Csa1G097740 (gene) Cucumber (Chinese Long) v2

NameCsa1G097740
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionProtein transport protein SEC61 gamma subunit
LocationChr1 : 8654085 .. 8655642 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCATTGATTCCGTCTTCGATCCACTCCGGGAGTTCGCCAAGGACAGCGTACGTCTCGTCAAGCGCTGTCACAAACCCGATCGCAAAGGTACGGTTTCCGAATCCCTTTTCATCTCTTTGTTTTCATAGATCTTGTAACCAATTTCCTCTGTTTTGCGTGATTTGTGTAGAGTTCACAAAGGTCGCGGTTCGTACAGCGATTGGCTTCGTCGTCATGGGATTCGTTGGTTTCTTCGTCAAGCTCATCTTTATCCCCATCAATAACATCATCGTCGGATCTGGCTAGGTCAGGAGTTTTGGCTTTTCACTTAAGTTTCTCTAGATTTCACTGTTTTGTGAATTGGGCTCTCGTTTGATTTATTGTTTCGCGAGGTTGGGCTACTTCTATTTTAGAAATCTTTATTCATCGTATCAAAAGTAATAATTAGGTTTGATCTATGCCCAATTTCAGTGTTTGGTATACTATTGATAATTTTTTTACATTGCTAGATGAATCTATATCTATGGCATGTAGGTTATGAAGGGAGAAATATTTCGGTTGTTAGAATAGTGTTTTAGCTATGATTCTATGAAGTATTAAGTTGGCCATTGATGACTTCATCGTGTCCCTTTCCTACATACTCCTTGACTTCCTTGTTTCTTAGAGGTTCTCCATGAAAATCATATTCTCCTTTCAAACAAAATTATCCTGAGAGTTTTCTTACCAATTCGTACTGTTTGCACCGTTCAATCAATAATGTAGGATATATTGAACTTTACTATTCAAGGACACAGTTGTACAACATGTTGAACAAATCCTGTTCAAGCAAGGTCTGTAAGATATATTTAACTAAACTATTCTTCTCAAAATTCTTACAATCACGAGGCGAAAACACATCTAGTCTTCTAGCTCAATCAATACCAAGCTTTAGAACGAAATTTGTTGTCCCATACCAAGCCTTATAGATTGCACGCTGTTAGCTATATAGAAGAACACTCATAGTGGGTAGTTTTGAATGAGGGAGCATTTGGAGTTCTGAATTGGTTATTATATTTTGCTGGAATAGTTTATAGGATTTAATAGTCTACCCCACCCAATTTAGGTAGGGGGCTTAAACGCCCGCTAATTGGTTGCTCAATTTACCCACTGATCTAGACTCTTACTTTAATCTTTGAACGTACGAAAGAGGGTGGAAAACCAAATTTTGTTGGGTGACGTATTTTGCTCACCTTTGCATAAGCATAATGATTGATGCATTCTACTTGATGTCTGCATGATTGTGCATTGTTTTCATTCCCTAATAACATTTGCATATATTAATTGATCAGTGTGATTGTTTGTGGATTGAACCCTTTTTGAGACATTATCTTGGGTAAATCTTTCAATTGGTTATGCCCTTCAATGTTCATTTATTGCGTGTTGAATCTGTTTTGCAGACAGCTGAGGCCACAAAAGGAGCAGGCCGGACAATATAGAAGAATGGAACTTGATCAACTATTTCAAATCCTTACCAATGTTATTATTAATTTAAAAAGCTTAATTTATTTTCTAGAGAAGTATAAAACTCCATGA

mRNA sequence

ATGGACGCCATTGATTCCGTCTTCGATCCACTCCGGGAGTTCGCCAAGGACAGCGTACGTCTCGTCAAGCGCTGTCACAAACCCGATCGCAAAGGTACGAGTTCACAAAGGTCGCGGTTCGTACAGCGATTGGCTTCGTCGTCATGGGATTCGTTGGTTTCTTCGTCAAGCTCATCTTTATCCCCATCAATAACATCATCGTCGGATCTGGCTAGACAGCTGAGGCCACAAAAGGAGCAGGCCGGACAATATAGAAGAATGGAACTTGATCAACTATTTCAAATCCTTACCAATGTTATTATTAATTTAAAAAGCTTAATTTATTTTCTAGAGAAGTATAAAACTCCATGA

Coding sequence (CDS)

ATGGACGCCATTGATTCCGTCTTCGATCCACTCCGGGAGTTCGCCAAGGACAGCGTACGTCTCGTCAAGCGCTGTCACAAACCCGATCGCAAAGGTACGAGTTCACAAAGGTCGCGGTTCGTACAGCGATTGGCTTCGTCGTCATGGGATTCGTTGGTTTCTTCGTCAAGCTCATCTTTATCCCCATCAATAACATCATCGTCGGATCTGGCTAGACAGCTGAGGCCACAAAAGGAGCAGGCCGGACAATATAGAAGAATGGAACTTGATCAACTATTTCAAATCCTTACCAATGTTATTATTAATTTAAAAAGCTTAATTTATTTTCTAGAGAAGTATAAAACTCCATGA

