Csa1G096100 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G096100
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr1 : 8470670 .. 8472391 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATCAGAAGCCTGGGCTTTCATCAAACAAGTGGCTGAAGGACGATGGTTTTCGGTTTGGGCAGGTATGATGATGATGATCGGTAACGGTACAACATACATTTTCGGAACATACTCCAAAGTCCTCAAGTCAGAATTTGATTACAGCCAAACCCAAGTTAACATGTTAGGATTTGCTAAAGATCTCGGTAACAATGCTGGGATTATCGCGGGTTTACTCTCCGAGTTCGTTCCAACGTGGGTTCTCTTCATGATCGGCGCATTCCAAAACTTCACTGGCTACTTCTTGATATGGCTATCCATGACACGCCGGATCAGTCAACCAGCATTTTGGCAAATGTTTCTTTGCGTTTGCTTTGGCTCTAATTCTTCTAATTATTCCAATACAGCCATTATGGTCACTAGTCTTAGAAATTTCCCGGACCGTCGTGGTATCATTTTAGGCTTACTCAAAGGGTATGTTGGTATTGGAGGTGCCATTTTAACCCAAATTTGTTTAGGTTTTTATGGCCCTGAAGATCCATCAAATATTGTTCTTCTCTTTGCTTGGTTTCCCTCAGTCCTAATCCTTCTTATTTCCAATTCAATTCGACCAATTCATATCCGTAAGCATCCCGAAGAGCTCAAAGTTTTTTACCATTTACTTTATGTTTCTATTGTTCTAGCAATCTTCATCTTGTTTTTGACCATGTCAGAAAAACAAGTTGTTTTTTCTCAGTCTGCTTATGCGAGTGGCGCGTCCGTCGTGATTGCCTTACTCTTTTTACCTCTTTTGATTGCTTGTAGAGAAGAATTCTTATTGTACAAACTCAAGAAACAAAACCATAACCTTGAACCTTCTGTCACCCTCTCCATTATTGATCAAAAGGTACCAAACAGTCACAAACCATTTTCTACATTGGAAGAAATTGCAGAGATTTCTCCGTCTTGTTTGTCGAACATATGTAACAAACCACATCGAGGCGAGGATTTCACCATCTTACAAGCTATCTTCAGTGTAGATATGGTTTTAATTTGTTTAGCTACTTTTGCTGGATGTGGGTCTTCTCTTGCAGCCATTGATAATTTAGGTCAAATTGGCGAATCACTCGGCTACCCACCACGAGCTATAGGCATCTTCGTTTCTTGGGTTTCTATATTCAATTTCTTCGGCCGAGTCGTCTCTGGTTTCATCTCTGAATTGATGATGATCAAATATAAACTACCGCGTCCTCTAATGTTTGCCTTTGCCTTTCTTCTCACTTGCATTGGCCAGCTTTGTATAGCGTATCCGTTTCCAGGTTCCCTGTATGTAGCTTCCATCGTTATCGGATTTGGATTCGGAGCACAAAATCCATTGCTGTTCGCGGTAATCTCAGAGATGTTTGGCCTAAAACATTACTCCATATTGTTCAATTGTGGGCAATTGGCAGTCCCATTAGGGTCTTACATACTAAATGTGGATATAGTTGGGAAACTGTACGACGCTGAAGCATTACGTGAAGGTAAAAAGATGACGGGCAGGGGAATAAATTGCAGTGGAGCTCATTGTTTTGGTGGATCTTTTACAATTTTGGCTGCATCCACATTGTTTGGAGCATTGGTAATGCTTGTATTGGCTTATAGGACAAGAGAATATTATAGATGGGATGTATATAAGAATTACAAAGAGGATATGTGGATTCCTCAAGCAGAGATGGAGTTTTATCGCTTAGACAACAAGAAGAACATTGATGACTAA

