Csa1G096060 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G096060
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 8445944 .. 8447199 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGAAGAGGAAATTTCTCTCTATATAATATTAATGGTTACTTCTTAATTGAAACGACGATATTTTGTTTAATCTCATTTTAAATTACTCTTAGTGGTGAAAAAGAACATAGCTCATTTTTCATATATCAAAGTGTATTAGCCCCGTGAAGTTTGTAGTTTGAATTTTCCTACTCAATTATACTTTAAAAAAAGTTACTTTATTAATATATTATTTTGTTGAGTAATATTTAAATATAAAAAGACAACAATACAATCGTTACACGTGCAAATGCATGTTAATATTTTATAGTATTGAAAAATAAAAATATACATTAAATGGTTTAGTTATTAATTTCAAATATATCAAATATAATTATAATGATTTTTAATAAGTTAGGGAGTAGTAAGAATTAGAAAAGAAAAAAAATAGAAAACTTCAAATTTTGGTGAACTTGAGACGCGAGACCGACCCGTTAGAAATCACACTCCCTTTCTTCATCTCTCGTTGCTGCAGTACCGCCGCTGCTGGGTGTTTCTGTTTCTCCCTCTCTTTCTTACAGCTCTCTCTTTCTCACTGTTCGCTGGTGGGTTTAATTTATTTGGTGTCATCTAACTGTCACCTCATTTACAATCAGCACATTATCCTACAAATTTTCTCATTTTTTATGTTCAACCTACAGTTTTAGAGAAATTATTTGATGGAATTCTTTCCTTGGGTACAAAGAACGGTCTTCCTATTTTGGGTCCATAGTATATTGCATTCTTAGCATAATCATATACCAAAGCATACCCAATAGATTTTCCACCACCAAGGGAAGTTCGAAACTTGAAAACAAAGATTGCATGTGGTGAAGGTTGTAATATATTTAGAACTACTCTGTTTGTAGCTTTAGGTTGTTATTGGATTCATTTGAACACCATTCTGAAAGTTCCAAGTCTATTTTGCAACTCTTGGGAACTCTCTTGGTTGTAGTTTGGGACCAATTCACAGTATTTGAATTGAGGTTTAGGGGCAACTCTGAATGAAGTTTTGAGCTAAGGTTTTAGGGAAACCTTGTTTTCATCGTTTCATTAGTCTTTTGAATAGCTTAGAAGCACTCCACAACGTCAATTGATTAGTTCTTACTTGTAGAGTCTAATTACTTGTGTGCTAGCATGCTACGTGCTTCATTTATGTTGTGTTATATGACTTACACGAACTCATTTATAGGATCACTACGTGCGGTGATATTTGTGTTTTGTTATACGACTTCTCTTCGACTATTGTCATAG

mRNA sequence

ATGGTTGAAGAGGAAATTTCTCTCTATATAATATTAATGAAAACTTCAAATTTTGGTGAACTTGAGACGCGAGACCGACCCGTTAGAAATCACACTCCCTTTCTTCATCTCTCGTTGCTGCAGTACCGCCGCTGCTGGGTGTTTCTGTTTCTCCCTCTCTTTCTTACAGCTCTCTCTTTCTCACTGTTCGCTGGATCACTACGTGCGGTGATATTTGTGTTTTGTTATACGACTTCTCTTCGACTATTGTCATAG

Coding sequence (CDS)

ATGGTTGAAGAGGAAATTTCTCTCTATATAATATTAATGAAAACTTCAAATTTTGGTGAACTTGAGACGCGAGACCGACCCGTTAGAAATCACACTCCCTTTCTTCATCTCTCGTTGCTGCAGTACCGCCGCTGCTGGGTGTTTCTGTTTCTCCCTCTCTTTCTTACAGCTCTCTCTTTCTCACTGTTCGCTGGATCACTACGTGCGGTGATATTTGTGTTTTGTTATACGACTTCTCTTCGACTATTGTCATAG

Protein sequence

MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSFSLFAGSLRAVIFVFCYTTSLRLLS*
Homology
[Close]
BLAST of Csa1G096060 vs. TrEMBL
Match: A0A0A0LXP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096060 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.4e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF 60
          MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF
Sbjct: 1  MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF 60

Query: 61 SLFAGSLRAVIFVFCYTTSLRLLS 85
          SLFAGSLRAVIFVFCYTTSLRLLS
Sbjct: 61 SLFAGSLRAVIFVFCYTTSLRLLS 84

[Close]
BLAST of Csa1G096060 vs. NCBI nr
Match: gi|700209675|gb|KGN64771.1| (hypothetical protein Csa_1G096060 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-39
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 

Query: 1  MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF 60
          MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF
Sbjct: 1  MVEEEISLYIILMKTSNFGELETRDRPVRNHTPFLHLSLLQYRRCWVFLFLPLFLTALSF 60

Query: 61 SLFAGSLRAVIFVFCYTTSLRLLS 85
          SLFAGSLRAVIFVFCYTTSLRLLS
Sbjct: 61 SLFAGSLRAVIFVFCYTTSLRLLS 84

The following BLAST results are available for this feature:
BLAST of Csa1G096060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXP5_CUCSA1.4e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G096060 PE=4 SV=1[more]
BLAST of Csa1G096060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209675|gb|KGN64771.1|2.0e-39100.00hypothetical protein Csa_1G096060 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G096060.1Csa1G096060.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G096060Watermelon (97103) v2cuwmbB034
Csa1G096060Wax gourdcuwgoB049
Csa1G096060Cucumber (Gy14) v1cgycuB314
Csa1G096060Cucurbita maxima (Rimu)cmacuB203
Csa1G096060Cucurbita maxima (Rimu)cmacuB431
Csa1G096060Cucurbita moschata (Rifu)cmocuB188
Csa1G096060Cucurbita moschata (Rifu)cmocuB421
Csa1G096060Melon (DHL92) v3.5.1cumeB015
Csa1G096060Watermelon (Charleston Gray)cuwcgB037
Csa1G096060Watermelon (97103) v1cuwmB010
Csa1G096060Cucurbita pepo (Zucchini)cpecuB516
Csa1G096060Cucurbita pepo (Zucchini)cpecuB528
Csa1G096060Bottle gourd (USVL1VR-Ls)culsiB024
Csa1G096060Bottle gourd (USVL1VR-Ls)culsiB047
Csa1G096060Cucumber (Gy14) v2cgybcuB001
Csa1G096060Melon (DHL92) v3.6.1cumedB010
Csa1G096060Silver-seed gourdcarcuB0472