Protein sequence

MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSSSSSSLSPSITSSSDLARQLRPQKEQAGQYRRMELDQLFQILTNVIINLKSLIYFLEKYKTP*
BLAST of Csa1G097740 vs. Swiss-Prot
Match: SC61G_ORYSJ (Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica GN=Os02g0178400 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 29/31 (93.55%), Postives = 28/31 (90.32%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDA+DSV DPLREFAKDSVRLVKRCHKPDRK
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK 31

BLAST of Csa1G097740 vs. Swiss-Prot
Match: S61G2_ARATH (Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana GN=SEC61G2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSV DPLR+FAKDS+RLVKRCHKPDRK
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK 31

BLAST of Csa1G097740 vs. Swiss-Prot
Match: S61G1_ARATH (Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61G1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSV DPLR+FAKDS+RLVKRCHKPDRK
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK 31

BLAST of Csa1G097740 vs. Swiss-Prot
Match: S61G3_ARATH (Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana GN=SEC61G3 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          M+AIDS  DPLR+FAK SVRLV+RCHKPDRK
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRK 31

BLAST of Csa1G097740 vs. TrEMBL
Match: A0A0A0LXS8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097740 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-56
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

Query: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSSSSSSL 60
           MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSSSSSSL
Sbjct: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSSSSSSL 60

Query: 61  SPSITSSSDLARQLRPQKEQAGQYRRMELDQLFQILTNVIINLKSLIYFLEKYKTP 117
           SPSITSSSDLARQLRPQKEQAGQYRRMELDQLFQILTNVIINLKSLIYFLEKYKTP
Sbjct: 61  SPSITSSSDLARQLRPQKEQAGQYRRMELDQLFQILTNVIINLKSLIYFLEKYKTP 116

BLAST of Csa1G097740 vs. TrEMBL
Match: K3Y480_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_009018mg PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.0e-13
Identity = 56/109 (51.38%), Postives = 58/109 (53.21%), Query Frame = 1

Query: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTS---------SQRSRFV---------- 60
           MDAIDSV DPLR+FAKDSVRLVKRCHKPDRKGT          S  SRFV          
Sbjct: 1   MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRKGTCQAPSIRRPVSNPSRFVFCLRQIWQWF 60

Query: 61  ------------------QRLASSSWDSLVSSSSSSLSPSITSSSDLAR 73
                             +R  SSSW S  SSSSSS SPS  SSS  AR
Sbjct: 61  NPICVCMCAQSSPRWRRGRRSGSSSWASSASSSSSSSSPSTISSSVPAR 109

BLAST of Csa1G097740 vs. TrEMBL
Match: A0A0E0HUE4_ORYNI (Uncharacterized protein OS=Oryza nivara PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-09
Identity = 40/55 (72.73%), Postives = 41/55 (74.55%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSS 56
          MDAIDSV DPLREFAKDSVRLVKRCHKPDRKG         +RLASS    LVSS
Sbjct: 1  MDAIDSVVDPLREFAKDSVRLVKRCHKPDRKGR--------ERLASS---RLVSS 44

BLAST of Csa1G097740 vs. TrEMBL
Match: A0A0D3GJE5_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.9e-09
Identity = 40/55 (72.73%), Postives = 41/55 (74.55%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSS 56
          MDAIDSV DPLREFAKDSVRLVKRCHKPDRKG         +RLASS    LVSS
Sbjct: 1  MDAIDSVVDPLREFAKDSVRLVKRCHKPDRKGR--------ERLASS---RLVSS 44

BLAST of Csa1G097740 vs. TrEMBL
Match: A0A0A9DB36_ARUDO (Protein transport protein SEC61 gamma subunit OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.0e-08
Identity = 31/33 (93.94%), Postives = 32/33 (96.97%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGT 34
          MDAIDSV DPLR+FAKDSVRLVKRCHKPDRKGT
Sbjct: 1  MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRKGT 33

BLAST of Csa1G097740 vs. TAIR10
Match: AT4G24920.1 (AT4G24920.1 secE/sec61-gamma protein transport protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSV DPLR+FAKDS+RLVKRCHKPDRK
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK 31

BLAST of Csa1G097740 vs. TAIR10
Match: AT5G50460.1 (AT5G50460.1 secE/sec61-gamma protein transport protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-10
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSV DPLR+FAKDS+RLVKRCHKPDRK
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK 31

BLAST of Csa1G097740 vs. TAIR10
Match: AT3G48570.1 (AT3G48570.1 secE/sec61-gamma protein transport protein)

HSP 1 Score: 57.0 bits (136), Expect = 9.0e-09
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          M+AIDS  DPLR+FAK SVRLV+RCHKPDRK
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRK 31

BLAST of Csa1G097740 vs. NCBI nr
Match: gi|700209700|gb|KGN64796.1| (hypothetical protein Csa_1G097740 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 3.2e-56
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1

Query: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSSSSSSL 60
           MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSSSSSSL
Sbjct: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSSSSSSL 60

