Csa1G177740 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G177740
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSodium/hydrogen exchanger
LocationChr1 : 10851135 .. 10851635 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGATGGGTTCATGTATAAATTCCTGTACACTTCTTTTCAAAATAACAATGAGAATCTGCCAATTGTTCTTCTAGATTCATGCGCTGGAAACAAGCTGGGGAATAGCCTTGCTATTGTTACAGTATTAATGAAACACAAAATCTTTTAATCTTTTGTTCTTTTTTTCTCTCAGACCACTGATGCAAGCAACGGCTACATTGCTCCTTATAATGATGAAGGATCATCAAGGAGTAGAATCAAAATGAAACTTAAAGAGTTCCATGAGAGGTGGCATCTAATATCCTTCTTTCATTTTAGGACTTTCTTTTTGTTGAGTCATCATTAAAATGCCTCTTTTTTTTTTTCTCTCCACAGTACTGCATCGTTTACAGCTTTGAATAGAAACTACCTGACCCCATTCTTTAAGAGTCGCAGTGGTGATGATGAGGAAGATGACAACAGTAAGAATGACTTAAACTCTGTTCATGGTTTTATCAGTTCGATACTTTGTGTATAG

mRNA sequence

ATGCTTGATGGGTTCATGTATAAATTCCTGTACACTTCTTTTCAAAATAACAATGAGAATCTGCCAATTGTTCTTCTAGATTCATGCGCTGGAAACAAGCTGGGGAATAGCCTTGCTATTGTTACAACCACTGATGCAAGCAACGGCTACATTGCTCCTTATAATGATGAAGGATCATCAAGGAGTAGAATCAAAATGAAACTTAAAGAGTTCCATGAGAGTACTGCATCGTTTACAGCTTTGAATAGAAACTACCTGACCCCATTCTTTAAGAGTCGCAGTGGTGATGATGAGGAAGATGACAACAGTAAGAATGACTTAAACTCTGTTCATGGTTTTATCAGTTCGATACTTTGTGTATAG

Coding sequence (CDS)

ATGCTTGATGGGTTCATGTATAAATTCCTGTACACTTCTTTTCAAAATAACAATGAGAATCTGCCAATTGTTCTTCTAGATTCATGCGCTGGAAACAAGCTGGGGAATAGCCTTGCTATTGTTACAACCACTGATGCAAGCAACGGCTACATTGCTCCTTATAATGATGAAGGATCATCAAGGAGTAGAATCAAAATGAAACTTAAAGAGTTCCATGAGAGTACTGCATCGTTTACAGCTTTGAATAGAAACTACCTGACCCCATTCTTTAAGAGTCGCAGTGGTGATGATGAGGAAGATGACAACAGTAAGAATGACTTAAACTCTGTTCATGGTTTTATCAGTTCGATACTTTGTGTATAG

Protein sequence

MLDGFMYKFLYTSFQNNNENLPIVLLDSCAGNKLGNSLAIVTTTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFISSILCV*
Homology
[Close]
BLAST of Csa1G177740 vs. Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 56  DEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEED 101
           D  SS SR KMKLKEFH++T SFTAL++N+LTPFF + SGD + D
Sbjct: 475 DTSSSGSRFKMKLKEFHKTTTSFTALDKNFLTPFFTTNSGDGDGD 519

[Close]
BLAST of Csa1G177740 vs. Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3)

HSP 1 Score: 60.1 bits (144), Expect = 2.0e-08
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1 

Query: 21  LPIVLLDSCAGNKLGNSLAIVTTTDASNG---------YIAPYNDEGSSR-SRIKMKLKE 80
           L ++L+    G  L     +  + D S G         Y+  Y+DE +   S  + KL+E
Sbjct: 423 LTVLLIGGSTGTMLEALEVVGDSHDTSLGDGFEVVNSRYMTSYDDEDTPPGSGFRTKLRE 482

Query: 81  FHESTASFTALNRNYLTPFFKSRSGDDEEDDN 103
           FH+S ASFT L+RNYLTPFF S +GD +++ N
Sbjct: 483 FHKSAASFTELDRNYLTPFFTSNNGDYDDEGN 514

