Csa1G169980 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G169980
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 10557695 .. 10558006 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCCTTACCCTCCACCTCTCTACCAACTAAACAACCCTCATCTCTCCCTCGCGAAGCCAGCAAAGACCCTCTCGCACTTCCAACTGAAGACATTTTTTACCCACCTCCACCAACTGACCCCTTCTTGCCTAAATCACCCATTTTCTCCCAATCAGCGCAGCCCTTGCTTGACTATTTCTTCCAAAATCCAACTCCCTCATCCCTCTTCTACTATGAACACCTCACTTACTCACACCGGTCTCCATCCCAATCCCATCATAGCCAACCTCACTCCCCCAAATACAAAACCCCACAAGGTTCTCCCCTAA

mRNA sequence

ATGACTCCTTACCCTCCACCTCTCTACCAACTAAACAACCCTCATCTCTCCCTCGCGAAGCCAGCAAAGACCCTCTCGCACTTCCAACTGAAGACATTTTTTACCCACCTCCACCAACTGACCCCTTCTTGCCTAAATCACCCATTTTCTCCCAATCAGCGCAGCCCTTGCTTGACTATTTCTTCCAAAATCCAACTCCCTCATCCCTCTTCTACTATGAACACCTCACTTACTCACACCGGTCTCCATCCCAATCCCATCATAGCCAACCTCACTCCCCCAAATACAAAACCCCACAAGGTTCTCCCCTAA

Coding sequence (CDS)

ATGACTCCTTACCCTCCACCTCTCTACCAACTAAACAACCCTCATCTCTCCCTCGCGAAGCCAGCAAAGACCCTCTCGCACTTCCAACTGAAGACATTTTTTACCCACCTCCACCAACTGACCCCTTCTTGCCTAAATCACCCATTTTCTCCCAATCAGCGCAGCCCTTGCTTGACTATTTCTTCCAAAATCCAACTCCCTCATCCCTCTTCTACTATGAACACCTCACTTACTCACACCGGTCTCCATCCCAATCCCATCATAGCCAACCTCACTCCCCCAAATACAAAACCCCACAAGGTTCTCCCCTAA

Protein sequence

MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTISSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP*

Homology

[Close]

BLAST of Csa1G169980 vs. TrEMBL
Match: A0A0A0LVK0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169980 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 7.5e-56
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI 60
           MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI
Sbjct: 1   MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI 60

Query: 61  SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP 104
           SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP
Sbjct: 61  SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP 103

[Close]

BLAST of Csa1G169980 vs. NCBI nr
Match: gi|700209878|gb|KGN64974.1| (hypothetical protein Csa_1G169980 [Cucumis sativus])

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


Query: 1   MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI 60
           MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI
Sbjct: 1   MTPYPPPLYQLNNPHLSLAKPAKTLSHFQLKTFFTHLHQLTPSCLNHPFSPNQRSPCLTI 60

Query: 61  SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP 104
           SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP
Sbjct: 61  SSKIQLPHPSSTMNTSLTHTGLHPNPIIANLTPPNTKPHKVLP 103

The following BLAST results are available for this feature:

BLAST of Csa1G169980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVK0_CUCSA	7.5e-56	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169980 PE=4 SV=1	[more]

BLAST of Csa1G169980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209878\|gb\|KGN64974.1\|	1.1e-55	100.00	hypothetical protein Csa_1G169980 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G169980.1	Csa1G169980.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G169980	Cucurbita moschata (Rifu)	cmocuB206
Csa1G169980	Cucurbita moschata (Rifu)	cmocuB392
Csa1G169980	Melon (DHL92) v3.5.1	cumeB015
Csa1G169980	Watermelon (Charleston Gray)	cuwcgB022
Csa1G169980	Watermelon (97103) v1	cuwmB042
Csa1G169980	Cucurbita pepo (Zucchini)	cpecuB020
Csa1G169980	Bottle gourd (USVL1VR-Ls)	culsiB032
Csa1G169980	Cucumber (Gy14) v2	cgybcuB001
Csa1G169980	Melon (DHL92) v3.6.1	cumedB010
Csa1G169980	Watermelon (97103) v2	cuwmbB009
Csa1G169980	Cucumber (Gy14) v1	cgycuB457
Csa1G169980	Cucurbita maxima (Rimu)	cmacuB222
Csa1G169980	Cucurbita maxima (Rimu)	cmacuB399