Query: 61  SPSITSSSDLARQLRPQKEQAGQYRRMELDQLFQILTNVIINLKSLIYFLEKYKTP 117
           SPSITSSSDLARQLRPQKEQAGQYRRMELDQLFQILTNVIINLKSLIYFLEKYKTP
Sbjct: 61  SPSITSSSDLARQLRPQKEQAGQYRRMELDQLFQILTNVIINLKSLIYFLEKYKTP 116

BLAST of Csa1G097740 vs. NCBI nr
Match: gi|944246846|gb|KQL11140.1| (hypothetical protein SETIT_009018mg [Setaria italica])

HSP 1 Score: 82.4 bits (202), Expect = 5.7e-13
Identity = 56/109 (51.38%), Postives = 58/109 (53.21%), Query Frame = 1

Query: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTS---------SQRSRFV---------- 60
           MDAIDSV DPLR+FAKDSVRLVKRCHKPDRKGT          S  SRFV          
Sbjct: 1   MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRKGTCQAPSIRRPVSNPSRFVFCLRQIWQWF 60

Query: 61  ------------------QRLASSSWDSLVSSSSSSLSPSITSSSDLAR 73
                             +R  SSSW S  SSSSSS SPS  SSS  AR
Sbjct: 61  NPICVCMCAQSSPRWRRGRRSGSSSWASSASSSSSSSSPSTISSSVPAR 109

BLAST of Csa1G097740 vs. NCBI nr
Match: gi|1009151957|ref|XP_015893833.1| (PREDICTED: protein transport protein Sec61 subunit gamma [Ziziphus jujuba])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 31

BLAST of Csa1G097740 vs. NCBI nr
Match: gi|356501180|ref|XP_003519405.1| (PREDICTED: protein transport protein Sec61 subunit gamma [Glycine max])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 31

BLAST of Csa1G097740 vs. NCBI nr
Match: gi|728822123|gb|KHG04662.1| (hypothetical protein F383_02719 [Gossypium arboreum])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 1

Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 31

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SC61G_ORYSJ1.0e-0993.55Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica GN... [more]
S61G2_ARATH2.2e-0990.32Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana GN=SEC61... [more]
S61G1_ARATH2.2e-0990.32Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana GN=SEC61... [more]
S61G3_ARATH1.6e-0780.65Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana GN=SEC61... [more]
Match NameE-valueIdentityDescription
A0A0A0LXS8_CUCSA2.2e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097740 PE=4 SV=1[more]
K3Y480_SETIT4.0e-1351.38Uncharacterized protein OS=Setaria italica GN=SETIT_009018mg PE=4 SV=1[more]
A0A0E0HUE4_ORYNI5.9e-0972.73Uncharacterized protein OS=Oryza nivara PE=3 SV=1[more]
A0A0D3GJE5_9ORYZ5.9e-0972.73Uncharacterized protein OS=Oryza barthii PE=3 SV=1[more]
A0A0A9DB36_ARUDO1.0e-0893.94Protein transport protein SEC61 gamma subunit OS=Arundo donax PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24920.11.3e-1090.32 secE/sec61-gamma protein transport protein[more]
AT5G50460.11.3e-1090.32 secE/sec61-gamma protein transport protein[more]
AT3G48570.19.0e-0980.65 secE/sec61-gamma protein transport protein[more]
Match NameE-valueIdentityDescription
gi|700209700|gb|KGN64796.1|3.2e-56100.00hypothetical protein Csa_1G097740 [Cucumis sativus][more]
gi|944246846|gb|KQL11140.1|5.7e-1351.38hypothetical protein SETIT_009018mg [Setaria italica][more]
gi|1009151957|ref|XP_015893833.1|1.9e-08100.00PREDICTED: protein transport protein Sec61 subunit gamma [Ziziphus jujuba][more]
gi|356501180|ref|XP_003519405.1|1.9e-08100.00PREDICTED: protein transport protein Sec61 subunit gamma [Glycine max][more]
gi|728822123|gb|KHG04662.1|1.9e-08100.00hypothetical protein F383_02719 [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006605 protein targeting
biological_process GO:0071806 protein transmembrane transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0015031 protein transport
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016020 membrane
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU090023cucumber EST collection version 3.0transcribed_cluster
CU096391cucumber EST collection version 3.0transcribed_cluster
CU108034cucumber EST collection version 3.0transcribed_cluster
CU121264cucumber EST collection version 3.0transcribed_cluster
CU148455cucumber EST collection version 3.0transcribed_cluster
CU148785cucumber EST collection version 3.0transcribed_cluster
CU173016cucumber EST collection version 3.0transcribed_cluster
CU174977cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G097740.1Csa1G097740.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU108034CU108034transcribed_cluster
CU096391CU096391transcribed_cluster
CU090023CU090023transcribed_cluster
CU173016CU173016transcribed_cluster
CU148785CU148785transcribed_cluster
CU148455CU148455transcribed_cluster
CU121264CU121264transcribed_cluster
CU174977CU174977transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12309SEC61 GAMMA SUBUNITcoord: 1..31
score: 1.9

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None