[Close]
BLAST of Csa1G177740 vs. TrEMBL
Match: A0A0A0LW39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G177740 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 4.8e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MLDGFMYKFLYTSFQNNNENLPIVLLDSCAGNKLGNSLAIVTTTDASNGYIAPYNDEGSS 60
           MLDGFMYKFLYTSFQNNNENLPIVLLDSCAGNKLGNSLAIVTTTDASNGYIAPYNDEGSS
Sbjct: 1   MLDGFMYKFLYTSFQNNNENLPIVLLDSCAGNKLGNSLAIVTTTDASNGYIAPYNDEGSS 60

Query: 61  RSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFISSILCV 120
           RSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFISSILCV
Sbjct: 61  RSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFISSILCV 120

[Close]
BLAST of Csa1G177740 vs. TrEMBL
Match: Q0IJY4_POPTO (Sodium/hydrogen exchanger OS=Populus tomentosa GN=NHX2 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 6.8e-16
Identity = 43/71 (60.56%), Postives = 57/71 (80.28%), Query Frame = 1 

Query: 45  DASNGYIAP-YNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNS 104
           D +NGY+AP YN++ +S +R+KMKLKEFH+STASFTAL+RNYLTPFF S+SGDDEE+ + 
Sbjct: 453 DGNNGYVAPSYNEDATSGNRLKMKLKEFHKSTASFTALDRNYLTPFFTSQSGDDEEEHDD 512

Query: 105 KNDLNSVHGFI 115
               +   GF+
Sbjct: 513 PMPSSRGRGFL 523

[Close]
BLAST of Csa1G177740 vs. TrEMBL
Match: U5FJH8_POPTR (Sodium/hydrogen exchanger OS=Populus trichocarpa GN=POPTR_0016s00210g PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 42/71 (59.15%), Postives = 57/71 (80.28%), Query Frame = 1 

Query: 45  DASNGYIAP-YNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNS 104
           D +NGY+AP YN++ +S +R+KMKLKEFH+STASFTAL+RNYLTPFF S++GDDEE+ + 
Sbjct: 464 DGNNGYVAPSYNEDATSGNRLKMKLKEFHKSTASFTALDRNYLTPFFTSQNGDDEEEHDD 523

Query: 105 KNDLNSVHGFI 115
               +   GF+
Sbjct: 524 PMPSSRGRGFL 534

[Close]
BLAST of Csa1G177740 vs. TrEMBL
Match: D0E4I2_POPEU (Sodium/hydrogen exchanger OS=Populus euphratica GN=NHX6 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-15
Identity = 40/57 (70.18%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 45  DASNGYIAP-YNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEED 101
           D +NGY+AP YN++ +S +R+KMKLKEFH+STASFTAL+RNYLTPFF S++GDDEE+
Sbjct: 466 DGNNGYVAPSYNEDATSGNRLKMKLKEFHKSTASFTALDRNYLTPFFTSQNGDDEEE 522

[Close]
BLAST of Csa1G177740 vs. TrEMBL
Match: A0A061GPM7_THECC (Sodium/hydrogen exchanger OS=Theobroma cacao GN=TCM_030490 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.5e-15
Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1 

Query: 21  LPIVLLDSCAGNKLGNSLAIV---------TTTDASNGYIAP-YNDEGSSRSRIKMKLKE 80
           L ++L+    G  LG +L +V            D +NGY+AP YN++G++ +R KMKLKE
Sbjct: 419 LTVLLIGGSTGTMLG-ALQVVGDGHDGHLGEIFDGNNGYVAPTYNEDGTTGNRFKMKLKE 478

Query: 81  FHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGF 114
           FH+STASF+AL+RNYLTPFF S++GDDEE+ +     +   GF
Sbjct: 479 FHKSTASFSALDRNYLTPFFTSQNGDDEEEHDDPMPSSRNGGF 520

[Close]
BLAST of Csa1G177740 vs. TAIR10
Match: AT1G54370.1 (AT1G54370.1 sodium hydrogen exchanger 5)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-11
Identity = 29/45 (64.44%), Postives = 34/45 (75.56%), Query Frame = 1 

Query: 56  DEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEED 101
           D  SS SR KMKLKEFH++T SFTAL++N+LTPFF + SGD + D
Sbjct: 475 DTSSSGSRFKMKLKEFHKTTTSFTALDKNFLTPFFTTNSGDGDGD 519

[Close]
BLAST of Csa1G177740 vs. TAIR10
Match: AT1G79610.1 (AT1G79610.1 Na+/H+ antiporter 6)