mRNA sequence

ATGGGATCAGAAGCCTGGGCTTTCATCAAACAAGTGGCTGAAGGACGATGGTTTTCGGTTTGGGCAGTTGTTTTTTCTCAGTCTGCTTATGCGAGTGGCGCGTCCGTCGTGATTGCCTTACTCTTTTTACCTCTTTTGATTGCTTGTAGAGAAGAATTCTTATTGTACAAACTCAAGAAACAAAACCATAACCTTGAACCTTCTGTCACCCTCTCCATTATTGATCAAAAGGTACCAAACAGTCACAAACCATTTTCTACATTGGAAGAAATTGCAGAGATTTCTCCGTCTTCTATCTTCAGTGTAGATATGGTTTTAATTTGTTTAGCTACTTTTGCTGGATCATTGGTAATGCTTGTATTGGCTTATAGGACAAGAGAATATTATAGATGGGATGTATATAAGAATTACAAAGAGGATATGTGGATTCCTCAAGCAGAGATGGAGTTTTATCGCTTAGACAACAAGAAGAACATTGATGACTAA

Coding sequence (CDS)

ATGGGATCAGAAGCCTGGGCTTTCATCAAACAAGTGGCTGAAGGACGATGGTTTTCGGTTTGGGCAGTTGTTTTTTCTCAGTCTGCTTATGCGAGTGGCGCGTCCGTCGTGATTGCCTTACTCTTTTTACCTCTTTTGATTGCTTGTAGAGAAGAATTCTTATTGTACAAACTCAAGAAACAAAACCATAACCTTGAACCTTCTGTCACCCTCTCCATTATTGATCAAAAGGTACCAAACAGTCACAAACCATTTTCTACATTGGAAGAAATTGCAGAGATTTCTCCGTCTTCTATCTTCAGTGTAGATATGGTTTTAATTTGTTTAGCTACTTTTGCTGGATCATTGGTAATGCTTGTATTGGCTTATAGGACAAGAGAATATTATAGATGGGATGTATATAAGAATTACAAAGAGGATATGTGGATTCCTCAAGCAGAGATGGAGTTTTATCGCTTAGACAACAAGAAGAACATTGATGACTAA

Protein sequence

MGSEAWAFIKQVAEGRWFSVWAVVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNLEPSVTLSIIDQKVPNSHKPFSTLEEIAEISPSSIFSVDMVLICLATFAGSLVMLVLAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLDNKKNIDD*

Homology

[Close]

BLAST of Csa1G096100 vs. TrEMBL
Match: A0A0A0LXQ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096100 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 3.7e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MGSEAWAFIKQVAEGRWFSVWAVVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKK 60
           MGSEAWAFIKQVAEGRWFSVWAVVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKK
Sbjct: 1   MGSEAWAFIKQVAEGRWFSVWAVVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKK 60

Query: 61  QNHNLEPSVTLSIIDQKVPNSHKPFSTLEEIAEISPSSIFSVDMVLICLATFAGSLVMLV 120
           QNHNLEPSVTLSIIDQKVPNSHKPFSTLEEIAEISPSSIFSVDMVLICLATFAGSLVMLV
Sbjct: 61  QNHNLEPSVTLSIIDQKVPNSHKPFSTLEEIAEISPSSIFSVDMVLICLATFAGSLVMLV 120

Query: 121 LAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLDNKKNIDD 162
           LAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLDNKKNIDD
Sbjct: 121 LAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLDNKKNIDD 161

[Close]

BLAST of Csa1G096100 vs. TrEMBL
Match: A0A0A0LVD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097660 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.0e-11
Identity = 58/180 (32.22%), Postives = 86/180 (47.78%), Query Frame = 1


Query: 24  VFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNLEPSVTLSIIDQK---VPN 83
           VFS   Y  G  V++ L+ LPLLIA +EEF L+KL +Q    +PSV +SI  QK   +P 
Sbjct: 131 VFSHGNYIGGVVVIVVLISLPLLIAIKEEFFLFKLNQQTK--DPSV-VSIPVQKLEEIPE 190

Query: 84  SHKPFSTLEEIAEISP-------SSIFSVDMVLICLATFA-------------------- 143
           +  P S    ++            ++FS+DM LI +AT +                    
Sbjct: 191 TSLPLSLSNNLSNPQRGEDFSILQALFSIDMTLIFIATISACGSSNGKGLTCKGAHCFSE 250

