Csa1G144310 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G144310
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9646249 .. 9646558 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAATCATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

mRNA sequence

ATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

Coding sequence (CDS)

ATGAATTTGGAAATTGATGAAGAGGAAAGGGTAGCTGTACGTTTGATGAAGAGGAAGCTTGAGAAAACTATAGCCATAACTTTAGAAGAGAGGCAAAGAAGAAAGCCGGAGAAGAAACGAAGAACAAAGAGAGAAAAGGTAATCGGAGAGGAACTAAACAAAGAGAAACGGAAGAGGAACGAACGAAGAGAAAAAGAGAGTCGGAGAAGAAAGCCCAAGAACAAAGAGGAGAAACAAAGGGAAGAGAACAAGAATGGAACGAGGAGAAACTCTTTTTTGTTGTTCCCACAAATTTCTTATTAA

Protein sequence

MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRNERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY*
Homology
[Close]
BLAST of Csa1G144310 vs. Swiss-Prot
Match: DOT1L_DICDI (Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Dictyostelium discoideum GN=dotA PE=2 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 9.9e-06
Identity = 25/78 (32.05%), Postives = 43/78 (55.13%), Query Frame = 1 

Query: 7   EEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRNERREKE 66
           E E    R  +RK E+ I I  E ++R + E+++  K+EK    E  + +RK  ER+E+E
Sbjct: 492 ENENEKEREKERKREREIEIERERKERERKEREKERKKEKEREREREERERKEIERKERE 551

Query: 67  SRRRKPKNKEEKQREENK 85
              R+ + ++E +R+E +
Sbjct: 552 REEREERERKEIERKETE 569


HSP 2 Score: 40.4 bits (93), Expect = 1.3e-02
Identity = 29/91 (31.87%), Postives = 47/91 (51.65%), Query Frame = 1 

Query: 3   LEIDEEERVAVRLMK---RKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKR 62
           +EI+ E +   R  +   RK EK      EER+R++ E+K R + E+        E+R+R
Sbjct: 509 IEIERERKERERKEREKERKKEKEREREREERERKEIERKEREREER--------EERER 568

Query: 63  NERREKESRRRKPKNKEEKQRE-ENKNGTRR 90
            E   KE+ R++ + KE +++E E K   R+
Sbjct: 569 KEIERKETERKEIERKEIERKEIERKERERK 591


HSP 3 Score: 32.7 bits (73), Expect = 2.8e+00
Identity = 19/59 (32.20%), Postives = 31/59 (52.54%), Query Frame = 1 

Query: 34  RKPEKKRRTKREKVIGEELNKEKRKRNER-REKE---SRRRKPKNKEEKQREENKNGTR 89
           ++ EK R   ++K+   E   EK +  ER RE+E    R RK + ++E+++E  K   R
Sbjct: 475 KEKEKLREALKQKLKEYENENEKEREKERKREREIEIERERKERERKEREKERKKEKER 533

[Close]
BLAST of Csa1G144310 vs. TrEMBL
Match: A0A0A0LSW1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144310 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 9.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN 60
           MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN
Sbjct: 1   MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN 60

Query: 61  ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY 101
           ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY
Sbjct: 61  ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY 100

[Close]
BLAST of Csa1G144310 vs. NCBI nr
Match: gi|700209782|gb|KGN64878.1| (hypothetical protein Csa_1G144310 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 

Query: 1   MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN 60
           MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN
Sbjct: 1   MNLEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRN 60

Query: 61  ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY 101
           ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY
Sbjct: 61  ERREKESRRRKPKNKEEKQREENKNGTRRNSFLLFPQISY 100

[Close]
BLAST of Csa1G144310 vs. NCBI nr
Match: gi|449280518|gb|EMC87806.1| (Protein PRQFV-amide [Columba livia])

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-06
Identity = 37/91 (40.66%), Postives = 55/91 (60.44%), Query Frame = 1 

Query: 4   EIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKR--EKVIGEELNKEKR---K 63
           E +EE+R   R  + + EK      EE+++RK EK+R  KR  EK   E+  +EKR   K
Sbjct: 296 EKEEEKRKRKRRERGREEKE-----EEKRKRKEEKRREEKRREEKRREEKRREEKRREEK 355

Query: 64  RNERREKESRRRKPKNKEEKQREENKNGTRR 90
           R+E +  E +RR+ K +EEK+REE + G +R
Sbjct: 356 RSEAKRSEEKRREEKRREEKRREEKRRGRKR 381

[Close]
BLAST of Csa1G144310 vs. NCBI nr
Match: gi|449280518|gb|EMC87806.1| (Protein PRQFV-amide [Columba livia])

HSP 1 Score: 45.4 bits (106), Expect = 6.7e-02
Identity = 29/85 (34.12%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 4  EIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRNERR 63
          E++++ER   R  +RK E+      EERQ++K  KKRR +++   G E    K ++ + R
Sbjct: 6  EMEKKERRRKRRKERKKERKKEGG-EERQQKKRRKKRRKEKKTKKGRE---GKGRKGKER 65

