Csa1G177730 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G177730
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10837338 .. 10837568 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTCAATCTGTTGAAGGGTGAAATCCTGAAACACCTAGAGAAGTTCGAAAAGGTTGAAGTGGATGGTTGTGATGCAGAGTTGCTTTTAAATTTAAGTGAAATGGTTGAGAAGTTGATCATCGGTAGTGAAAACGTAGATGAATCAGCAACTATTGTTGAAGATCTTACATTTGTATGTCAGCCACTTCCATTTTGTGAGCAACAACCAACATCTCACATTGGTTAG

mRNA sequence

ATGAGGGTCAATCTGTTGAAGGGTGAAATCCTGAAACACCTAGAGAAGTTCGAAAAGGTTGAAGTGGATGGTTGTGATGCAGAGTTGCTTTTAAATTTAAGTGAAATGGTTGAGAAGTTGATCATCGGTAGTGAAAACGTAGATGAATCAGCAACTATTGTTGAAGATCTTACATTTGTATGTCAGCCACTTCCATTTTGTGAGCAACAACCAACATCTCACATTGGTTAG

Coding sequence (CDS)

ATGAGGGTCAATCTGTTGAAGGGTGAAATCCTGAAACACCTAGAGAAGTTCGAAAAGGTTGAAGTGGATGGTTGTGATGCAGAGTTGCTTTTAAATTTAAGTGAAATGGTTGAGAAGTTGATCATCGGTAGTGAAAACGTAGATGAATCAGCAACTATTGTTGAAGATCTTACATTTGTATGTCAGCCACTTCCATTTTGTGAGCAACAACCAACATCTCACATTGGTTAG

Protein sequence

MRVNLLKGEILKHLEKFEKVEVDGCDAELLLNLSEMVEKLIIGSENVDESATIVEDLTFVCQPLPFCEQQPTSHIG*
Homology
[Close]
BLAST of Csa1G177730 vs. TrEMBL
Match: A0A0A0LYJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G177730 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 5.4e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MRVNLLKGEILKHLEKFEKVEVDGCDAELLLNLSEMVEKLIIGSENVDESATIVEDLTFV 60
          MRVNLLKGEILKHLEKFEKVEVDGCDAELLLNLSEMVEKLIIGSENVDESATIVEDLTFV
Sbjct: 1  MRVNLLKGEILKHLEKFEKVEVDGCDAELLLNLSEMVEKLIIGSENVDESATIVEDLTFV 60

Query: 61 CQPLPFCEQQPTSHIG 77
          CQPLPFCEQQPTSHIG
Sbjct: 61 CQPLPFCEQQPTSHIG 76

[Close]
BLAST of Csa1G177730 vs. NCBI nr
Match: gi|700209910|gb|KGN65006.1| (hypothetical protein Csa_1G177730 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 7.8e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MRVNLLKGEILKHLEKFEKVEVDGCDAELLLNLSEMVEKLIIGSENVDESATIVEDLTFV 60
          MRVNLLKGEILKHLEKFEKVEVDGCDAELLLNLSEMVEKLIIGSENVDESATIVEDLTFV
Sbjct: 1  MRVNLLKGEILKHLEKFEKVEVDGCDAELLLNLSEMVEKLIIGSENVDESATIVEDLTFV 60

Query: 61 CQPLPFCEQQPTSHIG 77
          CQPLPFCEQQPTSHIG
Sbjct: 61 CQPLPFCEQQPTSHIG 76

The following BLAST results are available for this feature:
BLAST of Csa1G177730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYJ4_CUCSA5.4e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G177730 PE=4 SV=1[more]
BLAST of Csa1G177730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209910|gb|KGN65006.1|7.8e-35100.00hypothetical protein Csa_1G177730 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU172579cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G177730.1Csa1G177730.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU172579CU172579transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G177730Silver-seed gourdcarcuB0049
Csa1G177730Silver-seed gourdcarcuB0051
Csa1G177730Watermelon (97103) v2cuwmbB005
Csa1G177730Watermelon (97103) v2cuwmbB008
Csa1G177730Watermelon (97103) v2cuwmbB009
Csa1G177730Wax gourdcuwgoB036
Csa1G177730Wax gourdcuwgoB047
Csa1G177730Cucumber (Chinese Long) v2cucuB042
Csa1G177730Cucumber (Gy14) v1cgycuB016
Csa1G177730Cucurbita maxima (Rimu)cmacuB212
Csa1G177730Cucurbita maxima (Rimu)cmacuB210
Csa1G177730Cucurbita maxima (Rimu)cmacuB395
Csa1G177730Cucurbita maxima (Rimu)cmacuB399
Csa1G177730Cucurbita moschata (Rifu)cmocuB199
Csa1G177730Cucurbita moschata (Rifu)cmocuB196
Csa1G177730Cucurbita moschata (Rifu)cmocuB382
Csa1G177730Melon (DHL92) v3.5.1cumeB000
Csa1G177730Watermelon (Charleston Gray)cuwcgB019
Csa1G177730Watermelon (Charleston Gray)cuwcgB020
Csa1G177730Watermelon (Charleston Gray)cuwcgB022
Csa1G177730Watermelon (97103) v1cuwmB042
Csa1G177730Watermelon (97103) v1cuwmB048
Csa1G177730Watermelon (97103) v1cuwmB059
Csa1G177730Cucurbita pepo (Zucchini)cpecuB020
Csa1G177730Cucurbita pepo (Zucchini)cpecuB056
Csa1G177730Bottle gourd (USVL1VR-Ls)culsiB032
Csa1G177730Bottle gourd (USVL1VR-Ls)culsiB020
Csa1G177730Bottle gourd (USVL1VR-Ls)culsiB027
Csa1G177730Bottle gourd (USVL1VR-Ls)culsiB037
Csa1G177730Cucumber (Gy14) v2cgybcuB001
Csa1G177730Cucumber (Gy14) v2cgybcuB240
Csa1G177730Melon (DHL92) v3.6.1cumedB024