Query: 144 -----------GSLVMLVLAYRTREYYRWDVYKNYK-EDMWIPQAEMEFYRLDNKKNIDD 162
                      G++   VLAYRTRE+Y+ D+YK Y+ E MW+   + +     + K +DD
Sbjct: 251 SFIILVGVTTFGAMASFVLAYRTREFYKGDIYKRYRDEQMWVKLKDDQ-----HTKKVDD 302

[Close]

BLAST of Csa1G096100 vs. TrEMBL
Match: A0A0A0LVD8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097660 PE=4 SV=1)

HSP 1 Score: 33.5 bits (75), Expect = 2.9e+02
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 1


Query: 6  WAFIKQVAEGRWFSVWA 23
          W F+KQV EGRWF+++A
Sbjct: 7  WRFVKQVVEGRWFTIFA 23

HSP 2 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 23  VVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNL---EPSVTLSIIDQKVP 82
           V FS+  Y +GA+V+I LLFLPL+I CREE LLYKL KQN +    +     SI  +K+ 
Sbjct: 155 VAFSRGGYRNGAAVIIVLLFLPLVIVCREEHLLYKLNKQNEDSSFNDQKPRSSITTEKIK 214

Query: 83  NSHKPF 86
           N    F
Sbjct: 215 NLRSCF 220

[Close]

BLAST of Csa1G096100 vs. TrEMBL
Match: A0A0A0LUU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096085 PE=4 SV=1)

HSP 1 Score: 34.7 bits (78), Expect = 1.3e+02
Identity = 13/22 (59.09%), Postives = 18/22 (81.82%), Query Frame = 1


Query: 1  MGSEAWAFIKQVAEGRWFSVWA 23
          MG++ W F +QV +GRWFSV+A
Sbjct: 1  MGTKTWDFTEQVIKGRWFSVFA 22

[Close]

BLAST of Csa1G096100 vs. NCBI nr
Match: gi|700209680|gb|KGN64776.1| (hypothetical protein Csa_1G096100 [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 5.4e-86
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MGSEAWAFIKQVAEGRWFSVWAVVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKK 60
           MGSEAWAFIKQVAEGRWFSVWAVVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKK
Sbjct: 1   MGSEAWAFIKQVAEGRWFSVWAVVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKK 60

Query: 61  QNHNLEPSVTLSIIDQKVPNSHKPFSTLEEIAEISPSSIFSVDMVLICLATFAGSLVMLV 120
           QNHNLEPSVTLSIIDQKVPNSHKPFSTLEEIAEISPSSIFSVDMVLICLATFAGSLVMLV
Sbjct: 61  QNHNLEPSVTLSIIDQKVPNSHKPFSTLEEIAEISPSSIFSVDMVLICLATFAGSLVMLV 120

Query: 121 LAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLDNKKNIDD 162
           LAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLDNKKNIDD
Sbjct: 121 LAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLDNKKNIDD 161

[Close]

BLAST of Csa1G096100 vs. NCBI nr
Match: gi|449459148|ref|XP_004147308.1| (PREDICTED: uncharacterized protein LOC101204150 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 5.4e-38
Identity = 91/111 (81.98%), Postives = 92/111 (82.88%), Query Frame = 1


Query: 23  VVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNLEPSVTLSIIDQKVPNSH 82
           VVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNLEPSVTLSIIDQKVPNSH
Sbjct: 236 VVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNLEPSVTLSIIDQKVPNSH 295

Query: 83  KPFSTLEEIAEISPS-------------------SIFSVDMVLICLATFAG 115
           KPFSTLEEIAEISPS                   +IFSVDMVLICLATFAG
Sbjct: 296 KPFSTLEEIAEISPSCLSNICNKPHRGEDFTILQAIFSVDMVLICLATFAG 346

[Close]

BLAST of Csa1G096100 vs. NCBI nr
Match: gi|449459148|ref|XP_004147308.1| (PREDICTED: uncharacterized protein LOC101204150 [Cucumis sativus])

