Csa1G095010 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G095010
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDNA-directed RNA polymerase subunit, putative; contains IPR009025 (DNA-directed RNA polymerase, RBP11-like)
LocationChr1 : 8394420 .. 8396753 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGATTTATTTTTAATTACAACCTTGCTATAATCTCTCTTCCTGCTCCACTACAGCCCAGCCGCAGCCCCTCTCTTCGGTGAGCTTCTTTGAACCGCATACGAACGGTGCCCACGACACCGTATCGCCCAAGAGCACAGTGGCGGACTACACCCGACACGTTTGCTTGGCCAATAGCTTGGAGCAACTGTGAGTGACGCCACCAACGTCTTCTGGCTTTTTTAGCACCGTTTTCTCTAGTTCAAGGAGTTTCGGTACTTACCCATTCTATTTCAACATTAGATTTGAGTTACCCACTTCTTAACGGCTCCAAACATGTAGGATTGAACGTATTCGGACGCCAACCAGCAAAGTTTCAAGTCGTTTGGATAAGTTTCTGCGGGGGTAAGAATGGTCTAAATTTCCTTTTGAACTTGTTTAAGATCCTTTATTTGGACACTTTTCACCCTTTTGGATTAGATTTAGATGGTGTAAATTAGTCTATAACTCTTGGTATGCTTAATTTGTGGTTTAAGGTGAGAGATTTTTGAGGTGGATAATTGAAGAATCATGAAACTAGTCTGTCTAATTTTATCTGTTAACTTCTCATGATTGATATTTCAATTCTATAAAGTTGGTGGAGAAAAGATTTTAACTTCTTGGATCCGTTGATTATGTAGAATTTCGGCTTTTTTTTTTTTATGTTATCAAATTTTTGGTTTATTTTCTTTGATATTCTCAATTTATTTACCTTCATTGCTAATCAAGATGGTATTTTGTTTGGTTTTCTATTTTTTAAATAGCAATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTGTGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAACCAAGAGTATGACCTCTTATTCAGTTATTCTTGAGTGAATATTTTGAAATGTTAACATGACATGGACAAGCCAAAGAATTTGCAGTTCTTGGACTACTTATCTTTTCTAACCATTTCATCACTGATTTCTATTAATTCGTGACATAACTAATTAAACAGATTCTTGGTTCTTGTGAACATATCATCAAAAAGGTCCTTGAAAAGTTAATTAGGATCTAGCTGGTTTCGATTATTGTTATTTATTCTTTAGTAAATCATATTCAGACATACTTTTAAATGGCTTGCAATGATCTTGCAGTCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAGACAACAGGTAATTTGTCTCTTTAAAAGTGGAGCCGATTGGTTCCCATTTAGGACATGTTTTCTAATGGTTAGATTTGGTCTTTCTGTTTTTATGCTTTATACACATCCAATCTATGCATCCATGAGATATATAGCTTATGGATCTATGGGAAGTGTGATCCTCTTTAAAGAAAAATCTTTCAGTAAAATCACCTTGTTGCTTAGCTAGAACCAACCCCGTTATTTTTATAAGCATATAAATATATGTTTTAGTATTCATATGAAAGGTTGTATCTATTTAGTTTCATAACTTTAACAAGATTCAATTGTCTATTTAAAATTTGAATAGTTAACCATCATGGATTGGTGTACTGGTTAAAAAGGAGATATAGTCTCAATAGCTAATTAAGACGTCATGGGTTCAATCCATGGTGGCTACCTACCTAAGAGTTAATTTTCTACGACTTGGCAATTAGGACATACCCACTATTGTCTAATCAACAATAATGTTAATAACTATGACTACACATGACTATACATGATTAATTATACTTGCAAAGTGTGCAAACCATATTTAAAACTTGAAATACTTAGGCGCAACCATAGTTGGAGTTCCATTATTGATTACTAGGGAAAACAAAGCACATGGAAATATGGTAGGAGCAATATAGCAAACAGAAGACTATCAGCAATTTAGCATTACTGAAAGAAAGGTTAATTATGGTTGAATTAAGCTGGATTTTTTATTGAACATGGTAGGTGATCCTGCGAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATGTCAAACTCACCAACCCTGTGCGAGACATTAATATCAAATAGAATGGGAACCTTTCTTTTTCTTTGTCTTGTAATTTATTTATTTACTTTTCTGGTTCAATACTTATTGTAGTTTATAGTTCGTTAAGATGGGTTTGTTACTGGCTTTGGAAAAGATTCATTCCATTGAATTTTGCTTACTTTTACTGTTATCTTAACTGATGGCTGATGCTCTCCCTCAGGCTTGACAGAATTGCAATCGAGAGTGTCTTTAC

