Csa1G096630 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G096630
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Probable mediator of RNA polymerase II transcription subunit 26c
Location	Chr1 : 8490749 .. 8491044 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGGTCAGGTGAGTATATATATATATATAATATTATTATACGCACTAAAAAGTTGTAATATTATTTCTAAAGTTTCGTAAATGTTTCAAATTTTAGTTTTAAGTCATGCAAAACTATTTAGATGCCAATTCTCAATGA

mRNA sequence

ATGGAGGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGGTCAGATGCCAATTCTCAATGA

Coding sequence (CDS)

ATGGAGGTCGCTTCATTAGATTACGGTAACCAATTGAAGAATCGGAGAGATGGAATCGTTGAGAGGCTCTACGCGTTGACTTCGCCGCCATCTCGATGTCGGAACTGTGATACGGATCGCAACCATGACGGTCGCTCTAATGGCTGTGAAATCAAACAGGGGTCAGATGCCAATTCTCAATGA

Protein sequence

MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSDANSQ*

Homology

[Close]

BLAST of Csa1G096630 vs. Swiss-Prot
Match: MD26C_ARATH (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-07
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 1


Query: 3  VASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCD 38
          VASLDYG +LK RRD IVERLYA TS  ++CRNCD
Sbjct: 27 VASLDYGQELKRRRDNIVERLYA-TSMANKCRNCD 60

[Close]

BLAST of Csa1G096630 vs. TrEMBL
Match: A0A0A0LXQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096630 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.9e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSDANSQ 60
          MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSDANSQ
Sbjct: 1  MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSDANSQ 60

[Close]

BLAST of Csa1G096630 vs. TrEMBL
Match: A0A0A0KHV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486670 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS 56
          MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS
Sbjct: 28 MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS 82

[Close]

BLAST of Csa1G096630 vs. TrEMBL
Match: M5WBR6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008362mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-07
Identity = 29/46 (63.04%), Postives = 34/46 (73.91%), Query Frame = 1


Query: 3  VASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNG 49
          VAS+DYG +LK+RRDGIVERLYA T  P RC NCDTD  +  +  G
Sbjct: 27 VASVDYGTELKHRRDGIVERLYATTCMPPRCPNCDTDGPNGNQPKG 72

[Close]

BLAST of Csa1G096630 vs. TrEMBL
Match: A0A151TLA9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_024173 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.2e-06
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1


Query: 3  VASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTD 40
          VAS+D+G++LK RRDGIVERLY  +S P RCRNC+ D
Sbjct: 27 VASVDHGDELKRRRDGIVERLYVASSAPPRCRNCEPD 63

[Close]

BLAST of Csa1G096630 vs. TrEMBL
Match: A0A061FYN3_THECC (Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_045322 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.5e-06
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1


Query: 3  VASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEI-KQGS 56
          VASLDYG +LK RRDGIVERLYA TS  +RC++CD       RSNG ++ K+GS
Sbjct: 27 VASLDYGQELKQRRDGIVERLYA-TSMVTRCKSCDFGE----RSNGYQVNKEGS 75

[Close]

BLAST of Csa1G096630 vs. TAIR10
Match: AT5G09850.1 (AT5G09850.1 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-08
Identity = 26/35 (74.29%), Postives = 27/35 (77.14%), Query Frame = 1


Query: 3  VASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCD 38
          VASLDYG +LK RRD IVERLYA TS  ++CRNCD
Sbjct: 27 VASLDYGQELKRRRDNIVERLYA-TSMANKCRNCD 60

[Close]

BLAST of Csa1G096630 vs. NCBI nr
Match: gi|700209685|gb|KGN64781.1| (hypothetical protein Csa_1G096630 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 2.8e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1


Query: 1  MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSDANSQ 60
          MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSDANSQ
Sbjct: 1  MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGSDANSQ 60

[Close]

BLAST of Csa1G096630 vs. NCBI nr
Match: gi|659080819|ref|XP_008440997.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS 56
          MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS
Sbjct: 28 MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS 82

[Close]