Query: 64 EKESRRRKPKNKEEKQREENKNGTR 89
            E RR + + +EEK+ E+ K   R
Sbjct: 66 RGEERRGRERGREEKEEEKRKRKRR 86


HSP 2 Score: 44.3 bits (103), Expect = 1.5e-01
Identity = 29/98 (29.59%), Postives = 51/98 (52.04%), Query Frame = 1 

Query: 4   EIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKV------------IGEE 63
           E++++ER   R  +RK E+      E +Q+++ +K+R+ K+ K              GEE
Sbjct: 6   EMEKKERRRKRRKERKKERKKEGGEERQQKKRRKKRRKEKKTKKGREGKGRKGKERRGEE 65

Query: 64  LNKEKRKRNER-REKESRRRKPKNKEEKQREENKNGTR 89
               +R R E+  EK  R+R+ + +EEK+ E+ K   R
Sbjct: 66  RRGRERGREEKEEEKRKRKRRERGREEKEEEKRKRKRR 103


HSP 3 Score: 58.2 bits (139), Expect = 9.9e-06
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 3   LEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRNER 62
           + ID+ E +  R +K  L  TI    EE++R K  K+ + K EK   E+  +EKR++ +R
Sbjct: 395 IHIDQLENIQRRFLKF-LRNTIEKRREEKRREKKRKEEKKKEEKRREEKRREEKRRKEKR 454

Query: 63  REKESRRRKPKNKEEKQREENKNGTRR 90
           RE+  +RR+ K+KEEK REE +   +R
Sbjct: 455 REE--KRREEKSKEEKGREEKRKEEKR 478

[Close]
BLAST of Csa1G144310 vs. NCBI nr
Match: gi|1004401247|gb|KYB28256.1| (hypothetical protein TcasGA2_TC031070 [Tribolium castaneum])

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-03
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 17  KRKLEKTIAITLEERQRRKPEKKRRTKREKVIG-EELNKEKRKRNERREK----ESRRRK 76
           KR+ EK         ++RK EK+R  KR +  G EE  +E+++R E+R K    E +RRK
Sbjct: 603 KRREEK------RREEKRKEEKRREEKRREEKGREEKRREEKRRKEKRRKKKRREEQRRK 662

Query: 77  PKNKEEKQREENKNGTRR 90
            K +EEK+REE +   ++
Sbjct: 663 GKRREEKRREEKRKEEKK 674


HSP 2 Score: 58.2 bits (139), Expect = 9.9e-06
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1 

Query: 3   LEIDEEERVAVRLMKRKLEKTIAITLEERQRRKPEKKRRTKREKVIGEELNKEKRKRNER 62
           + ID+ E +  R +K  L  TI    EE++R K  K+ + K EK   E+  +EKR++ +R
Sbjct: 386 IHIDQLENIQRRFLKF-LRNTIEKRREEKRREKKRKEEKKKEEKRREEKRREEKRRKEKR 445

Query: 63  REKESRRRKPKNKEEKQREENKNGTRR 90
           RE+  +RR+ K+KEEK REE +   +R
Sbjct: 446 REE--KRREEKSKEEKGREEKRKEEKR 469

[Close]
BLAST of Csa1G144310 vs. NCBI nr
Match: gi|1004401248|gb|KYB28257.1| (hypothetical protein TcasGA2_TC031070 [Tribolium castaneum])

HSP 1 Score: 50.1 bits (118), Expect = 2.7e-03
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 17  KRKLEKTIAITLEERQRRKPEKKRRTKREKVIG-EELNKEKRKRNERREK----ESRRRK 76
           KR+ EK         ++RK EK+R  KR +  G EE  +E+++R E+R K    E +RRK
Sbjct: 594 KRREEK------RREEKRKEEKRREEKRREEKGREEKRREEKRRKEKRRKKKRREEQRRK 653

Query: 77  PKNKEEKQREENKNGTRR 90
            K +EEK+REE +   ++
Sbjct: 654 GKRREEKRREEKRKEEKK 665

The following BLAST results are available for this feature:
BLAST of Csa1G144310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DOT1L_DICDI9.9e-0632.05Histone-lysine N-methyltransferase, H3 lysine-79 specific OS=Dictyostelium disco... [more]
BLAST of Csa1G144310 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSW1_CUCSA9.6e-48100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G144310 PE=4 SV=1[more]
BLAST of Csa1G144310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209782|gb|KGN64878.1|1.4e-47100.00hypothetical protein Csa_1G144310 [Cucumis sativus][more]
gi|449280518|gb|EMC87806.1|9.9e-0640.66Protein PRQFV-amide [Columba livia][more]
gi|449280518|gb|EMC87806.1|6.7e-0234.12Protein PRQFV-amide [Columba livia][more]
gi|1004401247|gb|KYB28256.1|2.7e-0338.46hypothetical protein TcasGA2_TC031070 [Tribolium castaneum][more]
gi|1004401248|gb|KYB28257.1|2.7e-0338.46hypothetical protein TcasGA2_TC031070 [Tribolium castaneum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G144310.1Csa1G144310.1mRNA