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 1


Query: 95  SPSSIFSVDMVLICLATFAGSLVMLVLAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLD 154
           S +  F     ++  +T  G+LVMLVLAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLD
Sbjct: 507 SGAHCFGGSFTILAASTLFGALVMLVLAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLD 566

Query: 155 NKKNIDD 162
           NKKNIDD
Sbjct: 567 NKKNIDD 573

HSP 2 Score: 52.0 bits (123), Expect = 1.1e-03
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = 1


Query: 1  MGSEAWAFIKQVAEGRWFSVWA 23
          MGSEAWAFIKQVAEGRWFSVWA
Sbjct: 1  MGSEAWAFIKQVAEGRWFSVWA 22

HSP 3 Score: 129.0 bits (323), Expect = 7.4e-27
Identity = 72/111 (64.86%), Postives = 80/111 (72.07%), Query Frame = 1


Query: 23  VVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNLEPSVTLSIIDQKVPNSH 82
           V FS +AYASGA VV+ALL LPLLI CREEFLLYKLKKQN N +PSV LSI+DQKV N  
Sbjct: 236 VTFSPAAYASGAYVVVALLCLPLLIVCREEFLLYKLKKQNLNRDPSVALSIVDQKVTNCP 295

Query: 83  KPFSTLEEIAEISPS-------------------SIFSVDMVLICLATFAG 115
           K FSTLEEIAEISPS                   +IFS+DM+LICLATF+G
Sbjct: 296 KSFSTLEEIAEISPSCISNICNKPDRGNDFTVLQAIFSIDMLLICLATFSG 346

[Close]

BLAST of Csa1G096100 vs. NCBI nr
Match: gi|659072286|ref|XP_008464773.1| (PREDICTED: uncharacterized protein LOC103502580 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-19
Identity = 45/62 (72.58%), Postives = 53/62 (85.48%), Query Frame = 1


Query: 100 FSVDMVLICLATFAGSLVMLVLAYRTREYYRWDVYKNYKEDMWIPQAEMEFYRLDNKKNI 159
           F     ++  +T  G+LVML+LAYRTR+YYRWD+YKNYKEDMWIPQAEMEFYRLDN+KNI
Sbjct: 512 FGGSFTILAASTLFGALVMLLLAYRTRDYYRWDIYKNYKEDMWIPQAEMEFYRLDNRKNI 571

Query: 160 DD 162
           DD
Sbjct: 572 DD 573

HSP 2 Score: 42.7 bits (99), Expect = 6.9e-01
Identity = 18/22 (81.82%), Postives = 20/22 (90.91%), Query Frame = 1


Query: 1  MGSEAWAFIKQVAEGRWFSVWA 23
          M SEAWAFIKQV +GRWFSV+A
Sbjct: 1  MESEAWAFIKQVVQGRWFSVYA 22

HSP 3 Score: 78.2 bits (191), Expect = 1.5e-11
Identity = 58/180 (32.22%), Postives = 86/180 (47.78%), Query Frame = 1


Query: 24  VFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNLEPSVTLSIIDQK---VPN 83
           VFS   Y  G  V++ L+ LPLLIA +EEF L+KL +Q    +PSV +SI  QK   +P 
Sbjct: 131 VFSHGNYIGGVVVIVVLISLPLLIAIKEEFFLFKLNQQTK--DPSV-VSIPVQKLEEIPE 190

Query: 84  SHKPFSTLEEIAEISP-------SSIFSVDMVLICLATFA-------------------- 143
           +  P S    ++            ++FS+DM LI +AT +                    
Sbjct: 191 TSLPLSLSNNLSNPQRGEDFSILQALFSIDMTLIFIATISACGSSNGKGLTCKGAHCFSE 250

Query: 144 -----------GSLVMLVLAYRTREYYRWDVYKNYK-EDMWIPQAEMEFYRLDNKKNIDD 162
                      G++   VLAYRTRE+Y+ D+YK Y+ E MW+   + +     + K +DD
Sbjct: 251 SFIILVGVTTFGAMASFVLAYRTREFYKGDIYKRYRDEQMWVKLKDDQ-----HTKKVDD 302

[Close]

