Csa1G159090 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G159090
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	THO complex subunit
Location	Chr1 : 10041020 .. 10041443 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTGATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTGTGTGCGTTTTCTCATAATTGAATTACGTACTTTTGATATTTGTCTATTCTTTATTTATAAGATTTAAACTCTCAATATATTATGCATTAAAGTTCTTTTGTAGGCAATAGTTCTGATCTGGAATGACTCGTTTTTGTAGGTTTCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

mRNA sequence

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTGATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTTTCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

Coding sequence (CDS)

ATGGTTAGCAAGCAGTTTGATAGATGGCATGGAACTCTGCTTCAATATGTGGAATTTCTTAGTACTGCAGTTGTCCATCTTTATCTCCTTGATCTCGAGGACTATGCGCATGTGTCACTGTCATACGACTTCTGTTTTCTTGGGATTGTTTCTTTCATAATTTATCGGCCAATGATGAGGCTATTTAAGTGTCAAGGTGGTTCTAATATCTTCTGGCCACTGAATGGAAATGATGCAAATTTTGTAGGCAATCGTTTTGATCTGGATCTTGGTTCTTTGTAG

Protein sequence

MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL*

Homology

[Close]

BLAST of Csa1G159090 vs. Swiss-Prot
Match: THOC2_ARATH (THO complex subunit 2 OS=Arabidopsis thaliana GN=THO2 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.7e-10
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----VHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYR 60
           MV++QFDR HG LLQYV+FLS+AV     +  L+   D     L + +     V+F+++R
Sbjct: 790 MVTEQFDRCHGILLQYVDFLSSAVSPTTAYARLVPSLD----ELVHTYHLEAEVAFLVFR 849

Query: 61  PMMRLFKCQGGSNIFWPLNGNDA 80
           P+MRLFKC+   ++ WPL+  ++
Sbjct: 850 PVMRLFKCRRNGDVSWPLDSGES 868

[Close]

BLAST of Csa1G159090 vs. TrEMBL
Match: A0A0A0LY71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G159090 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 6.8e-48
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60
          MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR
Sbjct: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60

Query: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 94
          LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL
Sbjct: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 93

[Close]

BLAST of Csa1G159090 vs. TrEMBL
Match: A0A0A0KPA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G550190 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.0e-19
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVV----------------HLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL+TAV                 HLY LD E           
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPASAYAQLIPSLNELAHLYHLDPE----------- 857

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
                V+F+IYRP+MRL+KCQGGS+IFWPL+GNDAN +GN  DL+
Sbjct: 858 -----VAFLIYRPIMRLYKCQGGSDIFWPLDGNDANVIGNSSDLE 886

[Close]

BLAST of Csa1G159090 vs. TrEMBL
Match: B9SNG7_RICCO (Tho2 protein, putative OS=Ricinus communis GN=RCOM_1148800 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-13
Identity = 48/95 (50.53%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL +AV                VHLY LD E           
Sbjct: 795 MVSEQFDRCHGTLLQYVEFLCSAVTPATGYAKLIPSLDDLVHLYHLDPE----------- 854

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDA 80
                V+F+IYRP+MRLFKC G S++FWPL+ NDA
Sbjct: 855 -----VAFLIYRPVMRLFKCVGNSDVFWPLDDNDA 873

[Close]

BLAST of Csa1G159090 vs. TrEMBL
Match: A0A061E8P0_THECC (THO complex subunit 2 isoform 2 OS=Theobroma cacao GN=TCM_011260 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHL-----YLLDLEDYAHVSLSYDFCFLGIVSFIIY 60
           MVS+QFDR HGTLLQYVEFL +AV         +  L+D  HV     +     V+F+IY
Sbjct: 796 MVSEQFDRCHGTLLQYVEFLCSAVTPAAAYAQLIPSLDDLVHV-----YHLDPEVAFLIY 855

Query: 61  RPMMRLFKCQGGSNIFWPLNGND 79
           RP+MRLFKCQG S++FWPL+ N+
Sbjct: 856 RPVMRLFKCQGSSDVFWPLDDNE 873

[Close]

