          MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT
Sbjct: 1  MKHYMKVMKKENMRRKTKRKQSQEQNQIIEEKKLEKEDEEVKEEQNQEDIDNESEEILFT 60

Query: 61 IRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI 94
          IRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI
Sbjct: 61 IRRRQKGKLVVDDDDETEEEIASDSEEDAEEEI 93

The following BLAST results are available for this feature:
BLAST of Csa1G181490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GARP_PLAFF4.1e-0629.07Glutamic acid-rich protein OS=Plasmodium falciparum (isolate FC27 / Papua New Gu... [more]
BLAST of Csa1G181490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW59_CUCSA1.0e-43100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181490 PE=4 SV=1[more]
BLAST of Csa1G181490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209941|gb|KGN65037.1|1.5e-43100.00hypothetical protein Csa_1G181490 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G181490.1Csa1G181490.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 19..56
scor