Csa1G132690 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G132690
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Pheophorbide a oxygenase
Location	Chr1 : 9453276 .. 9454037 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAATTATTGCTTTCCTACTCTGTCTCAAGGCCTCCTCTTTGTTTGGCCAGATGAGAATGGTTGGGAAAGAGCCGACGCCACCACACCTCCAAGGTAGTTGATTCAGAATTAATCGTAAAATAGCTTCACCTTTCCATGTATTATTAAGAAACAAAGAGGAAAGGAGCGTAGAACCTGATGACTTTGATAAGCCTGAGTTCTCATCAGTTACGATTCAGCGGGATTTATTTTATGGTTATGATACACTAATGGAGAATGTATCAGATCCTTCCCACATAAATTTTGCTCATCACTAGGCAGGGGAGGGCCAACGTGAAAGAACCTTTTCAACTAAACTTGAAATTTGCACCAGTGGTTTAGTTATTGATTGAATCATTATGGTCGTTTGTGTTTTTCTTTTCTTTCTGTTTCTGATGAATGCTAAATGAAAGAAATGTGTCATATATAAATAACTAAAAAACTTCAATGTTACCTGCTGGGTGCTGTTAAATATTTACTATGATTTAGAAGAGATTATGTTTCAGGAAGGAACATCACAATGTCTTGCTTCTGAAAGGAACATTTTCACAGGTTACAGGGAGGCAGGACCAAGCAAAACCTTTACCTTTCAAGGTGGATTCTAATGGTTCCTGGGGATTTTCTGGAGCAAATAAGGGTAACCCAAGGATTAGTGCCAAGTTTATTTCTCCTTGTTACTATATCAACAAGTAAAGATTTCACTCTTTTTCTCCTGTATTCACATTTGAACAATGCATAG

mRNA sequence

ATGAAAAATTATTGCTTTCCTACTCTGTCTCAAGGCCTCCTCTTTGTTTGGCCAGATGAGAATGGTTGGGAAAGAGCCGACGCCACCACACCTCCAAGAAACAAAGAGGAAAGGAGCGTAGAACCTGATGACTTTGATAAGCCTGAGTTCTCATCAGTTACGATTCAGCGGGATTTATTTTATGGTTATGATACACTAATGGAGAATGGCCAACGTGAAAGAACCTTTTCAACTAAACTTGAAATTTGCACCAGTGGTTTAGAACATTTTCACAGGTTACAGGGAGGCAGGACCAAGCAAAACCTTTACCTTTCAAGGTGGATTCTAATGGTTCCTGGGGATTTTCTGGAGCAAATAAGGGTAACCCAAGGATTAGTGCCAAGTTTATTTCTCCTTGTTACTATATCAACAAGTAAAGATTTCACTCTTTTTCTCCTGTATTCACATTTGAACAATGCATAG

Coding sequence (CDS)

ATGAAAAATTATTGCTTTCCTACTCTGTCTCAAGGCCTCCTCTTTGTTTGGCCAGATGAGAATGGTTGGGAAAGAGCCGACGCCACCACACCTCCAAGAAACAAAGAGGAAAGGAGCGTAGAACCTGATGACTTTGATAAGCCTGAGTTCTCATCAGTTACGATTCAGCGGGATTTATTTTATGGTTATGATACACTAATGGAGAATGGCCAACGTGAAAGAACCTTTTCAACTAAACTTGAAATTTGCACCAGTGGTTTAGAACATTTTCACAGGTTACAGGGAGGCAGGACCAAGCAAAACCTTTACCTTTCAAGGTGGATTCTAATGGTTCCTGGGGATTTTCTGGAGCAAATAAGGGTAACCCAAGGATTAGTGCCAAGTTTATTTCTCCTTGTTACTATATCAACAAGTAAAGATTTCACTCTTTTTCTCCTGTATTCACATTTGAACAATGCATAG

Protein sequence

MKNYCFPTLSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYDTLMENGQRERTFSTKLEICTSGLEHFHRLQGGRTKQNLYLSRWILMVPGDFLEQIRVTQGLVPSLFLLVTISTSKDFTLFLLYSHLNNA*

Homology

[Close]

BLAST of Csa1G132690 vs. Swiss-Prot
Match: PAO_ARATH (Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-21
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPT+ SQGLLFVWPDENGW+RA++  PPR        PDDFDKPEFS+VTIQRDLFYGYD
Sbjct: 189 FPTMVSQGLLFVWPDENGWDRANSIEPPRL-------PDDFDKPEFSTVTIQRDLFYGYD 246

Query: 66  TLMEN 70
           TLMEN
Sbjct: 249 TLMEN 246

[Close]

BLAST of Csa1G132690 vs. TrEMBL
Match: A0A0A0LV61_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132690 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 3.3e-84
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MKNYCFPTLSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLF 60
           MKNYCFPTLSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLF
Sbjct: 1   MKNYCFPTLSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLF 60