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1 

Query: 21  LPIVLLDSCAGNKLGNSLAIVTTTDASNG---------YIAPYNDEGSSR-SRIKMKLKE 80
           L ++L+    G  L     +  + D S G         Y+  Y+DE +   S  + KL+E
Sbjct: 423 LTVLLIGGSTGTMLEALEVVGDSHDTSLGDGFEVVNSRYMTSYDDEDTPPGSGFRTKLRE 482

Query: 81  FHESTASFTALNRNYLTPFFKSRSGDDEEDDN 103
           FH+S ASFT L+RNYLTPFF S +GD +++ N
Sbjct: 483 FHKSAASFTELDRNYLTPFFTSNNGDYDDEGN 514

[Close]
BLAST of Csa1G177740 vs. NCBI nr
Match: gi|700209911|gb|KGN65007.1| (hypothetical protein Csa_1G177740 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 6.9e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MLDGFMYKFLYTSFQNNNENLPIVLLDSCAGNKLGNSLAIVTTTDASNGYIAPYNDEGSS 60
           MLDGFMYKFLYTSFQNNNENLPIVLLDSCAGNKLGNSLAIVTTTDASNGYIAPYNDEGSS
Sbjct: 1   MLDGFMYKFLYTSFQNNNENLPIVLLDSCAGNKLGNSLAIVTTTDASNGYIAPYNDEGSS 60

Query: 61  RSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFISSILCV 120
           RSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFISSILCV
Sbjct: 61  RSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDNSKNDLNSVHGFISSILCV 120

[Close]
BLAST of Csa1G177740 vs. NCBI nr
Match: gi|778659666|ref|XP_011654824.1| (PREDICTED: sodium/hydrogen exchanger 6-like isoform X1 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 7.2e-27
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 31  GNKLGNSLAIVTTTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFF 90
           G+   +  ++  TTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFF
Sbjct: 502 GDSDDHEYSLTETTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFF 561

Query: 91  KSRSGDDEEDDNS 104
           KSRSGDDEEDDNS
Sbjct: 562 KSRSGDDEEDDNS 574

[Close]
BLAST of Csa1G177740 vs. NCBI nr
Match: gi|778659669|ref|XP_011654826.1| (PREDICTED: sodium/hydrogen exchanger 6-like isoform X2 [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 7.2e-27
Identity = 62/73 (84.93%), Postives = 66/73 (90.41%), Query Frame = 1 

Query: 31  GNKLGNSLAIVTTTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFF 90
           G+   +  ++  TTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFF
Sbjct: 445 GDSDDHEYSLTETTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFF 504

Query: 91  KSRSGDDEEDDNS 104
           KSRSGDDEEDDNS
Sbjct: 505 KSRSGDDEEDDNS 517

[Close]
BLAST of Csa1G177740 vs. NCBI nr
Match: gi|659128689|ref|XP_008464323.1| (PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis melo])

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1 

Query: 43  TTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDN 102
           TTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDN
Sbjct: 276 TTDASNGYIAPYNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEEDDN 335

Query: 103 S 104
           S
Sbjct: 336 S 336

[Close]
BLAST of Csa1G177740 vs. NCBI nr
Match: gi|657966763|ref|XP_008375081.1| (PREDICTED: sodium/hydrogen exchanger 6 isoform X2 [Malus domestica])

HSP 1 Score: 92.0 bits (227), Expect = 7.4e-16
Identity = 43/57 (75.44%), Postives = 53/57 (92.98%), Query Frame = 1 

Query: 45  DASNGYIAP-YNDEGSSRSRIKMKLKEFHESTASFTALNRNYLTPFFKSRSGDDEED 101
           + +NGYIAP YNDEGSS +RIKMKLKEFH+STASFTAL+RNYLTPFF S++GD+E++
Sbjct: 463 EGNNGYIAPSYNDEGSSGNRIKMKLKEFHQSTASFTALDRNYLTPFFTSQNGDEEDE 519