mRNA sequence

ATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTGTGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAACCAAGATCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAGACAACAGGTGATCCTGCGAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATGTCAAACTCACCAACCCTGTGCGAGACATTAATATCAAATAG

Coding sequence (CDS)

ATGGAACATGGATCCTTCACAGATGAGACCAAATCAACATTTTCTGTGGCTGATGAAGATCATACACTTGCAAATACTCTCAGATACACTTTGAACCAAGATCCAAGAGTGACATTCTGTGGATACAGCATCCCTCATCCTTCAGATAATCGAGTTAATATTCGAGTTCAGACAACAGGTGATCCTGCGAGAGAGGTTTTGAAAGATGCTTGTCAGAACTTGATGGTGGTGTGCCAACATGTGAGGAACACATTTGACAAAGCTGTGCTTGATGTCAAACTCACCAACCCTGTGCGAGACATTAATATCAAATAG

Protein sequence

MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK*
Homology
[Close]
BLAST of Csa1G095010 vs. Swiss-Prot
Match: RPAC2_XENLA (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.6e-17
Identity = 41/87 (47.13%), Postives = 57/87 (65.52%), Query Frame = 1 

Query: 8   DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           +E+  TF + +EDHTL N+LRY + ++P V FCGYSI HPS+ ++N R+QT  G PA E 
Sbjct: 20  EESCVTFVLHEEDHTLGNSLRYMVMKNPEVEFCGYSITHPSETKINFRIQTRNGIPAVEP 79

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDVK 94
            +     L+ VCQHV NTF+ ++ + K
Sbjct: 80  FRRGLNELVDVCQHVLNTFETSIKEYK 106

[Close]
BLAST of Csa1G095010 vs. Swiss-Prot
Match: RPAC2_HUMAN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 2.9e-16
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDVK 94
             PA E  +     LM VCQHV + F+ ++ D K
Sbjct: 89  TLPAVEPFQRGLNELMNVCQHVLDKFEASIKDYK 122

[Close]
BLAST of Csa1G095010 vs. Swiss-Prot
Match: RPAC2_BOVIN (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-15
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           M   + TD    TF + +EDHTL N+LRY + ++P V FCGY+  HPS++++N+R+QT G
Sbjct: 29  MVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRG 88

Query: 61  D-PAREVLKDACQNLMVVCQHVRNTFDKAVLDVK 94
             PA E  +    +LM VCQHV + F+ ++ + K
Sbjct: 89  ALPAVEPFQRGLTDLMNVCQHVLDKFEASIKEYK 122

[Close]
BLAST of Csa1G095010 vs. Swiss-Prot
Match: RPAC2_DANRE (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-15
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = 1 

Query: 8   DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQT-TGDPAREV 67
           DE   TF + +EDHTL N+LRY + +   V FCGYSI HPS++++N R+QT  G PA E 
Sbjct: 19  DEGCVTFVLNEEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEP 78

Query: 68  LKDACQNLMVVCQHVRNTFDKAVLDVK 94
           L++   NL  VC+HV  TF+  + + K
Sbjct: 79  LRNGLNNLTDVCKHVLQTFEARMKEFK 105