BLAST of Csa1G096100 vs. NCBI nr
Match: gi|700209691|gb|KGN64787.1| (hypothetical protein Csa_1G097660 [Cucumis sativus])

HSP 1 Score: 33.5 bits (75), Expect = 4.2e+02
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = 1


Query: 6  WAFIKQVAEGRWFSVWA 23
          W F+KQV EGRWF+++A
Sbjct: 7  WRFVKQVVEGRWFTIFA 23

HSP 2 Score: 77.8 bits (190), Expect = 1.9e-11
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1


Query: 23  VVFSQSAYASGASVVIALLFLPLLIACREEFLLYKLKKQNHNLEPSVTL--------SII 82
           V F++  Y +GA+V++ LLFLPL+I CREE +LYKL KQN +   ++++        SI 
Sbjct: 236 VAFTRRGYTNGAAVIVVLLFLPLVIVCREEHVLYKLNKQNEDSSFNISINDHQKPHSSIT 295

Query: 83  DQKVPNSHKPFSTLEEIAEISP-----SSIFSVDMVLICLATFAGS 116
            +K  NS   FS +    E         +IFS+DM LI LATF+GS
Sbjct: 296 TEKTENSRSYFSKIWNKPERGEDFSILQAIFSIDMTLIFLATFSGS 341

The following BLAST results are available for this feature:

BLAST of Csa1G096100 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXQ2_CUCSA	3.7e-86	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096100 PE=4 SV=1	[more]
A0A0A0LVD8_CUCSA	1.0e-11	32.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097660 PE=4 SV=1	[more]
A0A0A0LVD8_CUCSA	2.9e+02	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G097660 PE=4 SV=1	[more]
A0A0A0LUU8_CUCSA	1.3e+02	59.09	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096085 PE=4 SV=1	[more]

BLAST of Csa1G096100 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209680\|gb\|KGN64776.1\|	5.4e-86	100.00	hypothetical protein Csa_1G096100 [Cucumis sativus]	[more]
gi\|449459148\|ref\|XP_004147308.1\|	5.4e-38	81.98	PREDICTED: uncharacterized protein LOC101204150 [Cucumis sativus]	[more]
gi\|449459148\|ref\|XP_004147308.1\|	6.0e-21	74.63	PREDICTED: uncharacterized protein LOC101204150 [Cucumis sativus]	[more]
gi\|659072286\|ref\|XP_008464773.1\|	1.1e-19	72.58	PREDICTED: uncharacterized protein LOC103502580 [Cucumis melo]	[more]
gi\|700209691\|gb\|KGN64787.1\|	4.2e+02	64.71	hypothetical protein Csa_1G097660 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G096100.1	Csa1G096100.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G096100	Cla005070	Watermelon (97103) v1	cuwmB010
Csa1G096100	ClCG03G002530	Watermelon (Charleston Gray)	cuwcgB037
Csa1G096100	Lsi03G001430	Bottle gourd (USVL1VR-Ls)	culsiB047
Csa1G096100	Cla97C03G053590	Watermelon (97103) v2	cuwmbB034
Csa1G096100	Bhi08G000230	Wax gourd	cuwgoB049
Csa1G096100	CSPI01G13070	Wild cucumber (PI 183967)	cpicuB000
Csa1G096100	CmaCh13G002120	Cucurbita maxima (Rimu)	cmacuB203
Csa1G096100	CmoCh13G002150	Cucurbita moschata (Rifu)	cmocuB188
Csa1G096100	CsGy1G013160	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G096100	Cucumber (Gy14) v1	cgycuB314
Csa1G096100	Cucurbita maxima (Rimu)	cmacuB431
Csa1G096100	Cucurbita moschata (Rifu)	cmocuB421
Csa1G096100	Melon (DHL92) v3.5.1	cumeB015
Csa1G096100	Cucurbita pepo (Zucchini)	cpecuB516
Csa1G096100	Cucurbita pepo (Zucchini)	cpecuB528
Csa1G096100	Melon (DHL92) v3.6.1	cumedB010
Csa1G096100	Silver-seed gourd	carcuB0472