BLAST of Csa1G159090 vs. TrEMBL
Match: A0A061E9L6_THECC (THO complex subunit 2 isoform 4 OS=Theobroma cacao GN=TCM_011260 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.4e-13
Identity = 44/83 (53.01%), Postives = 56/83 (67.47%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVVHL-----YLLDLEDYAHVSLSYDFCFLGIVSFIIY 60
           MVS+QFDR HGTLLQYVEFL +AV         +  L+D  HV     +     V+F+IY
Sbjct: 796 MVSEQFDRCHGTLLQYVEFLCSAVTPAAAYAQLIPSLDDLVHV-----YHLDPEVAFLIY 855

Query: 61  RPMMRLFKCQGGSNIFWPLNGND 79
           RP+MRLFKCQG S++FWPL+ N+
Sbjct: 856 RPVMRLFKCQGSSDVFWPLDDNE 873

[Close]

BLAST of Csa1G159090 vs. TAIR10
Match: AT1G24706.2 (AT1G24706.2 THO2)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-11
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----VHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYR 60
           MV++QFDR HG LLQYV+FLS+AV     +  L+   D     L + +     V+F+++R
Sbjct: 790 MVTEQFDRCHGILLQYVDFLSSAVSPTTAYARLVPSLD----ELVHTYHLEAEVAFLVFR 849

Query: 61  PMMRLFKCQGGSNIFWPLNGNDA 80
           P+MRLFKC+   ++ WPL+  ++
Sbjct: 850 PVMRLFKCRRNGDVSWPLDSGES 868

[Close]

BLAST of Csa1G159090 vs. NCBI nr
Match: gi|700209820|gb|KGN64916.1| (hypothetical protein Csa_1G159090 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 9.8e-48
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 1


Query: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60
          MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR
Sbjct: 1  MVSKQFDRWHGTLLQYVEFLSTAVVHLYLLDLEDYAHVSLSYDFCFLGIVSFIIYRPMMR 60

Query: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 94
          LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL
Sbjct: 61 LFKCQGGSNIFWPLNGNDANFVGNRFDLDLGSL 93

[Close]

BLAST of Csa1G159090 vs. NCBI nr
Match: gi|659072782|ref|XP_008467094.1| (PREDICTED: THO complex subunit 2 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 1.5e-19
Identity = 58/105 (55.24%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVV----------------HLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL+TAV                 HLY LD E           
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPASAYAQLIPSLNELAHLYHLDPE----------- 857

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
                V+F+IYRP+MRLFKCQGGS+IFWPL+GNDAN VGN  DL+
Sbjct: 858 -----VAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVVGNSSDLE 886

[Close]

BLAST of Csa1G159090 vs. NCBI nr
Match: gi|449450219|ref|XP_004142861.1| (PREDICTED: THO complex subunit 2 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 4.3e-19
Identity = 56/105 (53.33%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAVV----------------HLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL+TAV                 HLY LD E           
Sbjct: 798 MVSEQFDRCHGTLLQYVEFLTTAVTPASAYAQLIPSLNELAHLYHLDPE----------- 857

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFVGNRFDLD 90
                V+F+IYRP+MRL+KCQGGS+IFWPL+GNDAN +GN  DL+
Sbjct: 858 -----VAFLIYRPIMRLYKCQGGSDIFWPLDGNDANVIGNSSDLE 886

[Close]

BLAST of Csa1G159090 vs. NCBI nr
Match: gi|1009166085|ref|XP_015901397.1| (PREDICTED: LOW QUALITY PROTEIN: THO complex subunit 2 [Ziziphus jujuba])

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-15
Identity = 49/98 (50.00%), Postives = 60/98 (61.22%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFLS+A+                VHLY LD E           
Sbjct: 631 MVSEQFDRCHGTLLQYVEFLSSAMTPASAYAQLIPSLDDLVHLYHLDPE----------- 690

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDANFV 83
                V+F+IYRP+MRLFKCQG S +FWPL+GN+A+ +
Sbjct: 691 -----VAFLIYRPVMRLFKCQGSSEVFWPLDGNEASSI 712

[Close]

BLAST of Csa1G159090 vs. NCBI nr
Match: gi|223533086|gb|EEF34845.1| (tho2 protein, putative [Ricinus communis])