BLAST of Csa1G096630 vs. NCBI nr
Match: gi|449448454|ref|XP_004141981.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 2.2e-24
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1


Query: 1  MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS 56
          MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS
Sbjct: 28 MEVASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQGS 82

[Close]

BLAST of Csa1G096630 vs. NCBI nr
Match: gi|1012257508|ref|XP_015945225.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Arachis duranensis])

HSP 1 Score: 67.4 bits (163), Expect = 9.9e-09
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 3  VASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQ 54
          VASLD G++L+ RRDGI+ER++A T+PP  CRNCD DRN   RSNG +IK+
Sbjct: 27 VASLDCGDELRRRRDGIIERIFAATTPPLPCRNCDGDRNL--RSNGYQIKK 75

[Close]

BLAST of Csa1G096630 vs. NCBI nr
Match: gi|1021581102|ref|XP_016179913.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Arachis ipaensis])

HSP 1 Score: 67.0 bits (162), Expect = 1.3e-08
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 3  VASLDYGNQLKNRRDGIVERLYALTSPPSRCRNCDTDRNHDGRSNGCEIKQ 54
          VASLD G++L+ RRDGI+ER++A T+PP  CRNCD DRN   RSNG +IK+
Sbjct: 27 VASLDCGDELRRRRDGIIERIFAATTPPLPCRNCDGDRNL--RSNGHQIKK 75

The following BLAST results are available for this feature:

BLAST of Csa1G096630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD26C_ARATH	9.3e-07	74.29	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]

BLAST of Csa1G096630 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXQ9_CUCSA	1.9e-27	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096630 PE=4 SV=1	[more]
A0A0A0KHV9_CUCSA	1.5e-24	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G486670 PE=4 SV=1	[more]
M5WBR6_PRUPE	1.3e-07	63.04	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008362mg PE=4 SV=1	[more]
A0A151TLA9_CAJCA	3.2e-06	67.57	Uncharacterized protein OS=Cajanus cajan GN=KK1_024173 PE=4 SV=1	[more]
A0A061FYN3_THECC	5.5e-06	61.11	Transcription elongation factor (TFIIS) family protein, putative isoform 1 OS=Th...	[more]

BLAST of Csa1G096630 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G09850.1	5.2e-08	74.29	Transcription elongation factor (TFIIS) family protein	[more]

BLAST of Csa1G096630 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209685\|gb\|KGN64781.1\|	2.8e-27	100.00	hypothetical protein Csa_1G096630 [Cucumis sativus]	[more]
gi\|659080819\|ref\|XP_008440997.1\|	2.2e-24	100.00	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc...	[more]
gi\|449448454\|ref\|XP_004141981.1\|	2.2e-24	100.00	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Cuc...	[more]
gi\|1012257508\|ref\|XP_015945225.1\|	9.9e-09	62.75	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ara...	[more]
gi\|1021581102\|ref\|XP_016179913.1\|	1.3e-08	62.75	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c [Ara...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G096630.1	Csa1G096630.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G096630	Wax gourd	cuwgoB049
Csa1G096630	Cucumber (Gy14) v1	cgycuB314
Csa1G096630	Cucurbita maxima (Rimu)	cmacuB203
Csa1G096630	Cucurbita maxima (Rimu)	cmacuB431
Csa1G096630	Cucurbita moschata (Rifu)	cmocuB188
Csa1G096630	Cucurbita moschata (Rifu)	cmocuB421
Csa1G096630	Melon (DHL92) v3.5.1	cumeB015
Csa1G096630	Watermelon (Charleston Gray)	cuwcgB037
Csa1G096630	Watermelon (97103) v1	cuwmB010
Csa1G096630	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G096630	Cucurbita pepo (Zucchini)	cpecuB528
Csa1G096630	Bottle gourd (USVL1VR-Ls)	culsiB047
Csa1G096630	Cucumber (Gy14) v2	cgybcuB001
Csa1G096630	Melon (DHL92) v3.6.1	cumedB010
Csa1G096630	Silver-seed gourd	carcuB0472
Csa1G096630	Watermelon (97103) v2	cuwmbB034