[Close]
BLAST of Csa1G095010 vs. Swiss-Prot
Match: RPAC2_YEAST (DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPC19 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 1 

Query: 8   DETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGD-PAREV 67
           D T ++F + +EDHTL N LRY + ++P V FCGYSIPHPS+N +NIR+QT G+  A + 
Sbjct: 57  DGTSASFQIVEEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDA 116

Query: 68  LKDACQNLMVVCQHVRNTFDKAV 90
           L+   ++LM +C  V + F + +
Sbjct: 117 LQKGLKDLMDLCDVVESKFTEKI 139

[Close]
BLAST of Csa1G095010 vs. TrEMBL
Match: A0A0A0LUT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095010 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.2e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]
BLAST of Csa1G095010 vs. TrEMBL
Match: A0A0A0LV21_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527910 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.9e-47
Identity = 97/108 (89.81%), Postives = 98/108 (90.74%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFS+ADEDHTLAN LR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT----NPVRDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT     PV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]
BLAST of Csa1G095010 vs. TrEMBL
Match: D7SK51_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05830 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 6.2e-42
Identity = 80/104 (76.92%), Postives = 98/104 (94.23%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+D +KSTFS++DEDHTLAN++R+TLNQDPRV FCGYSIPHPSD RVNIRVQTTG
Sbjct: 1   MEHGSFSDHSKSTFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 105
           D AREVLKDACQ+LM++CQHVR+TFDKAV+D K++ PV+D++I+
Sbjct: 61  DSAREVLKDACQDLMLMCQHVRSTFDKAVVDYKMSKPVKDMSIE 104

[Close]
BLAST of Csa1G095010 vs. TrEMBL
Match: A0A0D2NLY9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_006G047400 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 7.6e-40
Identity = 79/103 (76.70%), Postives = 92/103 (89.32%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTD + +TFS+ DEDHT+ANT+R+TLNQDPRVTFCGYSIPHPS+ RVNIRVQTTG
Sbjct: 1   MEHGSFTDNSAATFSLTDEDHTIANTVRFTLNQDPRVTFCGYSIPHPSEARVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINI 104
           DPAREVLKDACQNLM++C+HVR TFDKAV D K +N V+ + I
Sbjct: 61  DPAREVLKDACQNLMLMCRHVRCTFDKAVEDFKASNAVKAMKI 103

[Close]
BLAST of Csa1G095010 vs. TrEMBL
Match: C6T2I2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-39
Identity = 76/95 (80.00%), Postives = 90/95 (94.74%), Query Frame = 1 

Query: 1  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGS+TD++KSTFS+ DEDHT AN +R+TLNQDPRV+FCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSYTDQSKSTFSLVDEDHTFANAVRFTLNQDPRVSFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT 96
          DP+REVLKDACQ+LM++CQHVR+TFDKAV D K++
Sbjct: 61 DPSREVLKDACQDLMLMCQHVRSTFDKAVSDFKIS 95

[Close]
BLAST of Csa1G095010 vs. TAIR10
Match: AT2G29540.3 (AT2G29540.3 RNApolymerase 14 kDa subunit)

HSP 1 Score: 86.7 bits (213), Expect = 9.6e-18
Identity = 41/59 (69.49%), Postives = 45/59 (76.27%), Query Frame = 1 

Query: 35  PRVTFCGYSIPHPSDNRVNIRVQTTGDPAREVLKDACQNLMVVCQHVRNTFDKAVLDVK 94
           PRVT   Y+IPHPS  +VNIRVQTTGDPAREV KDACQ LM + +HVR+ FDKAV + K
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110

[Close]
BLAST of Csa1G095010 vs. TAIR10
Match: AT3G52090.2 (AT3G52090.2 DNA-directed RNA polymerase, RBP11-like)

HSP 1 Score: 48.1 bits (113), Expect = 3.8e-06
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 1 