Query: 61  YGYDTLMENGQRERTFSTKLEICTSGLEHFHRLQGGRTKQNLYLSRWILMVPGDFLEQIR 120
           YGYDTLMENGQRERTFSTKLEICTSGLEHFHRLQGGRTKQNLYLSRWILMVPGDFLEQIR
Sbjct: 61  YGYDTLMENGQRERTFSTKLEICTSGLEHFHRLQGGRTKQNLYLSRWILMVPGDFLEQIR 120

Query: 121 VTQGLVPSLFLLVTISTSKDFTLFLLYSHLNNA 154
           VTQGLVPSLFLLVTISTSKDFTLFLLYSHLNNA
Sbjct: 121 VTQGLVPSLFLLVTISTSKDFTLFLLYSHLNNA 153

[Close]

BLAST of Csa1G132690 vs. TrEMBL
Match: A0A0A0LSG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132160 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.8e-29
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPTL SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD
Sbjct: 201 FPTLVSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 260

Query: 66  TLMEN 70
           TLMEN
Sbjct: 261 TLMEN 265

[Close]

BLAST of Csa1G132690 vs. TrEMBL
Match: W9SSQ3_9ROSA (Pheophorbide a oxygenase OS=Morus notabilis GN=L484_011773 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.4e-20
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPTL SQGLLFVWPDENGWERA AT PP       + PDDFDKPEFSSVTIQRDLFYGYD
Sbjct: 191 FPTLVSQGLLFVWPDENGWERASATKPP-------MLPDDFDKPEFSSVTIQRDLFYGYD 248

Query: 66  TLMEN 70
           TLMEN
Sbjct: 251 TLMEN 248

[Close]

BLAST of Csa1G132690 vs. TrEMBL
Match: A0A059DB79_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03924 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-19
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPT+ SQGLLFVWPDENGWERA+AT PP       + P+DFDKPEFS+VTIQRDLFYGYD
Sbjct: 208 FPTMISQGLLFVWPDENGWERANATKPP-------MLPEDFDKPEFSTVTIQRDLFYGYD 265

Query: 66  TLMEN 70
           TLMEN
Sbjct: 268 TLMEN 265

[Close]

BLAST of Csa1G132690 vs. TrEMBL
Match: A0A067LI95_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05421 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-19
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPT+ SQGLLFVWPDENGWERA AT PP       + PDDFD+PEFS+VTIQRDLFYGYD
Sbjct: 195 FPTMVSQGLLFVWPDENGWERAQATKPP-------MLPDDFDRPEFSTVTIQRDLFYGYD 252

Query: 66  TLMEN 70
           TLMEN
Sbjct: 255 TLMEN 252

[Close]

BLAST of Csa1G132690 vs. TAIR10
Match: AT3G44880.1 (AT3G44880.1 Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain)

HSP 1 Score: 101.3 bits (251), Expect = 5.5e-22
Identity = 49/65 (75.38%), Postives = 52/65 (80.00%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPT+ SQGLLFVWPDENGW+RA++  PPR        PDDFDKPEFS+VTIQRDLFYGYD
Sbjct: 189 FPTMVSQGLLFVWPDENGWDRANSIEPPRL-------PDDFDKPEFSTVTIQRDLFYGYD 246

Query: 66  TLMEN 70
           TLMEN
Sbjct: 249 TLMEN 246

[Close]

BLAST of Csa1G132690 vs. NCBI nr
Match: gi|700209763|gb|KGN64859.1| (hypothetical protein Csa_1G132690 [Cucumis sativus])

HSP 1 Score: 318.9 bits (816), Expect = 4.8e-84
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


Query: 1   MKNYCFPTLSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLF 60
           MKNYCFPTLSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLF
Sbjct: 1   MKNYCFPTLSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLF 60

Query: 61  YGYDTLMENGQRERTFSTKLEICTSGLEHFHRLQGGRTKQNLYLSRWILMVPGDFLEQIR 120
           YGYDTLMENGQRERTFSTKLEICTSGLEHFHRLQGGRTKQNLYLSRWILMVPGDFLEQIR
Sbjct: 61  YGYDTLMENGQRERTFSTKLEICTSGLEHFHRLQGGRTKQNLYLSRWILMVPGDFLEQIR 120

Query: 121 VTQGLVPSLFLLVTISTSKDFTLFLLYSHLNNA 154
           VTQGLVPSLFLLVTISTSKDFTLFLLYSHLNNA
Sbjct: 121 VTQGLVPSLFLLVTISTSKDFTLFLLYSHLNNA 153

[Close]

BLAST of Csa1G132690 vs. NCBI nr
Match: gi|700209759|gb|KGN64855.1| (hypothetical protein Csa_1G132160 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 9.8e-29
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPTL SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD
Sbjct: 201 FPTLVSQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 260

Query: 66  TLMEN 70
           TLMEN
Sbjct: 261 TLMEN 265

[Close]