HSP 1 Score: 83.6 bits (205), Expect = 2.1e-13
Identity = 48/95 (50.53%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 1   MVSKQFDRWHGTLLQYVEFLSTAV----------------VHLYLLDLEDYAHVSLSYDF 60
           MVS+QFDR HGTLLQYVEFL +AV                VHLY LD E           
Sbjct: 795 MVSEQFDRCHGTLLQYVEFLCSAVTPATGYAKLIPSLDDLVHLYHLDPE----------- 854

Query: 61  CFLGIVSFIIYRPMMRLFKCQGGSNIFWPLNGNDA 80
                V+F+IYRP+MRLFKC G S++FWPL+ NDA
Sbjct: 855 -----VAFLIYRPVMRLFKCVGNSDVFWPLDDNDA 873

The following BLAST results are available for this feature:

BLAST of Csa1G159090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THOC2_ARATH	4.7e-10	40.96	THO complex subunit 2 OS=Arabidopsis thaliana GN=THO2 PE=1 SV=1	[more]

BLAST of Csa1G159090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY71_CUCSA	6.8e-48	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G159090 PE=4 SV=1	[more]
A0A0A0KPA6_CUCSA	3.0e-19	53.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G550190 PE=4 SV=1	[more]
B9SNG7_RICCO	1.4e-13	50.53	Tho2 protein, putative OS=Ricinus communis GN=RCOM_1148800 PE=4 SV=1	[more]
A0A061E8P0_THECC	2.4e-13	53.01	THO complex subunit 2 isoform 2 OS=Theobroma cacao GN=TCM_011260 PE=4 SV=1	[more]
A0A061E9L6_THECC	2.4e-13	53.01	THO complex subunit 2 isoform 4 OS=Theobroma cacao GN=TCM_011260 PE=4 SV=1	[more]

BLAST of Csa1G159090 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G24706.2	2.7e-11	40.96	THO2	[more]

BLAST of Csa1G159090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209820\|gb\|KGN64916.1\|	9.8e-48	100.00	hypothetical protein Csa_1G159090 [Cucumis sativus]	[more]
gi\|659072782\|ref\|XP_008467094.1\|	1.5e-19	55.24	PREDICTED: THO complex subunit 2 [Cucumis melo]	[more]
gi\|449450219\|ref\|XP_004142861.1\|	4.3e-19	53.33	PREDICTED: THO complex subunit 2 [Cucumis sativus]	[more]
gi\|1009166085\|ref\|XP_015901397.1\|	6.4e-15	50.00	PREDICTED: LOW QUALITY PROTEIN: THO complex subunit 2 [Ziziphus jujuba]	[more]
gi\|223533086\|gb\|EEF34845.1\|	2.1e-13	50.53	tho2 protein, putative [Ricinus communis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G159090.1	Csa1G159090.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G159090	CsGy1G014470	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G159090	Cucurbita moschata (Rifu)	cmocuB188
Csa1G159090	Cucurbita moschata (Rifu)	cmocuB569
Csa1G159090	Melon (DHL92) v3.5.1	cumeB015
Csa1G159090	Watermelon (Charleston Gray)	cuwcgB024
Csa1G159090	Watermelon (Charleston Gray)	cuwcgB028
Csa1G159090	Watermelon (97103) v1	cuwmB042
Csa1G159090	Watermelon (97103) v1	cuwmB065
Csa1G159090	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G159090	Cucurbita pepo (Zucchini)	cpecuB848
Csa1G159090	Bottle gourd (USVL1VR-Ls)	culsiB005
Csa1G159090	Bottle gourd (USVL1VR-Ls)	culsiB021
Csa1G159090	Bottle gourd (USVL1VR-Ls)	culsiB044
Csa1G159090	Melon (DHL92) v3.6.1	cumedB010
Csa1G159090	Melon (DHL92) v3.6.1	cumedB078
Csa1G159090	Silver-seed gourd	carcuB0931
Csa1G159090	Watermelon (97103) v2	cuwmbB009
Csa1G159090	Watermelon (97103) v2	cuwmbB026
Csa1G159090	Wax gourd	cuwgoB049
Csa1G159090	Cucumber (Gy14) v1	cgycuB305
Csa1G159090	Cucurbita maxima (Rimu)	cmacuB203
Csa1G159090	Cucurbita maxima (Rimu)	cmacuB579