Csa1G110870 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G110870
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8881688 .. 8882044 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGAAGAAGGAAGAGTCATTTGGAGCAAAGAGATTCTTGATCAAAACTAGAGAAAGAGATAACAAGGAGCCAGAGAGTCTGATACAAAAGAATGTGAAAAAAGGATTTGACAGTAGTGTGCAATGTAATGAAAATGAAGGAGAAATTGAAGGAGTGAGTCCAATTTTGAGAGTACGTGTGAAGATGAAACTTTCTCCTCAAAACCACTTATATATTTGAGACTATACATAAAAAAAGCTTGTTATTAACTAGGTGGAGTTAATCTTAGAGTATTATGTAGTACTACTTCTTTCAATTTATTTTGTAGGACTTGCACTCGTGAAGGAGCAATGTTACTCACATGTAATGTAG

mRNA sequence

ATGGCGATGAAGAAGGAAGAGTCATTTGGAGCAAAGAGATTCTTGATCAAAACTAGAGAAAGAGATAACAAGGAGCCAGAGAGTCTGATACAAAAGAATGTGAAAAAAGGATTTGACAGTAGTGTGCAATGTAATGAAAATGAAGGAGAAATTGAAGGAGTGAGTCCAATTTTGAGAGTACGACTTGCACTCGTGAAGGAGCAATGTTACTCACATGTAATGTAG

Coding sequence (CDS)

ATGGCGATGAAGAAGGAAGAGTCATTTGGAGCAAAGAGATTCTTGATCAAAACTAGAGAAAGAGATAACAAGGAGCCAGAGAGTCTGATACAAAAGAATGTGAAAAAAGGATTTGACAGTAGTGTGCAATGTAATGAAAATGAAGGAGAAATTGAAGGAGTGAGTCCAATTTTGAGAGTACGACTTGCACTCGTGAAGGAGCAATGTTACTCACATGTAATGTAG

Protein sequence

MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRVRLALVKEQCYSHVM*
Homology
[Close]
BLAST of Csa1G110870 vs. TrEMBL
Match: A0A0A0LSC1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G110870 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.7e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV 60
          MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV
Sbjct: 1  MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV 60

Query: 61 RLALVKEQCYSHVM 75
          RLALVKEQCYSHVM
Sbjct: 61 RLALVKEQCYSHVM 74

[Close]
BLAST of Csa1G110870 vs. NCBI nr
Match: gi|700209719|gb|KGN64815.1| (hypothetical protein Csa_1G110870 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.4e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1 

Query: 1  MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV 60
          MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV
Sbjct: 1  MAMKKEESFGAKRFLIKTRERDNKEPESLIQKNVKKGFDSSVQCNENEGEIEGVSPILRV 60

Query: 61 RLALVKEQCYSHVM 75
          RLALVKEQCYSHVM
Sbjct: 61 RLALVKEQCYSHVM 74

The following BLAST results are available for this feature:
BLAST of Csa1G110870 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LSC1_CUCSA1.7e-33100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G110870 PE=4 SV=1[more]
BLAST of Csa1G110870 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209719|gb|KGN64815.1|2.4e-33100.00hypothetical protein Csa_1G110870 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G110870.1Csa1G110870.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G110870CsGy1G013530Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G110870Silver-seed gourdcarcuB0360
Csa1G110870Silver-seed gourdcarcuB0472
Csa1G110870Silver-seed gourdcarcuB1083
Csa1G110870Watermelon (97103) v2cuwmbB034
Csa1G110870Wax gourdcuwgoB016
Csa1G110870Wax gourdcuwgoB049
Csa1G110870Cucumber (Chinese Long) v2cucuB018
Csa1G110870Cucurbita maxima (Rimu)cmacuB203
Csa1G110870Cucurbita maxima (Rimu)cmacuB431
Csa1G110870Cucurbita moschata (Rifu)cmocuB188
Csa1G110870Cucurbita moschata (Rifu)cmocuB421
Csa1G110870Melon (DHL92) v3.5.1cumeB015
Csa1G110870Watermelon (Charleston Gray)cuwcgB037
Csa1G110870Watermelon (97103) v1cuwmB010
Csa1G110870Cucurbita pepo (Zucchini)cpecuB516
Csa1G110870Cucurbita pepo (Zucchini)cpecuB528
Csa1G110870Bottle gourd (USVL1VR-Ls)culsiB044
Csa1G110870Cucumber (Gy14) v2cgybcuB097
Csa1G110870Melon (DHL92) v3.6.1cumedB010