BLAST of Csa1G132690 vs. NCBI nr
Match: gi|778659272|ref|XP_011654100.1| (PREDICTED: LOW QUALITY PROTEIN: pheophorbide a oxygenase, chloroplastic [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 3.6e-23
Identity = 58/65 (89.23%), Postives = 58/65 (89.23%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPTL SQGLLFVWPDENGWERADATTPP      SVEPDDFDKPEFSSVTIQRDLFYGYD
Sbjct: 201 FPTLVSQGLLFVWPDENGWERADATTPP------SVEPDDFDKPEFSSVTIQRDLFYGYD 259

Query: 66  TLMEN 70
           TLMEN
Sbjct: 261 TLMEN 259

[Close]

BLAST of Csa1G132690 vs. NCBI nr
Match: gi|659071896|ref|XP_008462467.1| (PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-21
Identity = 55/65 (84.62%), Postives = 56/65 (86.15%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPTL SQGLLFVWPDENGWERA+ATTPPR        PDDFDKPEFSSVTIQRDLFYGYD
Sbjct: 201 FPTLVSQGLLFVWPDENGWERANATTPPRL-------PDDFDKPEFSSVTIQRDLFYGYD 258

Query: 66  TLMEN 70
           TLMEN
Sbjct: 261 TLMEN 258

[Close]

BLAST of Csa1G132690 vs. NCBI nr
Match: gi|703150710|ref|XP_010109931.1| (Pheophorbide a oxygenase [Morus notabilis])

HSP 1 Score: 105.9 bits (263), Expect = 6.3e-20
Identity = 53/65 (81.54%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 6   FPTL-SQGLLFVWPDENGWERADATTPPRNKEERSVEPDDFDKPEFSSVTIQRDLFYGYD 65
           FPTL SQGLLFVWPDENGWERA AT PP       + PDDFDKPEFSSVTIQRDLFYGYD
Sbjct: 191 FPTLVSQGLLFVWPDENGWERASATKPP-------MLPDDFDKPEFSSVTIQRDLFYGYD 248

Query: 66  TLMEN 70
           TLMEN
Sbjct: 251 TLMEN 248

The following BLAST results are available for this feature:

BLAST of Csa1G132690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PAO_ARATH	9.8e-21	75.38	Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis thaliana GN=PAO PE=1 SV=1	[more]

BLAST of Csa1G132690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV61_CUCSA	3.3e-84	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132690 PE=4 SV=1	[more]
A0A0A0LSG3_CUCSA	6.8e-29	98.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G132160 PE=4 SV=1	[more]
W9SSQ3_9ROSA	4.4e-20	81.54	Pheophorbide a oxygenase OS=Morus notabilis GN=L484_011773 PE=4 SV=1	[more]
A0A059DB79_EUCGR	3.7e-19	76.92	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03924 PE=4 SV=1	[more]
A0A067LI95_JATCU	3.7e-19	76.92	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05421 PE=4 SV=1	[more]

BLAST of Csa1G132690 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44880.1	5.5e-22	75.38	Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain	[more]

BLAST of Csa1G132690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209763\|gb\|KGN64859.1\|	4.8e-84	100.00	hypothetical protein Csa_1G132690 [Cucumis sativus]	[more]
gi\|700209759\|gb\|KGN64855.1\|	9.8e-29	98.46	hypothetical protein Csa_1G132160 [Cucumis sativus]	[more]
gi\|778659272\|ref\|XP_011654100.1\|	3.6e-23	89.23	PREDICTED: LOW QUALITY PROTEIN: pheophorbide a oxygenase, chloroplastic [Cucumis...	[more]
gi\|659071896\|ref\|XP_008462467.1\|	3.4e-21	84.62	PREDICTED: pheophorbide a oxygenase, chloroplastic [Cucumis melo]	[more]
gi\|703150710\|ref\|XP_010109931.1\|	6.3e-20	81.54	Pheophorbide a oxygenase [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0010277	chlorophyllide a oxygenase [overall] activity
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G132690.1	Csa1G132690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21266	IRON-SULFUR DOMAIN CONTAINING PROTEIN	coord: 6..69 score: 2.2
None	No IPR available	PANTHER	PTHR21266:SF24	PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC	coord: 6..69 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G132690	Watermelon (97103) v2	cuwmbB002
Csa1G132690	Wax gourd	cuwgoB049
Csa1G132690	Cucumber (Gy14) v1	cgycuB305
Csa1G132690	Cucurbita maxima (Rimu)	cmacuB163
Csa1G132690	Cucurbita maxima (Rimu)	cmacuB203
Csa1G132690	Cucurbita moschata (Rifu)	cmocuB148
Csa1G132690	Cucurbita moschata (Rifu)	cmocuB188
Csa1G132690	Melon (DHL92) v3.5.1	cumeB015
Csa1G132690	Watermelon (Charleston Gray)	cuwcgB014
Csa1G132690	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G132690	Cucurbita pepo (Zucchini)	cpecuB805
Csa1G132690	Bottle gourd (USVL1VR-Ls)	culsiB044
Csa1G132690	Cucumber (Gy14) v2	cgybcuB001
Csa1G132690	Melon (DHL92) v3.6.1	cumedB010
Csa1G132690	Silver-seed gourd	carcuB0185