Query: 5  SFTDETK----STFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 64
          S+  +TK    ++F+V  EDHT+ N +R  L++D  V F GY +PHP   ++ +R     
Sbjct: 20 SYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVR----- 79

Query: 65 DPAREVLKDACQNLMVV 78
          DP     KD  +NL VV
Sbjct: 80 DP-----KDWFRNLKVV 86

[Close]
BLAST of Csa1G095010 vs. NCBI nr
Match: gi|778659017|ref|XP_004147276.2| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 1.7e-53
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 104

[Close]
BLAST of Csa1G095010 vs. NCBI nr
Match: gi|449455052|ref|XP_004145267.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 4.1e-47
Identity = 97/108 (89.81%), Postives = 98/108 (90.74%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFS+ADEDHTLAN LR TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRCTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT----NPVRDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT     PV DINIK
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKPKEKPVGDINIK 108

[Close]
BLAST of Csa1G095010 vs. NCBI nr
Match: gi|659115158|ref|XP_008457416.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo])

HSP 1 Score: 195.3 bits (495), Expect = 5.4e-47
Identity = 96/108 (88.89%), Postives = 98/108 (90.74%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSFTDETKSTFS+ADEDHTLAN LRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1   MEHGSFTDETKSTFSMADEDHTLANALRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLT----NPVRDINIK 105
           DPAREVLKDACQNLMVVCQHVRNTFDKAVLD  LT     P  DINI+
Sbjct: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDFNLTKAKEEPEGDINIE 108

[Close]
BLAST of Csa1G095010 vs. NCBI nr
Match: gi|225434732|ref|XP_002281351.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Vitis vinifera])

HSP 1 Score: 177.9 bits (450), Expect = 8.9e-42
Identity = 80/104 (76.92%), Postives = 98/104 (94.23%), Query Frame = 1 

Query: 1   MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
           MEHGSF+D +KSTFS++DEDHTLAN++R+TLNQDPRV FCGYSIPHPSD RVNIRVQTTG
Sbjct: 1   MEHGSFSDHSKSTFSLSDEDHTLANSIRFTLNQDPRVAFCGYSIPHPSDARVNIRVQTTG 60

Query: 61  DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPVRDINIK 105
           D AREVLKDACQ+LM++CQHVR+TFDKAV+D K++ PV+D++I+
Sbjct: 61  DSAREVLKDACQDLMLMCQHVRSTFDKAVVDYKMSKPVKDMSIE 104

[Close]
BLAST of Csa1G095010 vs. NCBI nr
Match: gi|1021481695|ref|XP_016183995.1| (PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Arachis ipaensis])

HSP 1 Score: 172.6 bits (436), Expect = 3.8e-40
Identity = 78/98 (79.59%), Postives = 91/98 (92.86%), Query Frame = 1 

Query: 1  MEHGSFTDETKSTFSVADEDHTLANTLRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGS +D++KSTFS+ADEDHT AN++R+TLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG
Sbjct: 1  MEHGSHSDQSKSTFSLADEDHTFANSMRFTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60

Query: 61 DPAREVLKDACQNLMVVCQHVRNTFDKAVLDVKLTNPV 99
          DPAREVLKDACQ+LM++CQHVR+TFDKA+ D K +  V
Sbjct: 61 DPAREVLKDACQDLMLICQHVRSTFDKAISDFKKSETV 98

