Csa1G120430 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G120430
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 9111900 .. 9112226 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCTTCCTTTTAAGGGGTTGTGGGGGGCAGAGAGATCACGTTTGTGTCATCCAAGCCTTTACTTTAGCCTCTAGTTTTCAAGCGGTGCTCTTCATCATTGTTCTAATGAAGAGTTATTATGCGATTGAGGGTTGTTTCGTTAACACGCCACCCGGTAGATTGGCTTGTGAGATGGCTTCCAAGGATGGGATGGCTTGCAAACAAAGAGCCTCAACGGTTGAAGGGATGGGCATGCCGCCTTTGGGTATTTCCATCCAAGCGAGGATGACTTCTCTTATGACGACGTCAAGATTAAACGTCAACTTCTTCATGTTGCAGTAG

mRNA sequence

ATGGCGACCTTCCTTTTAAGGGGTTGTGGGGGGCAGAGAGATCACGTTTGTGTCATCCAAGCCTTTACTTTAGCCTCTAGTTTTCAAGCGGTGCTCTTCATCATTGTTCTAATGAAGAGTTATTATGCGATTGAGGGTTGTTTCGTTAACACGCCACCCGGTAGATTGGCTTGTGAGATGGCTTCCAAGGATGGGATGGCTTGCAAACAAAGAGCCTCAACGGTTGAAGGGATGGGCATGCCGCCTTTGGGTATTTCCATCCAAGCGAGGATGACTTCTCTTATGACGACGTCAAGATTAAACGTCAACTTCTTCATGTTGCAGTAG

Coding sequence (CDS)

ATGGCGACCTTCCTTTTAAGGGGTTGTGGGGGGCAGAGAGATCACGTTTGTGTCATCCAAGCCTTTACTTTAGCCTCTAGTTTTCAAGCGGTGCTCTTCATCATTGTTCTAATGAAGAGTTATTATGCGATTGAGGGTTGTTTCGTTAACACGCCACCCGGTAGATTGGCTTGTGAGATGGCTTCCAAGGATGGGATGGCTTGCAAACAAAGAGCCTCAACGGTTGAAGGGATGGGCATGCCGCCTTTGGGTATTTCCATCCAAGCGAGGATGACTTCTCTTATGACGACGTCAAGATTAAACGTCAACTTCTTCATGTTGCAGTAG

Protein sequence

MATFLLRGCGGQRDHVCVIQAFTLASSFQAVLFIIVLMKSYYAIEGCFVNTPPGRLACEMASKDGMACKQRASTVEGMGMPPLGISIQARMTSLMTTSRLNVNFFMLQ*
Homology
[Close]
BLAST of Csa1G120430 vs. TrEMBL
Match: A0A0A0LVH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G120430 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.3e-54
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MATFLLRGCGGQRDHVCVIQAFTLASSFQAVLFIIVLMKSYYAIEGCFVNTPPGRLACEM 60
           MATFLLRGCGGQRDHVCVIQAFTLASSFQAVLFIIVLMKSYYAIEGCFVNTPPGRLACEM
Sbjct: 1   MATFLLRGCGGQRDHVCVIQAFTLASSFQAVLFIIVLMKSYYAIEGCFVNTPPGRLACEM 60

Query: 61  ASKDGMACKQRASTVEGMGMPPLGISIQARMTSLMTTSRLNVNFFMLQ 109
           ASKDGMACKQRASTVEGMGMPPLGISIQARMTSLMTTSRLNVNFFMLQ
Sbjct: 61  ASKDGMACKQRASTVEGMGMPPLGISIQARMTSLMTTSRLNVNFFMLQ 108

[Close]
BLAST of Csa1G120430 vs. NCBI nr
Match: gi|700209731|gb|KGN64827.1| (hypothetical protein Csa_1G120430 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 6.2e-54
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MATFLLRGCGGQRDHVCVIQAFTLASSFQAVLFIIVLMKSYYAIEGCFVNTPPGRLACEM 60
           MATFLLRGCGGQRDHVCVIQAFTLASSFQAVLFIIVLMKSYYAIEGCFVNTPPGRLACEM
Sbjct: 1   MATFLLRGCGGQRDHVCVIQAFTLASSFQAVLFIIVLMKSYYAIEGCFVNTPPGRLACEM 60

Query: 61  ASKDGMACKQRASTVEGMGMPPLGISIQARMTSLMTTSRLNVNFFMLQ 109
           ASKDGMACKQRASTVEGMGMPPLGISIQARMTSLMTTSRLNVNFFMLQ
Sbjct: 61  ASKDGMACKQRASTVEGMGMPPLGISIQARMTSLMTTSRLNVNFFMLQ 108

The following BLAST results are available for this feature:
BLAST of Csa1G120430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVH1_CUCSA4.3e-54100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G120430 PE=4 SV=1[more]
BLAST of Csa1G120430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209731|gb|KGN64827.1|6.2e-54100.00hypothetical protein Csa_1G120430 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU139599cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G120430.1Csa1G120430.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU139599CU139599transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G120430Cucumber (Gy14) v2cgybcuB001
Csa1G120430Cucumber (Gy14) v2cgybcuB097
Csa1G120430Melon (DHL92) v3.6.1cumedB010
Csa1G120430Silver-seed gourdcarcuB0185
Csa1G120430Silver-seed gourdcarcuB0360
Csa1G120430Silver-seed gourdcarcuB0472
Csa1G120430Watermelon (97103) v2cuwmbB034
Csa1G120430Wax gourdcuwgoB016
Csa1G120430Wax gourdcuwgoB049
Csa1G120430Cucumber (Chinese Long) v2cucuB018
Csa1G120430Cucurbita maxima (Rimu)cmacuB203
Csa1G120430Cucurbita maxima (Rimu)cmacuB431
Csa1G120430Cucurbita moschata (Rifu)cmocuB188
Csa1G120430Cucurbita moschata (Rifu)cmocuB421
Csa1G120430Melon (DHL92) v3.5.1cumeB015
Csa1G120430Watermelon (Charleston Gray)cuwcgB037
Csa1G120430Watermelon (97103) v1cuwmB010
Csa1G120430Cucurbita pepo (Zucchini)cpecuB516
Csa1G120430Cucurbita pepo (Zucchini)cpecuB528
Csa1G120430Bottle gourd (USVL1VR-Ls)culsiB044