The following BLAST results are available for this feature:
BLAST of Csa1G177740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NHX5_ARATH1.4e-0964.44Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=2[more]
NHX6_ARATH2.0e-0838.04Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3[more]
BLAST of Csa1G177740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LW39_CUCSA4.8e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G177740 PE=4 SV=1[more]
Q0IJY4_POPTO6.8e-1660.56Sodium/hydrogen exchanger OS=Populus tomentosa GN=NHX2 PE=2 SV=1[more]
U5FJH8_POPTR1.5e-1559.15Sodium/hydrogen exchanger OS=Populus trichocarpa GN=POPTR_0016s00210g PE=3 SV=1[more]
D0E4I2_POPEU5.7e-1570.18Sodium/hydrogen exchanger OS=Populus euphratica GN=NHX6 PE=2 SV=1[more]
A0A061GPM7_THECC7.5e-1546.60Sodium/hydrogen exchanger OS=Theobroma cacao GN=TCM_030490 PE=3 SV=1[more]
BLAST of Csa1G177740 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54370.17.7e-1164.44 sodium hydrogen exchanger 5[more]
AT1G79610.11.1e-0938.04 Na+/H+ antiporter 6[more]
BLAST of Csa1G177740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209911|gb|KGN65007.1|6.9e-62100.00hypothetical protein Csa_1G177740 [Cucumis sativus][more]
gi|778659666|ref|XP_011654824.1|7.2e-2784.93PREDICTED: sodium/hydrogen exchanger 6-like isoform X1 [Cucumis sativus][more]
gi|778659669|ref|XP_011654826.1|7.2e-2784.93PREDICTED: sodium/hydrogen exchanger 6-like isoform X2 [Cucumis sativus][more]
gi|659128689|ref|XP_008464323.1|2.1e-26100.00PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis melo][more]
gi|657966763|ref|XP_008375081.1|7.4e-1675.44PREDICTED: sodium/hydrogen exchanger 6 isoform X2 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006635 fatty acid beta-oxidation
biological_process GO:0015074 DNA integration
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006869 lipid transport
biological_process GO:0010351 lithium ion transport
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006885 regulation of pH
biological_process GO:0035725 sodium ion transmembrane transport
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006812 cation transport
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0015385 sodium:proton antiporter activity
molecular_function GO:0015299 solute:proton antiporter activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU103745cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G177740.1Csa1G177740.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU103745CU103745transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G177740ClCG01G011310Watermelon (Charleston Gray)cuwcgB020
Csa1G177740Lsi02G011710Bottle gourd (USVL1VR-Ls)culsiB027
Csa1G177740Cla97C01G010980Watermelon (97103) v2cuwmbB008
Csa1G177740CSPI01G15480Wild cucumber (PI 183967)cpicuB000
Csa1G177740CmaCh13G003230Cucurbita maxima (Rimu)cmacuB212
Csa1G177740CmoCh13G003410Cucurbita moschata (Rifu)cmocuB199
Csa1G177740CsGy1G015210Cucumber (Gy14) v2cgybcuB001
Csa1G177740Carg24384Silver-seed gourdcarcuB0049
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G177740Wax gourdcuwgoB036
Csa1G177740Wax gourdcuwgoB047
Csa1G177740Cucumber (Chinese Long) v2cucuB042
Csa1G177740Cucumber (Gy14) v1cgycuB016
Csa1G177740Cucurbita maxima (Rimu)cmacuB210
Csa1G177740Cucurbita maxima (Rimu)cmacuB395
Csa1G177740Cucurbita maxima (Rimu)cmacuB399
Csa1G177740Cucurbita moschata (Rifu)cmocuB196
Csa1G177740Cucurbita moschata (Rifu)cmocuB382
Csa1G177740Melon (DHL92) v3.5.1cumeB000
Csa1G177740Watermelon (Charleston Gray)cuwcgB019
Csa1G177740Watermelon (Charleston Gray)cuwcgB022
Csa1G177740Watermelon (97103) v1cuwmB042
Csa1G177740Watermelon (97103) v1cuwmB048
Csa1G177740Watermelon (97103) v1cuwmB059
Csa1G177740Cucurbita pepo (Zucchini)cpecuB020
Csa1G177740Cucurbita pepo (Zucchini)cpecuB056
Csa1G177740Bottle gourd (USVL1VR-Ls)culsiB032
Csa1G177740Bottle gourd (USVL1VR-Ls)culsiB020
Csa1G177740Bottle gourd (USVL1VR-Ls)culsiB037
Csa1G177740Cucumber (Gy14) v2cgybcuB240
Csa1G177740Melon (DHL92) v3.6.1cumedB024
Csa1G177740Silver-seed gourdcarcuB0051
Csa1G177740Watermelon (97103) v2cuwmbB005
Csa1G177740Watermelon (97103) v2cuwmbB009