The following BLAST results are available for this feature:
BLAST of Csa1G095010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPAC2_XENLA7.6e-1747.13DNA-directed RNA polymerases I and III subunit RPAC2 OS=Xenopus laevis GN=polr1d... [more]
RPAC2_HUMAN2.9e-1643.62DNA-directed RNA polymerases I and III subunit RPAC2 OS=Homo sapiens GN=POLR1D P... [more]
RPAC2_BOVIN1.1e-1542.55DNA-directed RNA polymerases I and III subunit RPAC2 OS=Bos taurus GN=POLR1D PE=... [more]
RPAC2_DANRE1.1e-1547.13DNA-directed RNA polymerases I and III subunit RPAC2 OS=Danio rerio GN=polr1d PE... [more]
RPAC2_YEAST1.4e-1545.78DNA-directed RNA polymerases I and III subunit RPAC2 OS=Saccharomyces cerevisiae... [more]
BLAST of Csa1G095010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT5_CUCSA1.2e-53100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G095010 PE=4 SV=1[more]
A0A0A0LV21_CUCSA2.9e-4789.81Uncharacterized protein OS=Cucumis sativus GN=Csa_1G527910 PE=4 SV=1[more]
D7SK51_VITVI6.2e-4276.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05830 PE=4 SV=... [more]
A0A0D2NLY9_GOSRA7.6e-4076.70Uncharacterized protein OS=Gossypium raimondii GN=B456_006G047400 PE=4 SV=1[more]
C6T2I2_SOYBN1.0e-3980.00Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of Csa1G095010 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G29540.39.6e-1869.49 RNApolymerase 14 kDa subunit[more]
AT3G52090.23.8e-0637.66 DNA-directed RNA polymerase, RBP11-like[more]
BLAST of Csa1G095010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778659017|ref|XP_004147276.2|1.7e-53100.00PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus... [more]
gi|449455052|ref|XP_004145267.1|4.1e-4789.81PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis sativus... [more]
gi|659115158|ref|XP_008457416.1|5.4e-4788.89PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Cucumis melo][more]
gi|225434732|ref|XP_002281351.1|8.9e-4276.92PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Vitis vinifera][more]
gi|1021481695|ref|XP_016183995.1|3.8e-4079.59PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2-like [Arachis ip... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR009025RBP11-like_dimer
Vocabulary: Biological Process
TermDefinition
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003899DNA-directed RNA polymerase activity
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006383 transcription from RNA polymerase III promoter
biological_process GO:0006360 transcription from RNA polymerase I promoter
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005736 DNA-directed RNA polymerase I complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0001054 RNA polymerase I activity
molecular_function GO:0001056 RNA polymerase III activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU114275cucumber EST collection version 3.0transcribed_cluster
CU124311cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G095010.1Csa1G095010.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU114275CU114275transcribed_cluster
CU124311CU124311transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 16..47
scor
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainunknownSSF55257RBP11-like subunits of RNA polymerasecoord: 8..90
score: 2.09
NoneNo IPR availableGENE3DG3DSA:3.30.1360.10coord: 8..93
score: 4.2
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 1..104
score: 1.9
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 1..104
score: 1.9
NoneNo IPR availablePFAMPF13656RNA_pol_L_2coord: 12..83
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G095010Cla005060Watermelon (97103) v1cuwmB010
Csa1G095010ClCG03G002440Watermelon (Charleston Gray)cuwcgB037
Csa1G095010Lsi02G014510Bottle gourd (USVL1VR-Ls)culsiB024
Csa1G095010Cla97C03G053490Watermelon (97103) v2cuwmbB034
Csa1G095010Cucsa.207480Cucumber (Gy14) v1cgycuB314
Csa1G095010CsGy1G013050Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G095010Melon (DHL92) v3.6.1cumedB010
Csa1G095010Silver-seed gourdcarcuB0472
Csa1G095010Wax gourdcuwgoB049
Csa1G095010Cucurbita maxima (Rimu)cmacuB203
Csa1G095010Cucurbita maxima (Rimu)cmacuB431
Csa1G095010Cucurbita moschata (Rifu)cmocuB188
Csa1G095010Cucurbita moschata (Rifu)cmocuB421
Csa1G095010Melon (DHL92) v3.5.1cumeB015
Csa1G095010Cucurbita pepo (Zucchini)cpecuB002
Csa1G095010Cucurbita pepo (Zucchini)cpecuB516
Csa1G095010Cucurbita pepo (Zucchini)cpecuB528